Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:10:24 (1728402): wrapper (7.7.26015): starting
19:10:24 (1728402): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 19:10:24] Arguments: --nthreads 4
[2024-05-19 19:10:24] Threads: 4
[2024-05-19 19:10:24] Checking for CVMFS
[2024-05-19 19:10:24] No cvmfs_config command found, will try listing directly
[2024-05-19 19:10:24] CVMFS is ok
[2024-05-19 19:10:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 19:10:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 19:10:24] Further information can be found at the LHC@home message board.
[2024-05-19 19:10:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 19:10:24] Checking for apptainer binary...
[2024-05-19 19:10:24] which: no apptainer in ((null))
[2024-05-19 19:10:24] apptainer is not installed, using version from CVMFS
[2024-05-19 19:10:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 19:10:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-05-19 19:10:25] apptainer works
[2024-05-19 19:10:25] Set ATHENA_PROC_NUMBER=4
[2024-05-19 19:10:25] Set ATHENA_CORE_NUMBER=4
[2024-05-19 19:10:25] Starting ATLAS job with PandaID=6208213285
[2024-05-19 19:10:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 21:21:32]  *** The last 200 lines of the pilot log: ***
[2024-05-19 21:21:32] 2024-05-19 19:21:17,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 21:21:32] 2024-05-19 19:21:17,627 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 21:21:32] 2024-05-19 19:21:17,629 | INFO     | fitting pss+swap vs Time
[2024-05-19 21:21:32] 2024-05-19 19:21:17,629 | INFO     | model: linear, x: [1716138660.0, 1716138721.0, 1716138782.0, 1716138843.0, 1716138904.0, 1716138965.0, 1716139026.0, 1716139087.0, 1716139148.0, 1716139209.0, 1716
[2024-05-19 21:21:32] 2024-05-19 19:21:17,630 | INFO     | sum of square deviations: 665612480.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,630 | INFO     | sum of deviations: 49646055055.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,630 | INFO     | mean x: 1716142564.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,630 | INFO     | mean y: 2214073.434108527
[2024-05-19 21:21:32] 2024-05-19 19:21:17,630 | INFO     | -- intersect: -127999755202.40167
[2024-05-19 21:21:32] 2024-05-19 19:21:17,630 | INFO     | intersect: -127999755202.40167
[2024-05-19 21:21:32] 2024-05-19 19:21:17,631 | INFO     | chi2: 5.056665356759457
[2024-05-19 21:21:32] 2024-05-19 19:21:17,631 | INFO     | model: linear, x: [1716138660.0, 1716138721.0, 1716138782.0, 1716138843.0, 1716138904.0, 1716138965.0, 1716139026.0, 1716139087.0, 1716139148.0, 1716139209.0, 1716
[2024-05-19 21:21:32] 2024-05-19 19:21:17,631 | INFO     | sum of square deviations: 591173875.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | sum of deviations: 55409958444.5
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | mean x: 1716142411.5
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | mean y: 2225355.185483871
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | -- intersect: -160849570922.2786
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | intersect: -160849570922.2786
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | chi2: 4.259369109241386
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | current chi2=4.259369109241386 (change=15.76723376507982 %)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | right removable region: 123
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | model: linear, x: [1716138965.0, 1716139026.0, 1716139087.0, 1716139148.0, 1716139209.0, 1716139270.0, 1716139331.0, 1716139392.0, 1716139453.0, 1716139514.0, 1716
[2024-05-19 21:21:32] 2024-05-19 19:21:17,632 | INFO     | sum of square deviations: 591173875.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,633 | INFO     | sum of deviations: 20554519587.5
[2024-05-19 21:21:32] 2024-05-19 19:21:17,633 | INFO     | mean x: 1716142716.5
[2024-05-19 21:21:32] 2024-05-19 19:21:17,633 | INFO     | mean y: 2273424.7983870967
[2024-05-19 21:21:32] 2024-05-19 19:21:17,633 | INFO     | -- intersect: -59666278540.974304
