Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
20:53:32 (191587): wrapper (7.7.26015): starting
20:53:32 (191587): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 20:53:32] Arguments: --nthreads 12
[2024-05-17 20:53:32] Threads: 12
[2024-05-17 20:53:32] Checking for CVMFS
[2024-05-17 20:53:33] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 20:53:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 20:53:33] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 20:53:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 20:53:33] 2.9.2.0 179502 184401 171744 132865 0 361 43818593 45568000 9721 130560 0 1236403082 99.804 700172631 18659 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 20:53:33] CVMFS is ok
[2024-05-17 20:53:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 20:53:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 20:53:33] Further information can be found at the LHC@home message board.
[2024-05-17 20:53:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 20:53:33] Checking for apptainer binary...
[2024-05-17 20:53:33] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 20:53:33] Running /usr/bin/apptainer --version
[2024-05-17 20:53:33] apptainer version 1.1.8-1.el7
[2024-05-17 20:53:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 20:53:34] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0169.triumf.lcg
[2024-05-17 20:53:34] apptainer works
[2024-05-17 20:53:34] Set ATHENA_PROC_NUMBER=12
[2024-05-17 20:53:34] Set ATHENA_CORE_NUMBER=12
[2024-05-17 20:53:34] Starting ATLAS job with PandaID=6208213284
[2024-05-17 20:53:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 21:43:27]  *** The last 200 lines of the pilot log: ***
[2024-05-17 21:43:27]  filetype=log
[2024-05-17 21:43:27]  guid=372bcdd1-8d70-4337-ae87-e7b6ad231364
[2024-05-17 21:43:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 21:43:27]  is_tar=False
[2024-05-17 21:43:27]  lfn=log.38776104._013707.job.log.tgz.1
[2024-05-17 21:43:27]  mtime=0
[2024-05-17 21:43:27]  protocol_id=None
[2024-05-17 21:43:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 21:43:27]  replicas=None
[2024-05-17 21:43:27]  scope=mc23_13p6TeV
[2024-05-17 21:43:27]  status=None
[2024-05-17 21:43:27]  status_code=0
[2024-05-17 21:43:27]  storage_token=
[2024-05-17 21:43:27]  surl=/home/boinc/slots/0/PanDA_Pilot-6208213284/log.38776104._013707.job.log.tgz.1
[2024-05-17 21:43:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/6b/log.38776104._013707.job.log.tgz.1
[2024-05-17 21:43:27]  workdir=None
[2024-05-17 21:43:27] ]
[2024-05-17 21:43:27] 2024-05-18 04:42:59,148 | INFO     | transferring file log.38776104._013707.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208213284/log.38776104._013707.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 21:43:27] 2024-05-18 04:42:59,149 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208213284/log.38776104._013707.job.log.tgz.1 /home/boinc/slots/0/log.38776104._013707.job.log.t
[2024-05-17 21:43:27] 2024-05-18 04:42:59,200 | INFO     | adding to output.list: log.38776104._013707.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/6b/log.38776104._013707.job.log.tg
[2024-05-17 21:43:27] 2024-05-18 04:42:59,201 | INFO     | summary of transferred files:
[2024-05-17 21:43:27] 2024-05-18 04:42:59,201 | INFO     |  -- lfn=log.38776104._013707.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 21:43:27] 2024-05-18 04:42:59,201 | INFO     | stage-out finished correctly
[2024-05-17 21:43:27] 2024-05-18 04:43:00,888 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 21:43:27] 2024-05-18 04:43:01,008 | INFO     | monitor loop #230: job 0:6208213284 is in state 'finished'
[2024-05-17 21:43:27] 2024-05-18 04:43:01,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 21:43:27] 2024-05-18 04:43:03,473 | INFO     | job 6208213284 has state=finished
[2024-05-17 21:43:27] 2024-05-18 04:43:03,473 | INFO     | preparing for final server update for job 6208213284 in state='finished'
