Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:15:18 (248641): wrapper (7.7.26015): starting
17:15:18 (248641): wrapper: running run_atlas (--nthreads 4)
[2024-05-21 17:15:18] Arguments: --nthreads 4
[2024-05-21 17:15:18] Threads: 4
[2024-05-21 17:15:18] Checking for CVMFS
[2024-05-21 17:15:18] No cvmfs_config command found, will try listing directly
[2024-05-21 17:15:18] CVMFS is ok
[2024-05-21 17:15:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-21 17:15:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-21 17:15:18] Further information can be found at the LHC@home message board.
[2024-05-21 17:15:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-21 17:15:18] Checking for apptainer binary...
[2024-05-21 17:15:18] which: no apptainer in ((null))
[2024-05-21 17:15:18] apptainer is not installed, using version from CVMFS
[2024-05-21 17:15:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-21 17:15:19] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2024-05-21 17:15:19] apptainer works
[2024-05-21 17:15:19] Set ATHENA_PROC_NUMBER=4
[2024-05-21 17:15:19] Set ATHENA_CORE_NUMBER=4
[2024-05-21 17:15:19] Starting ATLAS job with PandaID=6208189128
[2024-05-21 17:15:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-22 11:45:21]  *** The last 200 lines of the pilot log: ***
[2024-05-22 11:45:21] 2024-05-22 09:34:06,717 | WARNING  | process 260916 is no longer using CPU - aborting
[2024-05-22 11:45:21] 2024-05-22 09:34:06,717 | INFO     | will not send any job update
[2024-05-22 11:45:21] 2024-05-22 09:34:07,001 | INFO     | job 6208189128 has state=finished
[2024-05-22 11:45:21] 2024-05-22 09:34:07,001 | INFO     | preparing for final server update for job 6208189128 in state='finished'
[2024-05-22 11:45:21] 2024-05-22 09:34:07,002 | INFO     | this job has now completed (state=finished)
[2024-05-22 11:45:21] 2024-05-22 09:34:07,002 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-22 11:45:21] 2024-05-22 09:34:07,002 | INFO     | job 6208189128 has finished - writing final server update
[2024-05-22 11:45:21] 2024-05-22 09:34:07,002 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_361227/.job.ad'
[2024-05-22 11:45:21] 2024-05-22 09:34:07,003 | INFO     | total number of processed events: 1950 (read)
[2024-05-22 11:45:21] 2024-05-22 09:34:07,006 | INFO     | executing command: lscpu
[2024-05-22 11:45:21] 2024-05-22 09:34:07,031 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-05-22 11:45:21] 2024-05-22 09:34:07,032 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-22 11:45:21] 2024-05-22 09:34:07,057 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-22 11:45:21] 2024-05-22 09:34:09,221 | INFO     | monitor loop #5067: job 0:6208189128 is in state 'finished'
[2024-05-22 11:45:21] 2024-05-22 09:34:09,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,329 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-22 11:45:21] 2024-05-22 09:34:11,330 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6208189128/memory_monitor_summary.json (trf name=prmon)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,332 | INFO     | extracted standard info from prmon json
[2024-05-22 11:45:21] 2024-05-22 09:34:11,332 | INFO     | extracted standard memory fields from prmon json
[2024-05-22 11:45:21] 2024-05-22 09:34:11,332 | WARNING  | GPU info not found in prmon json
[2024-05-22 11:45:21] 2024-05-22 09:34:11,344 | INFO     | fitting pss+swap vs Time
[2024-05-22 11:45:21] 2024-05-22 09:34:11,345 | INFO     | model: linear, x: [1716304554.0, 1716304615.0, 1716304676.0, 1716304737.0, 1716304798.0, 1716304859.0, 1716304920.0, 1716304981.0, 1716305042.0, 1716305103.0, 1716
[2024-05-22 11:45:21] 2024-05-22 09:34:11,346 | INFO     | sum of square deviations: 391701409380.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,361 | INFO     | sum of deviations: 1799001515685.9995
[2024-05-22 11:45:21] 2024-05-22 09:34:11,361 | INFO     | mean x: 1716337494.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,362 | INFO     | mean y: 2635500.6743755783
[2024-05-22 11:45:21] 2024-05-22 09:34:11,362 | INFO     | -- intersect: -7880138671.678055
