Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
04:52:33 (177257): wrapper (7.7.26015): starting
04:52:33 (177257): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 04:52:33] Arguments: --nthreads 12
[2024-05-18 04:52:33] Threads: 12
[2024-05-18 04:52:33] Checking for CVMFS
[2024-05-18 04:52:33] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 04:52:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 04:52:33] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 04:52:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 04:52:33] 2.10.1.0 2778 173623 140712 132878 1 59 23458246 45568001 3734 130560 0 521535392 99.757 353307992 14145 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-18 04:52:33] CVMFS is ok
[2024-05-18 04:52:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 04:52:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 04:52:33] Further information can be found at the LHC@home message board.
[2024-05-18 04:52:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 04:52:33] Checking for apptainer binary...
[2024-05-18 04:52:33] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 04:52:33] Running /usr/bin/apptainer --version
[2024-05-18 04:52:33] apptainer version 1.1.8-1.el7
[2024-05-18 04:52:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 04:52:34] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0163.triumf.lcg
[2024-05-18 04:52:34] apptainer works
[2024-05-18 04:52:34] Set ATHENA_PROC_NUMBER=12
[2024-05-18 04:52:34] Set ATHENA_CORE_NUMBER=12
[2024-05-18 04:52:34] Starting ATLAS job with PandaID=6208208934
[2024-05-18 04:52:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 05:57:42]  *** The last 200 lines of the pilot log: ***
[2024-05-18 05:57:42]  guid=4848279b-fbdd-4fc7-94e5-7d885587969e
[2024-05-18 05:57:42]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 05:57:42]  is_tar=False
[2024-05-18 05:57:42]  lfn=log.38776104._013620.job.log.tgz.1
[2024-05-18 05:57:42]  mtime=0
[2024-05-18 05:57:42]  protocol_id=None
[2024-05-18 05:57:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 05:57:42]  replicas=None
[2024-05-18 05:57:42]  scope=mc23_13p6TeV
[2024-05-18 05:57:42]  status=None
[2024-05-18 05:57:42]  status_code=0
[2024-05-18 05:57:42]  storage_token=
[2024-05-18 05:57:42]  surl=/home/boinc/slots/0/PanDA_Pilot-6208208934/log.38776104._013620.job.log.tgz.1
[2024-05-18 05:57:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/1c/log.38776104._013620.job.log.tgz.1
[2024-05-18 05:57:42]  workdir=None
[2024-05-18 05:57:42] ]
[2024-05-18 05:57:42] 2024-05-18 12:57:12,158 | INFO     | transferring file log.38776104._013620.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208208934/log.38776104._013620.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-18 05:57:42] 2024-05-18 12:57:12,158 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208208934/log.38776104._013620.job.log.tgz.1 /home/boinc/slots/0/log.38776104._013620.job.log.t
[2024-05-18 05:57:42] 2024-05-18 12:57:12,186 | INFO     | adding to output.list: log.38776104._013620.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/1c/log.38776104._013620.job.log.tg
[2024-05-18 05:57:42] 2024-05-18 12:57:12,187 | INFO     | summary of transferred files:
[2024-05-18 05:57:42] 2024-05-18 12:57:12,187 | INFO     |  -- lfn=log.38776104._013620.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 05:57:42] 2024-05-18 12:57:12,187 | INFO     | stage-out finished correctly
[2024-05-18 05:57:42] 2024-05-18 12:57:14,019 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 05:57:42] 2024-05-18 12:57:14,142 | INFO     | monitor loop #308: job 0:6208208934 is in state 'finished'
[2024-05-18 05:57:42] 2024-05-18 12:57:14,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:57:42] 2024-05-18 12:57:15,971 | INFO     | job 6208208934 has state=finished