[2024-05-17 21:43:27] 2024-05-18 04:43:03,474 | INFO     | this job has now completed (state=finished)
[2024-05-17 21:43:27] 2024-05-18 04:43:03,474 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 21:43:27] 2024-05-18 04:43:03,474 | INFO     | job 6208213284 has finished - writing final server update
[2024-05-17 21:43:27] 2024-05-18 04:43:03,475 | INFO     | total number of processed events: 400 (read)
[2024-05-17 21:43:27] 2024-05-18 04:43:03,479 | INFO     | executing command: lscpu
[2024-05-17 21:43:27] 2024-05-18 04:43:03,511 | INFO     | monitor loop #231: job 0:6208213284 is in state 'finished'
[2024-05-17 21:43:27] 2024-05-18 04:43:03,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 21:43:27] 2024-05-18 04:43:03,551 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 21:43:27] 2024-05-18 04:43:03,551 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 21:43:27] 2024-05-18 04:43:03,644 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 21:43:27] 2024-05-18 04:43:06,015 | INFO     | monitor loop #232: job 0:6208213284 is in state 'finished'
[2024-05-17 21:43:27] 2024-05-18 04:43:06,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 21:43:27] 2024-05-18 04:43:08,517 | INFO     | monitor loop #233: job 0:6208213284 is in state 'finished'
[2024-05-17 21:43:27] 2024-05-18 04:43:08,518 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 21:43:27] 2024-05-18 04:43:10,827 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 21:43:27] 2024-05-18 04:43:10,828 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208213284/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 21:43:27] 2024-05-18 04:43:10,829 | INFO     | extracted standard info from prmon json
[2024-05-17 21:43:27] 2024-05-18 04:43:10,829 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 21:43:27] 2024-05-18 04:43:10,830 | WARNING  | GPU info not found in prmon json
[2024-05-17 21:43:27] 2024-05-18 04:43:10,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 21:43:27] 2024-05-18 04:43:10,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 21:43:27] 2024-05-18 04:43:10,832 | INFO     | fitting pss+swap vs Time
[2024-05-17 21:43:27] 2024-05-18 04:43:10,832 | INFO     | model: linear, x: [1716004769.0, 1716004830.0, 1716004891.0, 1716004952.0, 1716005013.0, 1716005074.0, 1716005135.0, 1716005196.0, 1716005257.0, 1716005318.0, 1716
[2024-05-17 21:43:27] 2024-05-18 04:43:10,832 | INFO     | sum of square deviations: 21358540.0
[2024-05-17 21:43:27] 2024-05-18 04:43:10,833 | INFO     | sum of deviations: 11554617743.0
[2024-05-17 21:43:27] 2024-05-18 04:43:10,833 | INFO     | mean x: 1716005989.0
[2024-05-17 21:43:27] 2024-05-18 04:43:10,833 | INFO     | mean y: 2471458.7804878047
[2024-05-17 21:43:27] 2024-05-18 04:43:10,833 | INFO     | -- intersect: -928328456010.6843
[2024-05-17 21:43:27] 2024-05-18 04:43:10,833 | INFO     | intersect: -928328456010.6843
[2024-05-17 21:43:27] 2024-05-18 04:43:10,833 | INFO     | chi2: 1.5730696453122492
[2024-05-17 21:43:27] 2024-05-18 04:43:10,834 | INFO     | -- intersect: -928328456010.6843
[2024-05-17 21:43:27] 2024-05-18 04:43:10,834 | INFO     | current memory leak: 540.98 B/s (using 41 data points, chi2=1.57)
[2024-05-17 21:43:27] 2024-05-18 04:43:10,834 | INFO     | ..............................
[2024-05-17 21:43:27] 2024-05-18 04:43:10,834 | INFO     | . Timing measurements:
[2024-05-17 21:43:27] 2024-05-18 04:43:10,834 | INFO     | . get job = 0 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | . initial setup = 2 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | . payload setup = 8 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | . stage-in = 0 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | . payload execution = 2919 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | . stage-out = 0 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | . log creation = 0 s
[2024-05-17 21:43:27] 2024-05-18 04:43:10,835 | INFO     | ..............................