[2024-05-22 11:45:21] 2024-05-22 09:34:11,362 | INFO     | intersect: -7880138671.678055
[2024-05-22 11:45:21] 2024-05-22 09:34:11,362 | INFO     | chi2: 13.75698342698997
[2024-05-22 11:45:21] 2024-05-22 09:34:11,363 | INFO     | model: linear, x: [1716304554.0, 1716304615.0, 1716304676.0, 1716304737.0, 1716304798.0, 1716304859.0, 1716304920.0, 1716304981.0, 1716305042.0, 1716305103.0, 1716
[2024-05-22 11:45:21] 2024-05-22 09:34:11,364 | INFO     | sum of square deviations: 386291242825.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,379 | INFO     | sum of deviations: 2122655321481.0007
[2024-05-22 11:45:21] 2024-05-22 09:34:11,379 | INFO     | mean x: 1716337341.5
[2024-05-22 11:45:21] 2024-05-22 09:34:11,379 | INFO     | mean y: 2644622.0501858736
[2024-05-22 11:45:21] 2024-05-22 09:34:11,379 | INFO     | -- intersect: -9428562165.730892
[2024-05-22 11:45:21] 2024-05-22 09:34:11,379 | INFO     | intersect: -9428562165.730892
[2024-05-22 11:45:21] 2024-05-22 09:34:11,380 | INFO     | chi2: 10.848867107211895
[2024-05-22 11:45:21] 2024-05-22 09:34:11,380 | INFO     | current chi2=10.848867107211895 (change=21.139200575560857 %)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,380 | INFO     | right removable region: 1075
[2024-05-22 11:45:21] 2024-05-22 09:34:11,381 | INFO     | model: linear, x: [1716304859.0, 1716304920.0, 1716304981.0, 1716305042.0, 1716305103.0, 1716305164.0, 1716305225.0, 1716305286.0, 1716305347.0, 1716305408.0, 1716
[2024-05-22 11:45:21] 2024-05-22 09:34:11,381 | INFO     | sum of square deviations: 386291242825.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,397 | INFO     | sum of deviations: 1471816499191.0005
[2024-05-22 11:45:21] 2024-05-22 09:34:11,397 | INFO     | mean x: 1716337646.5
[2024-05-22 11:45:21] 2024-05-22 09:34:11,397 | INFO     | mean y: 2644719.7639405206
[2024-05-22 11:45:21] 2024-05-22 09:34:11,397 | INFO     | -- intersect: -6536809935.815076
[2024-05-22 11:45:21] 2024-05-22 09:34:11,397 | INFO     | intersect: -6536809935.815076
[2024-05-22 11:45:21] 2024-05-22 09:34:11,398 | INFO     | chi2: 10.80204394527825
[2024-05-22 11:45:21] 2024-05-22 09:34:11,398 | INFO     | current chi2=10.80204394527825 (change=21.479559798802942 %)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,398 | INFO     | left removable region: 10
[2024-05-22 11:45:21] 2024-05-22 09:34:11,399 | INFO     | model: linear, x: [1716305164.0, 1716305225.0, 1716305286.0, 1716305347.0, 1716305408.0, 1716305469.0, 1716305530.0, 1716305591.0, 1716305652.0, 1716305713.0, 1716
[2024-05-22 11:45:21] 2024-05-22 09:34:11,399 | INFO     | sum of square deviations: 374564715980.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,415 | INFO     | sum of deviations: 1594261947787.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,415 | INFO     | mean x: 1716337616.0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,415 | INFO     | mean y: 2663569.607511737
[2024-05-22 11:45:21] 2024-05-22 09:34:11,416 | INFO     | -- intersect: -7302594064.137043
[2024-05-22 11:45:21] 2024-05-22 09:34:11,416 | INFO     | intersect: -7302594064.137043
[2024-05-22 11:45:21] 2024-05-22 09:34:11,416 | INFO     | chi2: 5.3818577130807
[2024-05-22 11:45:21] 2024-05-22 09:34:11,416 | INFO     | -- intersect: -7302594064.137043
[2024-05-22 11:45:21] 2024-05-22 09:34:11,417 | INFO     | current memory leak: 4.26 B/s (using 1065 data points, chi2=5.38)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,417 | INFO     | ..............................
[2024-05-22 11:45:21] 2024-05-22 09:34:11,417 | INFO     | . Timing measurements:
[2024-05-22 11:45:21] 2024-05-22 09:34:11,417 | INFO     | . get job = 0 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | . initial setup = 1 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | . payload setup = 6 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | . stage-in = 0 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | . payload execution = 65886 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | . stage-out = 2 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | . log creation = 0 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,418 | INFO     | ..............................