[2024-05-18 05:57:42] 2024-05-18 12:57:15,972 | INFO     | preparing for final server update for job 6208208934 in state='finished'
[2024-05-18 05:57:42] 2024-05-18 12:57:15,972 | INFO     | this job has now completed (state=finished)
[2024-05-18 05:57:42] 2024-05-18 12:57:15,973 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 05:57:42] 2024-05-18 12:57:15,973 | INFO     | job 6208208934 has finished - writing final server update
[2024-05-18 05:57:42] 2024-05-18 12:57:15,973 | INFO     | total number of processed events: 400 (read)
[2024-05-18 05:57:42] 2024-05-18 12:57:15,980 | INFO     | executing command: lscpu
[2024-05-18 05:57:42] 2024-05-18 12:57:16,034 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-18 05:57:42] 2024-05-18 12:57:16,034 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 05:57:42] 2024-05-18 12:57:16,093 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 05:57:42] 2024-05-18 12:57:16,647 | INFO     | monitor loop #309: job 0:6208208934 is in state 'finished'
[2024-05-18 05:57:42] 2024-05-18 12:57:16,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:57:42] 2024-05-18 12:57:19,151 | INFO     | monitor loop #310: job 0:6208208934 is in state 'finished'
[2024-05-18 05:57:42] 2024-05-18 12:57:19,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 05:57:42] 2024-05-18 12:57:20,918 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-18 05:57:42] 2024-05-18 12:57:20,919 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208208934/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 05:57:42] 2024-05-18 12:57:20,920 | INFO     | extracted standard info from prmon json
[2024-05-18 05:57:42] 2024-05-18 12:57:20,920 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 05:57:42] 2024-05-18 12:57:20,921 | WARNING  | GPU info not found in prmon json
[2024-05-18 05:57:42] 2024-05-18 12:57:20,921 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 05:57:42] 2024-05-18 12:57:20,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 05:57:42] 2024-05-18 12:57:20,924 | INFO     | fitting pss+swap vs Time
[2024-05-18 05:57:42] 2024-05-18 12:57:20,924 | INFO     | model: linear, x: [1716033501.0, 1716033562.0, 1716033623.0, 1716033684.0, 1716033745.0, 1716033806.0, 1716033867.0, 1716033928.0, 1716033989.0, 1716034050.0, 1716
[2024-05-18 05:57:42] 2024-05-18 12:57:20,924 | INFO     | sum of square deviations: 54438230.0
[2024-05-18 05:57:42] 2024-05-18 12:57:20,925 | INFO     | sum of deviations: 15871462144.0
[2024-05-18 05:57:42] 2024-05-18 12:57:20,925 | INFO     | mean x: 1716035178.5
[2024-05-18 05:57:42] 2024-05-18 12:57:20,925 | INFO     | mean y: 2575188.535714286
[2024-05-18 05:57:42] 2024-05-18 12:57:20,925 | INFO     | -- intersect: -500307360923.18274
[2024-05-18 05:57:42] 2024-05-18 12:57:20,925 | INFO     | intersect: -500307360923.18274
[2024-05-18 05:57:42] 2024-05-18 12:57:20,925 | INFO     | chi2: 2.1198491826543457
[2024-05-18 05:57:42] 2024-05-18 12:57:20,926 | INFO     | -- intersect: -500307360923.18274
[2024-05-18 05:57:42] 2024-05-18 12:57:20,926 | INFO     | current memory leak: 291.55 B/s (using 56 data points, chi2=2.12)
[2024-05-18 05:57:42] 2024-05-18 12:57:20,926 | INFO     | ..............................
[2024-05-18 05:57:42] 2024-05-18 12:57:20,926 | INFO     | . Timing measurements:
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . get job = 0 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . initial setup = 2 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . payload setup = 6 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . stage-in = 0 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . payload execution = 3837 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . stage-out = 0 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | . log creation = 0 s
[2024-05-18 05:57:42] 2024-05-18 12:57:20,927 | INFO     | ..............................