[2024-05-17 21:43:27] 2024-05-18 04:43:11,379 | INFO     | 
[2024-05-17 21:43:27] 2024-05-18 04:43:11,379 | INFO     | job summary report
[2024-05-17 21:43:27] 2024-05-18 04:43:11,379 | INFO     | --------------------------------------------------
[2024-05-17 21:43:27] 2024-05-18 04:43:11,379 | INFO     | PanDA job id: 6208213284
[2024-05-17 21:43:27] 2024-05-18 04:43:11,379 | INFO     | task id: 38776104
[2024-05-17 21:43:27] 2024-05-18 04:43:11,379 | INFO     | errors: (none)
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | pilot state: finished 
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | transexitcode: 0
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | exeerrorcode: 0
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | exeerrordiag: 
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | exitcode: 0
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | exitmsg: OK
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | cpuconsumptiontime: 24224 s
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | nevents: 400
[2024-05-17 21:43:27] 2024-05-18 04:43:11,380 | INFO     | neventsw: 0
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | pid: 204536
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | pgrp: 204536
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | corecount: 12
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | event service: False
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | sizes: {0: 2392204, 7: 2392410, 11: 2392438, 2931: 2417618, 2932: 2426572, 2934: 2426628, 2944: 2426926}
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | --------------------------------------------------
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | 
[2024-05-17 21:43:27] 2024-05-18 04:43:11,381 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 21:43:27] 2024-05-18 04:43:11,432 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,433 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 21:43:27] 2024-05-18 04:43:11,434 | INFO     | job 6208213284 has completed (purged errors)
[2024-05-17 21:43:27] 2024-05-18 04:43:11,435 | INFO     | overall cleanup function is called
[2024-05-17 21:43:27] 2024-05-18 04:43:12,443 | INFO     | --- collectZombieJob: --- 10, [204536]
[2024-05-17 21:43:27] 2024-05-18 04:43:12,443 | INFO     | zombie collector waiting for pid 204536
[2024-05-17 21:43:27] 2024-05-18 04:43:12,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 21:43:27] 2024-05-18 04:43:13,449 | INFO     | collected zombie processes
[2024-05-17 21:43:27] 2024-05-18 04:43:13,449 | INFO     | will now attempt to kill all subprocesses of pid=204536
[2024-05-17 21:43:27] 2024-05-18 04:43:13,599 | INFO     | process IDs to be killed: [204536] (in reverse order)
[2024-05-17 21:43:27] 2024-05-18 04:43:13,719 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 21:43:27] 2024-05-18 04:43:13,719 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 21:43:27] 2024-05-18 04:43:13,724 | INFO     | did not find any defunct processes belonging to 204536
[2024-05-17 21:43:27] 2024-05-18 04:43:13,728 | INFO     | did not find any defunct processes belonging to 204536
[2024-05-17 21:43:27] 2024-05-18 04:43:13,728 | INFO     | ready for new job
[2024-05-17 21:43:27] 2024-05-18 04:43:13,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 21:43:27] 2024-05-18 04:43:13,729 | INFO     | *************************************
[2024-05-17 21:43:27] 2024-05-18 04:43:13,730 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 21:43:27] 2024-05-18 04:43:13,730 | INFO     | *************************************
[2024-05-17 21:43:27] 2024-05-18 04:43:13,730 | INFO     | 
[2024-05-17 21:43:27] 2024-05-18 04:43:13,731 | INFO     | architecture information:
[2024-05-17 21:43:27] 2024-05-18 04:43:13,731 | INFO     | executing command: cat /etc/os-release
[2024-05-17 21:43:27] 2024-05-18 04:43:13,769 | INFO     | cat /etc/os-release:
[2024-05-17 21:43:27] NAME="CentOS Linux"
[2024-05-17 21:43:27] VERSION="7 (Core)"
[2024-05-17 21:43:27] ID="centos"
[2024-05-17 21:43:27] ID_LIKE="rhel fedora"
[2024-05-17 21:43:27] VERSION_ID="7"
[2024-05-17 21:43:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 21:43:27] ANSI_COLOR="0;31"
[2024-05-17 21:43:27] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 21:43:27] HOME_URL="https://www.centos.org/"
[2024-05-17 21:43:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 21:43:27] 