[2024-05-22 11:45:21] 2024-05-22 09:34:11,476 | INFO     | 
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | job summary report
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | --------------------------------------------------
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | PanDA job id: 6208189128
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | task id: 38734053
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | errors: (none)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | pilot state: finished 
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | transexitcode: 0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | exeerrorcode: 0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | exeerrordiag: 
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | exitcode: 0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | exitmsg: OK
[2024-05-22 11:45:21] 2024-05-22 09:34:11,477 | INFO     | cpuconsumptiontime: 258203 s
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | nevents: 1950
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | neventsw: 0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | pid: 260916
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | pgrp: 260916
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | corecount: 4
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | event service: False
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | sizes: {0: 2392650, 5: 2392856, 11: 2392912, 65896: 2467530, 65899: 2476512, 65901: 2476568, 65907: 2476918}
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | --------------------------------------------------
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | 
[2024-05-22 11:45:21] 2024-05-22 09:34:11,478 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | job 6208189128 has completed (purged errors)
[2024-05-22 11:45:21] 2024-05-22 09:34:11,496 | INFO     | overall cleanup function is called
[2024-05-22 11:45:21] 2024-05-22 09:34:12,507 | INFO     | --- collectZombieJob: --- 10, [260916]
[2024-05-22 11:45:21] 2024-05-22 09:34:12,508 | INFO     | zombie collector waiting for pid 260916
[2024-05-22 11:45:21] 2024-05-22 09:34:12,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-22 11:45:21] 2024-05-22 09:34:13,513 | INFO     | collected zombie processes
[2024-05-22 11:45:21] 2024-05-22 09:34:13,513 | INFO     | will now attempt to kill all subprocesses of pid=260916
[2024-05-22 11:45:21] 2024-05-22 09:34:13,645 | INFO     | process IDs to be killed: [260916] (in reverse order)
[2024-05-22 11:45:21] 2024-05-22 09:34:13,724 | WARNING  | found no corresponding commands to process id(s)
[2024-05-22 11:45:21] 2024-05-22 09:34:13,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-22 11:45:21] 2024-05-22 09:34:13,730 | INFO     | did not find any defunct processes belonging to 260916
[2024-05-22 11:45:21] 2024-05-22 09:34:13,734 | INFO     | did not find any defunct processes belonging to 260916
[2024-05-22 11:45:21] 2024-05-22 09:34:13,734 | INFO     | ready for new job
[2024-05-22 11:45:21] 2024-05-22 09:34:13,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-22 11:45:21] 2024-05-22 09:34:13,738 | INFO     | *************************************
[2024-05-22 11:45:21] 2024-05-22 09:34:13,738 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-22 11:45:21] 2024-05-22 09:34:13,738 | INFO     | *************************************
[2024-05-22 11:45:21] 2024-05-22 09:34:13,738 | INFO     | 
[2024-05-22 11:45:21] 2024-05-22 09:34:13,740 | INFO     | architecture information:
[2024-05-22 11:45:21] 2024-05-22 09:34:13,740 | INFO     | executing command: cat /etc/os-release
[2024-05-22 11:45:21] 2024-05-22 09:34:13,751 | INFO     | cat /etc/os-release:
[2024-05-22 11:45:21] NAME="CentOS Linux"
[2024-05-22 11:45:21] VERSION="7 (Core)"
[2024-05-22 11:45:21] ID="centos"
[2024-05-22 11:45:21] ID_LIKE="rhel fedora"
[2024-05-22 11:45:21] VERSION_ID="7"
[2024-05-22 11:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-22 11:45:21] ANSI_COLOR="0;31"
[2024-05-22 11:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-22 11:45:21] HOME_URL="https://www.centos.org/"
[2024-05-22 11:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-22 11:45:21] 
[2024-05-22 11:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-22 11:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-22 11:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-22 11:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-22 11:45:21] 