[2024-05-19 21:21:32] 2024-05-19 19:21:17,633 | INFO     | intersect: -59666278540.974304
[2024-05-19 21:21:32] 2024-05-19 19:21:17,633 | INFO     | chi2: 2.516519470677084
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | current chi2=2.516519470677084 (change=50.23361656089923 %)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | model: linear, x: [1716139270.0, 1716139331.0, 1716139392.0, 1716139453.0, 1716139514.0, 1716139575.0, 1716139636.0, 1716139697.0, 1716139758.0, 1716139819.0, 1716
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | sum of square deviations: 522502820.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | sum of deviations: -3720481012.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | mean x: 1716142869.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | mean y: 2327350.899159664
[2024-05-19 21:21:32] 2024-05-19 19:21:17,634 | INFO     | -- intersect: 12222121605.777447
[2024-05-19 21:21:32] 2024-05-19 19:21:17,635 | INFO     | intersect: 12222121605.777447
[2024-05-19 21:21:32] 2024-05-19 19:21:17,635 | INFO     | chi2: 0.888862024012257
[2024-05-19 21:21:32] 2024-05-19 19:21:17,635 | INFO     | current chi2=0.888862024012257 (change=64.67891330190648 %)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,635 | INFO     | model: linear, x: [1716139575.0, 1716139636.0, 1716139697.0, 1716139758.0, 1716139819.0, 1716139880.0, 1716139941.0, 1716140002.0, 1716140063.0, 1716140124.0, 1716
[2024-05-19 21:21:32] 2024-05-19 19:21:17,635 | INFO     | sum of square deviations: 459366752.5
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | sum of deviations: -6380828079.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | mean x: 1716143021.5
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | mean y: 2333606.596491228
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | -- intersect: 23840396591.285618
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | intersect: 23840396591.285618
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | chi2: 0.8369426302820261
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | current chi2=0.8369426302820261 (change=5.841108330387503 %)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | left removable region: 30
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | model: linear, x: [1716140490.0, 1716140551.0, 1716140612.0, 1716140673.0, 1716140734.0, 1716140795.0, 1716140856.0, 1716140917.0, 1716140978.0, 1716141039.0, 1716
[2024-05-19 21:21:32] 2024-05-19 19:21:17,636 | INFO     | sum of square deviations: 249388862.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | sum of deviations: 212748846.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | mean x: 1716143296.0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | mean y: 2353654.3333333335
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | -- intersect: -1461655214.653913
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | intersect: -1461655214.653913
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | chi2: 7.099069415331193e-05
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | -- intersect: -1461655214.653913
[2024-05-19 21:21:32] 2024-05-19 19:21:17,637 | INFO     | current memory leak: 0.85 B/s (using 93 data points, chi2=0.00)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | ..............................
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . Timing measurements:
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . get job = 0 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . initial setup = 1 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . payload setup = 5 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . stage-in = 0 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . payload execution = 7813 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . stage-out = 0 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | . log creation = 0 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,638 | INFO     | ..............................