[2024-05-17 21:43:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 21:43:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 21:43:27] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 21:43:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 21:43:27] 
[2024-05-17 21:43:27] 2024-05-18 04:43:13,769 | INFO     | *************************************
[2024-05-17 21:43:27] 2024-05-18 04:43:14,272 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 21:43:27] 2024-05-18 04:43:14,319 | INFO     | sufficient remaining disk space (2570789584896 B)
[2024-05-17 21:43:27] 2024-05-18 04:43:14,319 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 21:43:27] 2024-05-18 04:43:14,319 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 21:43:27] 2024-05-18 04:43:14,359 | INFO     | all data control threads have been joined
[2024-05-17 21:43:27] 2024-05-18 04:43:14,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 21:43:27] 2024-05-18 04:43:14,530 | INFO     | aborting loop
[2024-05-17 21:43:27] 2024-05-18 04:43:14,653 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 21:43:27] 2024-05-18 04:43:14,653 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 21:43:27] 2024-05-18 04:43:14,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 21:43:27] 2024-05-18 04:43:14,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 21:43:27] 2024-05-18 04:43:14,829 | INFO     | all payload control threads have been joined
[2024-05-17 21:43:27] 2024-05-18 04:43:15,325 | INFO     | [job] retrieve thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,365 | INFO     | [data] control thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,501 | INFO     | [job] validate thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,535 | INFO     | [job] job monitor thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,552 | INFO     | [payload] failed_post thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,593 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,835 | INFO     | [payload] control thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:15,933 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 21:43:27] 2024-05-18 04:43:15,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 21:43:27] 2024-05-18 04:43:16,017 | INFO     | all job control threads have been joined
[2024-05-17 21:43:27] 2024-05-18 04:43:16,058 | INFO     | [data] copytool_in thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:16,434 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:16,686 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:16,747 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:16,772 | INFO     | [payload] validate_post thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:16,786 | INFO     | [data] copytool_out thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:16,939 | INFO     | [job] queue monitor thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:17,023 | INFO     | [job] control thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:20,001 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 21:43:27] 2024-05-18 04:43:21,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139835732100928)>', '<ExcThread(monitor, started 139835452933888)>']
[2024-05-17 21:43:27] 2024-05-18 04:43:22,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 21:43:27] 2024-05-18 04:43:22,697 | INFO     | [monitor] control thread has ended
[2024-05-17 21:43:27] 2024-05-18 04:43:26,826 | INFO     | all workflow threads have been joined
[2024-05-17 21:43:27] 2024-05-18 04:43:26,827 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 21:43:27] 2024-05-18 04:43:26,827 | INFO     | traces error code: 0
[2024-05-17 21:43:27] 2024-05-18 04:43:26,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 21:43:27] 2024-05-18 04:43:26,931 [wrapper] ==== pilot stdout END ====
[2024-05-17 21:43:27] 2024-05-18 04:43:26,946 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 21:43:27] 2024-05-18 04:43:26,957 [wrapper] pilotpid: 197666
[2024-05-17 21:43:27] 2024-05-18 04:43:26,968 [wrapper] Pilot exit status: 0
[2024-05-17 21:43:27] 2024-05-18 04:43:26,995 [wrapper] pandaids: 6208213284
[2024-05-17 21:43:27] 2024-05-18 04:43:27,048 [wrapper] cleanup: SIGTERM to supervisor_pilot  51238 197668
[2024-05-17 21:43:27] 2024-05-18 04:43:27,059 [wrapper] Test setup, not cleaning
[2024-05-17 21:43:27] 2024-05-18 04:43:27,067 [wrapper] ==== wrapper stdout END ====
[2024-05-17 21:43:27] 2024-05-18 04:43:27,074 [wrapper] ==== wrapper stderr END ====