[2024-05-22 11:45:21] 2024-05-22 09:34:13,751 | INFO     | *************************************
[2024-05-22 11:45:21] 2024-05-22 09:34:14,252 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-05-22 11:45:21] 2024-05-22 09:34:14,267 | INFO     | sufficient remaining disk space (1625557041152 B)
[2024-05-22 11:45:21] 2024-05-22 09:34:14,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-22 11:45:21] 2024-05-22 09:34:14,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-22 11:45:21] 2024-05-22 09:34:14,268 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-22 11:45:21] 2024-05-22 09:34:14,268 | INFO     | found 0 job(s) in 20 queues
[2024-05-22 11:45:21] 2024-05-22 09:34:14,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-22 11:45:21] 2024-05-22 09:34:14,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-22 11:45:21] 2024-05-22 09:34:14,387 | INFO     | all data control threads have been joined
[2024-05-22 11:45:21] 2024-05-22 09:34:14,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-22 11:45:21] 2024-05-22 09:34:14,593 | INFO     | all job control threads have been joined
[2024-05-22 11:45:21] 2024-05-22 09:34:15,236 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-22 11:45:21] 2024-05-22 09:34:15,236 | INFO     | aborting loop
[2024-05-22 11:45:21] 2024-05-22 09:34:15,273 | INFO     | [job] retrieve thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:15,354 | INFO     | [payload] execute_payloads thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:15,392 | INFO     | [data] control thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:15,598 | INFO     | [job] control thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:15,660 | INFO     | all payload control threads have been joined
[2024-05-22 11:45:21] 2024-05-22 09:34:15,793 | INFO     | [payload] failed_post thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,005 | INFO     | [job] create_data_payload thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,006 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,241 | INFO     | [job] job monitor thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,311 | INFO     | [payload] validate_post thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,437 | INFO     | [payload] validate_pre thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,473 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-22 11:45:21] 2024-05-22 09:34:16,487 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-22 11:45:21] 2024-05-22 09:34:16,510 | INFO     | [data] copytool_out thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,555 | INFO     | [data] copytool_in thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,634 | INFO     | [job] validate thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:16,665 | INFO     | [payload] control thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:17,492 | INFO     | [job] queue monitor thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:20,478 | INFO     | [data] queue_monitor thread has finished
[2024-05-22 11:45:21] 2024-05-22 09:34:22,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47376782902336)>', '<ExcThread(monitor, started 47376954152704)>']
[2024-05-22 11:45:21] 2024-05-22 09:34:23,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-22 11:45:21] 2024-05-22 09:34:23,314 | INFO     | [monitor] control thread has ended
[2024-05-22 11:45:21] 2024-05-22 09:34:27,430 | INFO     | all workflow threads have been joined
[2024-05-22 11:45:21] 2024-05-22 09:34:27,431 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-22 11:45:21] 2024-05-22 09:34:27,431 | INFO     | traces error code: 0
[2024-05-22 11:45:21] 2024-05-22 09:34:27,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-22 11:45:21] 2024-05-22 09:34:27,524 [wrapper] ==== pilot stdout END ====
[2024-05-22 11:45:21] 2024-05-22 09:34:27,526 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-22 11:45:21] 2024-05-22 09:34:27,528 [wrapper] pilotpid: 253408
[2024-05-22 11:45:21] 2024-05-22 09:34:27,529 [wrapper] Pilot exit status: 0
[2024-05-22 11:45:21] 2024-05-22 09:34:27,543 [wrapper] pandaids: 6208189128
[2024-05-22 11:45:21] 2024-05-22 09:34:27,593 [wrapper] cleanup: SIGTERM to supervisor_pilot 1261271 253409
[2024-05-22 11:45:21] 2024-05-22 09:34:27,595 [wrapper] Test setup, not cleaning
[2024-05-22 11:45:21] 2024-05-22 09:34:27,597 [wrapper] ==== wrapper stdout END ====
[2024-05-22 11:45:21] 2024-05-22 09:34:27,599 [wrapper] ==== wrapper stderr END ====