[2024-05-19 21:21:32] 2024-05-19 19:21:17,735 | INFO     | 
[2024-05-19 21:21:32] 2024-05-19 19:21:17,735 | INFO     | job summary report
[2024-05-19 21:21:32] 2024-05-19 19:21:17,735 | INFO     | --------------------------------------------------
[2024-05-19 21:21:32] 2024-05-19 19:21:17,735 | INFO     | PanDA job id: 6208213285
[2024-05-19 21:21:32] 2024-05-19 19:21:17,735 | INFO     | task id: 38776104
[2024-05-19 21:21:32] 2024-05-19 19:21:17,735 | INFO     | errors: (none)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | pilot state: finished 
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | transexitcode: 0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | exeerrorcode: 0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | exeerrordiag: 
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | exitcode: 0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | exitmsg: OK
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | cpuconsumptiontime: 28560 s
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | nevents: 400
[2024-05-19 21:21:32] 2024-05-19 19:21:17,736 | INFO     | neventsw: 0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | pid: 1740538
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | pgrp: 1740538
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | corecount: 4
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | event service: False
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | sizes: {0: 2392219, 1: 2392219, 5: 2392453, 11: 2392509, 7823: 2420157, 7824: 2429325, 7828: 2429439}
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | --------------------------------------------------
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | 
[2024-05-19 21:21:32] 2024-05-19 19:21:17,737 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2024-05-19 21:21:32] 2024-05-19 19:21:17,759 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,759 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,759 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,759 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,761 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,761 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 21:21:32] 2024-05-19 19:21:17,761 | INFO     | job 6208213285 has completed (purged errors)
[2024-05-19 21:21:32] 2024-05-19 19:21:17,761 | INFO     | overall cleanup function is called
[2024-05-19 21:21:32] 2024-05-19 19:21:18,768 | INFO     | --- collectZombieJob: --- 10, [1740538]
[2024-05-19 21:21:32] 2024-05-19 19:21:18,768 | INFO     | zombie collector waiting for pid 1740538
[2024-05-19 21:21:32] 2024-05-19 19:21:18,768 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 21:21:32] 2024-05-19 19:21:19,774 | INFO     | collected zombie processes
[2024-05-19 21:21:32] 2024-05-19 19:21:19,774 | INFO     | will now attempt to kill all subprocesses of pid=1740538
[2024-05-19 21:21:32] 2024-05-19 19:21:19,953 | INFO     | process IDs to be killed: [1740538] (in reverse order)
[2024-05-19 21:21:32] 2024-05-19 19:21:20,087 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 21:21:32] 2024-05-19 19:21:20,087 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 21:21:32] 2024-05-19 19:21:20,098 | INFO     | did not find any defunct processes belonging to 1740538
[2024-05-19 21:21:32] 2024-05-19 19:21:20,109 | INFO     | did not find any defunct processes belonging to 1740538
[2024-05-19 21:21:32] 2024-05-19 19:21:20,110 | INFO     | ready for new job
[2024-05-19 21:21:32] 2024-05-19 19:21:20,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 21:21:32] 2024-05-19 19:21:20,111 | INFO     | *************************************
[2024-05-19 21:21:32] 2024-05-19 19:21:20,111 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 21:21:32] 2024-05-19 19:21:20,111 | INFO     | *************************************
[2024-05-19 21:21:32] 2024-05-19 19:21:20,111 | INFO     | 
[2024-05-19 21:21:32] 2024-05-19 19:21:20,118 | INFO     | architecture information:
[2024-05-19 21:21:32] 2024-05-19 19:21:20,118 | INFO     | executing command: cat /etc/os-release
[2024-05-19 21:21:32] 2024-05-19 19:21:20,137 | INFO     | cat /etc/os-release:
[2024-05-19 21:21:32] NAME="CentOS Linux"
[2024-05-19 21:21:32] VERSION="7 (Core)"
[2024-05-19 21:21:32] ID="centos"
[2024-05-19 21:21:32] ID_LIKE="rhel fedora"
[2024-05-19 21:21:32] VERSION_ID="7"
[2024-05-19 21:21:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 21:21:32] ANSI_COLOR="0;31"
[2024-05-19 21:21:32] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 21:21:32] HOME_URL="https://www.centos.org/"