[2024-05-17 21:43:27] 2024-05-18 04:43:27,092 [wrapper] apfmon messages muted
[2024-05-17 21:43:27]  *** Error codes and diagnostics ***
[2024-05-17 21:43:27]     "exeErrorCode": 0,
[2024-05-17 21:43:27]     "exeErrorDiag": "",
[2024-05-17 21:43:27]     "pilotErrorCode": 0,
[2024-05-17 21:43:27]     "pilotErrorDiag": "",
[2024-05-17 21:43:27]  *** Listing of results directory ***
[2024-05-17 21:43:27] total 830208
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc    467845 May 17 10:32 pilot3.tar.gz
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc      5633 May 17 10:42 queuedata.json
[2024-05-17 21:43:27] -rwx------ 1 boinc boinc     32251 May 17 10:43 runpilot2-wrapper.sh
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc       100 May 17 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 21:43:27] -rwxr-xr-x 1 boinc boinc      7986 May 17 20:53 run_atlas
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc       105 May 17 20:53 job.xml
[2024-05-17 21:43:27] -rw-r--r-- 2 boinc boinc 604344390 May 17 20:53 EVNT.38776100._000476.pool.root.1
[2024-05-17 21:43:27] -rw-r--r-- 2 boinc boinc     17537 May 17 20:53 start_atlas.sh
[2024-05-17 21:43:27] drwxrwx--x 2 boinc boinc      4096 May 17 20:53 shared
[2024-05-17 21:43:27] -rw-r--r-- 2 boinc boinc    480005 May 17 20:53 input.tar.gz
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc      6652 May 17 20:53 init_data.xml
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc         0 May 17 20:53 boinc_lockfile
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc      2644 May 17 20:53 pandaJob.out
[2024-05-17 21:43:27] -rw------- 1 boinc boinc       424 May 17 20:53 setup.sh.local
[2024-05-17 21:43:27] -rw------- 1 boinc boinc   1019073 May 17 20:53 agis_schedconf.cvmfs.json
[2024-05-17 21:43:27] -rw------- 1 boinc boinc         0 May 17 20:53 agis_ddmendpoints.agis.ALL.json
[2024-05-17 21:43:27] -rw------- 1 boinc boinc   1324701 May 17 20:53 cric_ddmendpoints.json
[2024-05-17 21:43:27] drwx------ 4 boinc boinc      4096 May 17 20:53 pilot3
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc       530 May 17 21:42 boinc_task_state.xml
[2024-05-17 21:43:27] -rw------- 1 boinc boinc 240963504 May 17 21:42 HITS.38776104._013707.pool.root.1
[2024-05-17 21:43:27] -rw------- 1 boinc boinc        95 May 17 21:42 pilot_heartbeat.json
[2024-05-17 21:43:27] -rw------- 1 boinc boinc      1054 May 17 21:42 memory_monitor_summary.json
[2024-05-17 21:43:27] -rw------- 1 boinc boinc    335743 May 17 21:42 log.38776104._013707.job.log.tgz.1
[2024-05-17 21:43:27] -rw------- 1 boinc boinc      7770 May 17 21:43 heartbeat.json
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc      8192 May 17 21:43 boinc_mmap_file
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc        27 May 17 21:43 wrapper_checkpoint.txt
[2024-05-17 21:43:27] -rw------- 1 boinc boinc      4210 May 17 21:43 pilotlog.txt
[2024-05-17 21:43:27] -rw------- 1 boinc boinc    307531 May 17 21:43 log.38776104._013707.job.log.1
[2024-05-17 21:43:27] -rw------- 1 boinc boinc       357 May 17 21:43 output.list
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc       620 May 17 21:43 runtime_log
[2024-05-17 21:43:27] -rw------- 1 boinc boinc    665600 May 17 21:43 result.tar.gz
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc     11286 May 17 21:43 runtime_log.err
[2024-05-17 21:43:27] -rw------- 1 boinc boinc       655 May 17 21:43 HNRLDmcnGS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmlMRKDmhGsShn.diag
[2024-05-17 21:43:27] -rw-r--r-- 1 boinc boinc     21732 May 17 21:43 stderr.txt
[2024-05-17 21:43:27] HITS file was successfully produced:
[2024-05-17 21:43:27] -rw------- 1 boinc boinc 240963504 May 17 21:42 shared/HITS.pool.root.1
[2024-05-17 21:43:27]  *** Contents of shared directory: ***
[2024-05-17 21:43:27] total 826652
[2024-05-17 21:43:27] -rw-r--r-- 2 boinc boinc 604344390 May 17 20:53 ATLAS.root_0
[2024-05-17 21:43:27] -rw-r--r-- 2 boinc boinc     17537 May 17 20:53 start_atlas.sh
[2024-05-17 21:43:27] -rw-r--r-- 2 boinc boinc    480005 May 17 20:53 input.tar.gz
[2024-05-17 21:43:27] -rw------- 1 boinc boinc 240963504 May 17 21:42 HITS.pool.root.1
[2024-05-17 21:43:27] -rw------- 1 boinc boinc    665600 May 17 21:43 result.tar.gz
21:43:29 (191587): run_atlas exited; CPU time 24128.430253
21:43:29 (191587): called boinc_finish(0)

</stderr_txt>
]]>

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