[2024-05-18 05:57:42] 2024-05-18 12:57:21,122 | INFO     | 
[2024-05-18 05:57:42] 2024-05-18 12:57:21,123 | INFO     | job summary report
[2024-05-18 05:57:42] 2024-05-18 12:57:21,123 | INFO     | --------------------------------------------------
[2024-05-18 05:57:42] 2024-05-18 12:57:21,123 | INFO     | PanDA job id: 6208208934
[2024-05-18 05:57:42] 2024-05-18 12:57:21,123 | INFO     | task id: 38776104
[2024-05-18 05:57:42] 2024-05-18 12:57:21,123 | INFO     | errors: (none)
[2024-05-18 05:57:42] 2024-05-18 12:57:21,123 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | pilot state: finished 
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | transexitcode: 0
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | exeerrorcode: 0
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | exeerrordiag: 
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | exitcode: 0
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | exitmsg: OK
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | cpuconsumptiontime: 34179 s
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | nevents: 400
[2024-05-18 05:57:42] 2024-05-18 12:57:21,124 | INFO     | neventsw: 0
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | pid: 187891
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | pgrp: 187891
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | corecount: 12
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | event service: False
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | sizes: {0: 2392029, 1: 2392228, 6: 2392434, 11: 2392462, 3847: 2418092, 3849: 2427046, 3851: 2427230, 3857: 2427400}
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | --------------------------------------------------
[2024-05-18 05:57:42] 2024-05-18 12:57:21,125 | INFO     | 
[2024-05-18 05:57:42] 2024-05-18 12:57:21,126 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-18 05:57:42] 2024-05-18 12:57:21,157 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,158 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,158 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,158 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,158 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,159 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,160 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 05:57:42] 2024-05-18 12:57:21,161 | INFO     | job 6208208934 has completed (purged errors)
[2024-05-18 05:57:42] 2024-05-18 12:57:21,161 | INFO     | overall cleanup function is called
[2024-05-18 05:57:42] 2024-05-18 12:57:22,169 | INFO     | --- collectZombieJob: --- 10, [187891]
[2024-05-18 05:57:42] 2024-05-18 12:57:22,169 | INFO     | zombie collector waiting for pid 187891
[2024-05-18 05:57:42] 2024-05-18 12:57:22,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 05:57:42] 2024-05-18 12:57:23,175 | INFO     | collected zombie processes
[2024-05-18 05:57:42] 2024-05-18 12:57:23,175 | INFO     | will now attempt to kill all subprocesses of pid=187891
[2024-05-18 05:57:42] 2024-05-18 12:57:23,274 | INFO     | process IDs to be killed: [187891] (in reverse order)
[2024-05-18 05:57:42] 2024-05-18 12:57:23,370 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 05:57:42] 2024-05-18 12:57:23,371 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 05:57:42] 2024-05-18 12:57:23,378 | INFO     | did not find any defunct processes belonging to 187891
[2024-05-18 05:57:42] 2024-05-18 12:57:23,383 | INFO     | did not find any defunct processes belonging to 187891
[2024-05-18 05:57:42] 2024-05-18 12:57:23,383 | INFO     | ready for new job
[2024-05-18 05:57:42] 2024-05-18 12:57:23,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 05:57:42] 2024-05-18 12:57:23,385 | INFO     | *************************************
[2024-05-18 05:57:42] 2024-05-18 12:57:23,385 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 05:57:42] 2024-05-18 12:57:23,385 | INFO     | *************************************
[2024-05-18 05:57:42] 2024-05-18 12:57:23,385 | INFO     | 
[2024-05-18 05:57:42] 2024-05-18 12:57:23,388 | INFO     | architecture information:
[2024-05-18 05:57:42] 2024-05-18 12:57:23,388 | INFO     | executing command: cat /etc/os-release
[2024-05-18 05:57:42] 2024-05-18 12:57:23,410 | INFO     | cat /etc/os-release:
[2024-05-18 05:57:42] NAME="CentOS Linux"
[2024-05-18 05:57:42] VERSION="7 (Core)"
[2024-05-18 05:57:42] ID="centos"
[2024-05-18 05:57:42] ID_LIKE="rhel fedora"
[2024-05-18 05:57:42] VERSION_ID="7"
[2024-05-18 05:57:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 05:57:42] ANSI_COLOR="0;31"