[2024-05-19 21:21:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 21:21:32] 
[2024-05-19 21:21:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 21:21:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 21:21:32] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 21:21:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 21:21:32] 
[2024-05-19 21:21:32] 2024-05-19 19:21:20,138 | INFO     | *************************************
[2024-05-19 21:21:32] 2024-05-19 19:21:20,640 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2024-05-19 21:21:32] 2024-05-19 19:21:20,657 | INFO     | sufficient remaining disk space (3109216583680 B)
[2024-05-19 21:21:32] 2024-05-19 19:21:20,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 21:21:32] 2024-05-19 19:21:20,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 21:21:32] 2024-05-19 19:21:20,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 21:21:32] 2024-05-19 19:21:20,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 21:21:32] 2024-05-19 19:21:20,658 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 21:21:32] 2024-05-19 19:21:20,659 | INFO     | aborting loop
[2024-05-19 21:21:32] 2024-05-19 19:21:20,659 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 21:21:32] 2024-05-19 19:21:20,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 21:21:32] 2024-05-19 19:21:20,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 21:21:32] 2024-05-19 19:21:20,838 | INFO     | all job control threads have been joined
[2024-05-19 21:21:32] 2024-05-19 19:21:21,172 | INFO     | all data control threads have been joined
[2024-05-19 21:21:32] 2024-05-19 19:21:21,184 | INFO     | all payload control threads have been joined
[2024-05-19 21:21:32] 2024-05-19 19:21:21,663 | INFO     | [job] retrieve thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:21,665 | INFO     | [job] job monitor thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:21,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 21:21:32] 2024-05-19 19:21:21,789 | INFO     | [job] validate thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:21,843 | INFO     | [job] control thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:21,879 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:21,905 | INFO     | [payload] validate_post thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:21,910 | INFO     | [data] copytool_in thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:22,131 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:22,177 | INFO     | [data] control thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:22,189 | INFO     | [payload] control thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:22,451 | INFO     | [payload] failed_post thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:22,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 21:21:32] 2024-05-19 19:21:22,836 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:23,097 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:23,706 | INFO     | [data] copytool_out thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:23,747 | INFO     | [job] queue monitor thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:24,664 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 21:21:32] 2024-05-19 19:21:26,613 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47564990555200)>', '<ExcThread(monitor, started 47565296912128)>']
[2024-05-19 21:21:32] 2024-05-19 19:21:26,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 21:21:32] 2024-05-19 19:21:26,686 | INFO     | [monitor] control thread has ended
[2024-05-19 21:21:32] 2024-05-19 19:21:31,638 | INFO     | all workflow threads have been joined
[2024-05-19 21:21:32] 2024-05-19 19:21:31,638 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 21:21:32] 2024-05-19 19:21:31,639 | INFO     | traces error code: 0
[2024-05-19 21:21:32] 2024-05-19 19:21:31,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 21:21:32] 2024-05-19 19:21:31,706 [wrapper] ==== pilot stdout END ====
[2024-05-19 21:21:32] 2024-05-19 19:21:31,708 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 21:21:32] 2024-05-19 19:21:31,710 [wrapper] pilotpid: 1733065
[2024-05-19 21:21:32] 2024-05-19 19:21:31,712 [wrapper] Pilot exit status: 0
[2024-05-19 21:21:32] 2024-05-19 19:21:31,721 [wrapper] pandaids: 6208213285
[2024-05-19 21:21:32] 2024-05-19 19:21:31,807 [wrapper] cleanup: SIGTERM to supervisor_pilot 2709795 1733066
[2024-05-19 21:21:32] 2024-05-19 19:21:31,809 [wrapper] Test setup, not cleaning