[2024-05-22 11:45:21] 2024-05-22 09:34:27,603 [wrapper] apfmon messages muted
[2024-05-22 11:45:21]  *** Error codes and diagnostics ***
[2024-05-22 11:45:21]     "exeErrorCode": 0,
[2024-05-22 11:45:21]     "exeErrorDiag": "",
[2024-05-22 11:45:21]     "pilotErrorCode": 0,
[2024-05-22 11:45:21]     "pilotErrorDiag": "",
[2024-05-22 11:45:21]  *** Listing of results directory ***
[2024-05-22 11:45:21] total 1490352
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc     467845 May 17 18:26 pilot3.tar.gz
[2024-05-22 11:45:21] -rwx------ 1 boinc boinc      32251 May 17 18:38 runpilot2-wrapper.sh
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc       5633 May 17 18:38 queuedata.json
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc        100 May 21 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-22 11:45:21] -rwxr-xr-x 1 boinc boinc       7986 May 21 17:15 run_atlas
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc        105 May 21 17:15 job.xml
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc       6456 May 21 17:15 init_data.xml
[2024-05-22 11:45:21] -rw-r--r-- 2 boinc boinc  326905140 May 21 17:15 EVNT.38734051._000239.pool.root.1
[2024-05-22 11:45:21] drwxrwx--x 2 boinc boinc       4096 May 21 17:15 shared
[2024-05-22 11:45:21] -rw-r--r-- 2 boinc boinc     480171 May 21 17:15 input.tar.gz
[2024-05-22 11:45:21] -rw-r--r-- 2 boinc boinc      17537 May 21 17:15 start_atlas.sh
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc          0 May 21 17:15 boinc_lockfile
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc       2852 May 21 17:15 pandaJob.out
[2024-05-22 11:45:21] -rw------- 1 boinc boinc        424 May 21 17:15 setup.sh.local
[2024-05-22 11:45:21] -rw------- 1 boinc boinc    1013238 May 21 17:15 agis_schedconf.cvmfs.json
[2024-05-22 11:45:21] -rw------- 1 boinc boinc    1324700 May 21 17:15 cric_ddmendpoints.json
[2024-05-22 11:45:21] drwx------ 4 boinc boinc       4096 May 21 17:15 pilot3
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc        532 May 22 11:26 boinc_task_state.xml
[2024-05-22 11:45:21] -rw------- 1 boinc boinc         95 May 22 11:33 pilot_heartbeat.json
[2024-05-22 11:45:21] -rw------- 1 boinc boinc 1169283541 May 22 11:33 HITS.38734053._007671.pool.root.1
[2024-05-22 11:45:21] -rw------- 1 boinc boinc       1065 May 22 11:33 memory_monitor_summary.json
[2024-05-22 11:45:21] -rw------- 1 boinc boinc          0 May 22 11:34 agis_ddmendpoints.agis.ALL.json
[2024-05-22 11:45:21] -rw------- 1 boinc boinc    1999337 May 22 11:34 log.38734053._007671.job.log.tgz.1
[2024-05-22 11:45:21] -rw------- 1 boinc boinc      27769 May 22 11:34 heartbeat.json
[2024-05-22 11:45:21] -rw------- 1 boinc boinc       4345 May 22 11:34 pilotlog.txt
[2024-05-22 11:45:21] -rw------- 1 boinc boinc   11180055 May 22 11:34 log.38734053._007671.job.log.1
[2024-05-22 11:45:21] -rw------- 1 boinc boinc        353 May 22 11:34 output.list
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc        620 May 22 11:34 runtime_log
[2024-05-22 11:45:21] -rw------- 1 boinc boinc   13219840 May 22 11:34 result.tar.gz
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc      11410 May 22 11:34 runtime_log.err
[2024-05-22 11:45:21] -rw------- 1 boinc boinc        665 May 22 11:34 HRCNDmVmFS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm7IRKDmtjy3Rn.diag
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc         28 May 22 11:44 wrapper_checkpoint.txt
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc       8192 May 22 11:45 boinc_mmap_file
[2024-05-22 11:45:21] -rw-r--r-- 1 boinc boinc      21621 May 22 11:45 stderr.txt
[2024-05-22 11:45:21] HITS file was successfully produced:
[2024-05-22 11:45:21] -rw------- 1 boinc boinc 1169283541 May 22 11:33 shared/HITS.pool.root.1
[2024-05-22 11:45:21]  *** Contents of shared directory: ***
[2024-05-22 11:45:21] total 1474536
[2024-05-22 11:45:21] -rw-r--r-- 2 boinc boinc  326905140 May 21 17:15 ATLAS.root_0
[2024-05-22 11:45:21] -rw-r--r-- 2 boinc boinc     480171 May 21 17:15 input.tar.gz
[2024-05-22 11:45:21] -rw-r--r-- 2 boinc boinc      17537 May 21 17:15 start_atlas.sh
[2024-05-22 11:45:21] -rw------- 1 boinc boinc 1169283541 May 22 11:33 HITS.pool.root.1
[2024-05-22 11:45:21] -rw------- 1 boinc boinc   13219840 May 22 11:34 result.tar.gz
11:45:23 (248641): run_atlas exited; CPU time 256162.937221
11:45:23 (248641): called boinc_finish(0)

</stderr_txt>
]]>

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