[2024-05-18 05:57:42] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 05:57:42] HOME_URL="https://www.centos.org/"
[2024-05-18 05:57:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 05:57:42] 
[2024-05-18 05:57:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 05:57:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 05:57:42] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 05:57:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 05:57:42] 
[2024-05-18 05:57:42] 2024-05-18 12:57:23,410 | INFO     | *************************************
[2024-05-18 05:57:42] 2024-05-18 12:57:23,914 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-18 05:57:42] 2024-05-18 12:57:23,941 | INFO     | sufficient remaining disk space (2241626898432 B)
[2024-05-18 05:57:42] 2024-05-18 12:57:23,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 05:57:42] 2024-05-18 12:57:23,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 05:57:42] 2024-05-18 12:57:24,053 | INFO     | all payload control threads have been joined
[2024-05-18 05:57:42] 2024-05-18 12:57:24,058 | INFO     | all data control threads have been joined
[2024-05-18 05:57:42] 2024-05-18 12:57:24,163 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-18 05:57:42] 2024-05-18 12:57:24,163 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-18 05:57:42] 2024-05-18 12:57:24,163 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:57:42] 2024-05-18 12:57:24,163 | INFO     | will abort loop
[2024-05-18 05:57:42] 2024-05-18 12:57:24,169 | INFO     | all job control threads have been joined
[2024-05-18 05:57:42] 2024-05-18 12:57:24,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 05:57:42] 2024-05-18 12:57:24,634 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 05:57:42] 2024-05-18 12:57:24,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 05:57:42] 2024-05-18 12:57:24,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 05:57:42] 2024-05-18 12:57:24,948 | INFO     | [job] retrieve thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,059 | INFO     | [payload] control thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,064 | INFO     | [data] control thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,100 | INFO     | [job] validate thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,140 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,169 | INFO     | [job] job monitor thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,176 | INFO     | [job] control thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 05:57:42] 2024-05-18 12:57:25,345 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,429 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:25,808 | INFO     | [payload] failed_post thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:26,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 05:57:42] 2024-05-18 12:57:26,107 | INFO     | [data] copytool_in thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:26,318 | INFO     | [payload] validate_post thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:27,012 | INFO     | [job] queue monitor thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:27,285 | INFO     | [data] copytool_out thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:28,610 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:34,896 | INFO     | job.realtimelogging is not enabled
[2024-05-18 05:57:42] 2024-05-18 12:57:35,904 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 05:57:42] 2024-05-18 12:57:36,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140578361689920)>', '<ExcThread(monitor, started 140577945405184)>']
[2024-05-18 05:57:42] 2024-05-18 12:57:37,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 05:57:42] 2024-05-18 12:57:37,705 | INFO     | [monitor] control thread has ended
[2024-05-18 05:57:42] 2024-05-18 12:57:41,864 | INFO     | all workflow threads have been joined
[2024-05-18 05:57:42] 2024-05-18 12:57:41,864 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 05:57:42] 2024-05-18 12:57:41,864 | INFO     | traces error code: 0
[2024-05-18 05:57:42] 2024-05-18 12:57:41,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 05:57:42] 2024-05-18 12:57:41,940 [wrapper] ==== pilot stdout END ====
[2024-05-18 05:57:42] 2024-05-18 12:57:41,944 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 05:57:42] 2024-05-18 12:57:41,949 [wrapper] pilotpid: 181458
[2024-05-18 05:57:42] 2024-05-18 12:57:41,952 [wrapper] Pilot exit status: 0
[2024-05-18 05:57:42] 2024-05-18 12:57:41,966 [wrapper] pandaids: 6208208934
[2024-05-18 05:57:42] 2024-05-18 12:57:42,023 [wrapper] cleanup: SIGTERM to supervisor_pilot 228635 181459