[2024-05-19 21:21:32] 2024-05-19 19:21:31,811 [wrapper] ==== wrapper stdout END ====
[2024-05-19 21:21:32] 2024-05-19 19:21:31,813 [wrapper] ==== wrapper stderr END ====
[2024-05-19 21:21:32] 2024-05-19 19:21:31,817 [wrapper] apfmon messages muted
[2024-05-19 21:21:32]  *** Error codes and diagnostics ***
[2024-05-19 21:21:32]     "exeErrorCode": 0,
[2024-05-19 21:21:32]     "exeErrorDiag": "",
[2024-05-19 21:21:32]     "pilotErrorCode": 0,
[2024-05-19 21:21:32]     "pilotErrorDiag": "",
[2024-05-19 21:21:32]  *** Listing of results directory ***
[2024-05-19 21:21:32] total 818476
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc    467845 May 17 19:32 pilot3.tar.gz
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc      5633 May 17 19:42 queuedata.json
[2024-05-19 21:21:32] -rwx------ 1 boinc boinc     32251 May 17 19:43 runpilot2-wrapper.sh
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc       100 May 19 19:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 21:21:32] -rwxr-xr-x 1 boinc boinc      7986 May 19 19:10 run_atlas
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc       105 May 19 19:10 job.xml
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc      6646 May 19 19:10 init_data.xml
[2024-05-19 21:21:32] -rw-r--r-- 2 boinc boinc 604344390 May 19 19:10 EVNT.38776100._000476.pool.root.1
[2024-05-19 21:21:32] -rw-r--r-- 2 boinc boinc     17537 May 19 19:10 start_atlas.sh
[2024-05-19 21:21:32] drwxrwx--x 2 boinc boinc      4096 May 19 19:10 shared
[2024-05-19 21:21:32] -rw-r--r-- 2 boinc boinc    480005 May 19 19:10 input.tar.gz
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc         0 May 19 19:10 boinc_lockfile
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc      2644 May 19 19:10 pandaJob.out
[2024-05-19 21:21:32] -rw------- 1 boinc boinc       424 May 19 19:10 setup.sh.local
[2024-05-19 21:21:32] -rw------- 1 boinc boinc   1014061 May 19 19:10 agis_schedconf.cvmfs.json
[2024-05-19 21:21:32] -rw------- 1 boinc boinc         0 May 19 19:10 agis_ddmendpoints.agis.ALL.json
[2024-05-19 21:21:32] -rw------- 1 boinc boinc   1324701 May 19 19:10 cric_ddmendpoints.json
[2024-05-19 21:21:32] drwx------ 4 boinc boinc      4096 May 19 19:10 pilot3
[2024-05-19 21:21:32] -rw------- 1 boinc boinc 228072990 May 19 21:20 HITS.38776104._013708.pool.root.1
[2024-05-19 21:21:32] -rw------- 1 boinc boinc        95 May 19 21:20 pilot_heartbeat.json
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc      8192 May 19 21:21 boinc_mmap_file
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc        27 May 19 21:21 wrapper_checkpoint.txt
[2024-05-19 21:21:32] -rw------- 1 boinc boinc      1040 May 19 21:21 memory_monitor_summary.json
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc       531 May 19 21:21 boinc_task_state.xml
[2024-05-19 21:21:32] -rw------- 1 boinc boinc    267783 May 19 21:21 log.38776104._013708.job.log.tgz.1
[2024-05-19 21:21:32] -rw------- 1 boinc boinc      7728 May 19 21:21 heartbeat.json
[2024-05-19 21:21:32] -rw------- 1 boinc boinc      4346 May 19 21:21 pilotlog.txt
[2024-05-19 21:21:32] -rw------- 1 boinc boinc    817122 May 19 21:21 log.38776104._013708.job.log.1
[2024-05-19 21:21:32] -rw------- 1 boinc boinc       357 May 19 21:21 output.list
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc       620 May 19 21:21 runtime_log
[2024-05-19 21:21:32] -rw------- 1 boinc boinc   1105920 May 19 21:21 result.tar.gz
[2024-05-19 21:21:32] -rw------- 1 boinc boinc       655 May 19 21:21 zxSLDmcnGS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmmMRKDmiGWKUo.diag
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc     11428 May 19 21:21 runtime_log.err
[2024-05-19 21:21:32] -rw-r--r-- 1 boinc boinc     21300 May 19 21:21 stderr.txt
[2024-05-19 21:21:32] HITS file was successfully produced:
[2024-05-19 21:21:32] -rw------- 1 boinc boinc 228072990 May 19 21:20 shared/HITS.pool.root.1
[2024-05-19 21:21:32]  *** Contents of shared directory: ***
[2024-05-19 21:21:32] total 814492
[2024-05-19 21:21:32] -rw-r--r-- 2 boinc boinc 604344390 May 19 19:10 ATLAS.root_0
[2024-05-19 21:21:32] -rw-r--r-- 2 boinc boinc     17537 May 19 19:10 start_atlas.sh
[2024-05-19 21:21:32] -rw-r--r-- 2 boinc boinc    480005 May 19 19:10 input.tar.gz
[2024-05-19 21:21:32] -rw------- 1 boinc boinc 228072990 May 19 21:20 HITS.pool.root.1
[2024-05-19 21:21:32] -rw------- 1 boinc boinc   1105920 May 19 21:21 result.tar.gz
21:21:34 (1728402): run_atlas exited; CPU time 28387.883906
21:21:34 (1728402): called boinc_finish(0)

</stderr_txt>
]]>

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