[2024-05-18 05:57:42] 2024-05-18 12:57:42,027 [wrapper] Test setup, not cleaning
[2024-05-18 05:57:42] 2024-05-18 12:57:42,031 [wrapper] ==== wrapper stdout END ====
[2024-05-18 05:57:42] 2024-05-18 12:57:42,035 [wrapper] ==== wrapper stderr END ====
[2024-05-18 05:57:42] 2024-05-18 12:57:42,043 [wrapper] apfmon messages muted
[2024-05-18 05:57:42]  *** Error codes and diagnostics ***
[2024-05-18 05:57:42]     "exeErrorCode": 0,
[2024-05-18 05:57:42]     "exeErrorDiag": "",
[2024-05-18 05:57:42]     "pilotErrorCode": 0,
[2024-05-18 05:57:42]     "pilotErrorDiag": "",
[2024-05-18 05:57:42]  *** Listing of results directory ***
[2024-05-18 05:57:42] total 814116
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc    467845 May 17 10:32 pilot3.tar.gz
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc      5633 May 17 10:33 queuedata.json
[2024-05-18 05:57:42] -rwx------ 1 boinc boinc     32251 May 17 10:34 runpilot2-wrapper.sh
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc       100 May 18 04:52 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 05:57:42] -rwxr-xr-x 1 boinc boinc      7986 May 18 04:52 run_atlas
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc       105 May 18 04:52 job.xml
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc      6623 May 18 04:52 init_data.xml
[2024-05-18 05:57:42] -rw-r--r-- 2 boinc boinc 600762518 May 18 04:52 EVNT.38776100._000181.pool.root.1
[2024-05-18 05:57:42] -rw-r--r-- 2 boinc boinc     17537 May 18 04:52 start_atlas.sh
[2024-05-18 05:57:42] drwxrwx--x 2 boinc boinc      4096 May 18 04:52 shared
[2024-05-18 05:57:42] -rw-r--r-- 2 boinc boinc    480012 May 18 04:52 input.tar.gz
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc         0 May 18 04:52 boinc_lockfile
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc      2642 May 18 04:52 pandaJob.out
[2024-05-18 05:57:42] -rw------- 1 boinc boinc       424 May 18 04:52 setup.sh.local
[2024-05-18 05:57:42] -rw------- 1 boinc boinc   1019073 May 18 04:52 agis_schedconf.cvmfs.json
[2024-05-18 05:57:42] -rw------- 1 boinc boinc         0 May 18 04:52 agis_ddmendpoints.agis.ALL.json
[2024-05-18 05:57:42] -rw------- 1 boinc boinc   1324701 May 18 04:52 cric_ddmendpoints.json
[2024-05-18 05:57:42] drwx------ 4 boinc boinc      4096 May 18 04:52 pilot3
[2024-05-18 05:57:42] -rw------- 1 boinc boinc 227861103 May 18 05:56 HITS.38776104._013620.pool.root.1
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc       530 May 18 05:56 boinc_task_state.xml
[2024-05-18 05:57:42] -rw------- 1 boinc boinc        95 May 18 05:56 pilot_heartbeat.json
[2024-05-18 05:57:42] -rw------- 1 boinc boinc      1037 May 18 05:57 memory_monitor_summary.json
[2024-05-18 05:57:42] -rw------- 1 boinc boinc    346914 May 18 05:57 log.38776104._013620.job.log.tgz.1
[2024-05-18 05:57:42] -rw------- 1 boinc boinc      7750 May 18 05:57 heartbeat.json
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc        27 May 18 05:57 wrapper_checkpoint.txt
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc      8192 May 18 05:57 boinc_mmap_file
[2024-05-18 05:57:42] -rw------- 1 boinc boinc      4468 May 18 05:57 pilotlog.txt
[2024-05-18 05:57:42] -rw------- 1 boinc boinc    397869 May 18 05:57 log.38776104._013620.job.log.1
[2024-05-18 05:57:42] -rw------- 1 boinc boinc       357 May 18 05:57 output.list
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc       620 May 18 05:57 runtime_log
[2024-05-18 05:57:42] -rw------- 1 boinc boinc    768000 May 18 05:57 result.tar.gz
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc     11286 May 18 05:57 runtime_log.err
[2024-05-18 05:57:42] -rw------- 1 boinc boinc       651 May 18 05:57 N6hLDmYeGS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm1LRKDmURSuNn.diag
[2024-05-18 05:57:42] -rw-r--r-- 1 boinc boinc     21774 May 18 05:57 stderr.txt
[2024-05-18 05:57:42] HITS file was successfully produced:
[2024-05-18 05:57:42] -rw------- 1 boinc boinc 227861103 May 18 05:56 shared/HITS.pool.root.1
[2024-05-18 05:57:42]  *** Contents of shared directory: ***
[2024-05-18 05:57:42] total 810460
[2024-05-18 05:57:42] -rw-r--r-- 2 boinc boinc 600762518 May 18 04:52 ATLAS.root_0
[2024-05-18 05:57:42] -rw-r--r-- 2 boinc boinc     17537 May 18 04:52 start_atlas.sh
[2024-05-18 05:57:42] -rw-r--r-- 2 boinc boinc    480012 May 18 04:52 input.tar.gz
[2024-05-18 05:57:42] -rw------- 1 boinc boinc 227861103 May 18 05:56 HITS.pool.root.1
[2024-05-18 05:57:42] -rw------- 1 boinc boinc    768000 May 18 05:57 result.tar.gz
05:57:43 (177257): run_atlas exited; CPU time 34088.062194
05:57:43 (177257): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN