Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
16:28:29 (105885): wrapper (7.7.26015): starting
16:28:29 (105885): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 16:28:29] Arguments: --nthreads 12
[2024-05-17 16:28:29] Threads: 12
[2024-05-17 16:28:29] Checking for CVMFS
[2024-05-17 16:28:29] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 16:28:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 16:28:29] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 16:28:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 16:28:30] 2.10.1.0 61637 184134 179012 132859 2 97 37740138 45568001 14062 130560 0 1058809343 99.771 621035924 16558 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-17 16:28:30] CVMFS is ok
[2024-05-17 16:28:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 16:28:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 16:28:30] Further information can be found at the LHC@home message board.
[2024-05-17 16:28:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 16:28:30] Checking for apptainer binary...
[2024-05-17 16:28:30] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 16:28:30] Running /usr/bin/apptainer --version
[2024-05-17 16:28:30] apptainer version 1.1.8-1.el7
[2024-05-17 16:28:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 16:28:31] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0098.triumf.lcg
[2024-05-17 16:28:31] apptainer works
[2024-05-17 16:28:31] Set ATHENA_PROC_NUMBER=12
[2024-05-17 16:28:31] Set ATHENA_CORE_NUMBER=12
[2024-05-17 16:28:31] Starting ATLAS job with PandaID=6208186257
[2024-05-17 16:28:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 17:38:57]  *** The last 200 lines of the pilot log: ***
[2024-05-17 17:38:57]  domain=
[2024-05-17 17:38:57]  filesize=352798
[2024-05-17 17:38:57]  filetype=log
[2024-05-17 17:38:57]  guid=df985b7c-61b7-406f-933c-d704c9d3b61d
[2024-05-17 17:38:57]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 17:38:57]  is_tar=False
[2024-05-17 17:38:57]  lfn=log.38776104._013528.job.log.tgz.1
[2024-05-17 17:38:57]  mtime=0
[2024-05-17 17:38:57]  protocol_id=None
[2024-05-17 17:38:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 17:38:57]  replicas=None
[2024-05-17 17:38:57]  scope=mc23_13p6TeV
[2024-05-17 17:38:57]  status=None
[2024-05-17 17:38:57]  status_code=0
[2024-05-17 17:38:57]  storage_token=
[2024-05-17 17:38:57]  surl=/home/boinc/slots/0/PanDA_Pilot-6208186257/log.38776104._013528.job.log.tgz.1
[2024-05-17 17:38:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/62/log.38776104._013528.job.log.tgz.1
[2024-05-17 17:38:57]  workdir=None
[2024-05-17 17:38:57] ]
[2024-05-17 17:38:57] 2024-05-18 00:38:34,586 | INFO     | transferring file log.38776104._013528.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208186257/log.38776104._013528.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 17:38:57] 2024-05-18 00:38:34,586 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208186257/log.38776104._013528.job.log.tgz.1 /home/boinc/slots/0/log.38776104._013528.job.log.t
[2024-05-17 17:38:57] 2024-05-18 00:38:34,614 | INFO     | adding to output.list: log.38776104._013528.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/62/log.38776104._013528.job.log.tg
[2024-05-17 17:38:57] 2024-05-18 00:38:34,616 | INFO     | summary of transferred files:
[2024-05-17 17:38:57] 2024-05-18 00:38:34,616 | INFO     |  -- lfn=log.38776104._013528.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 17:38:57] 2024-05-18 00:38:34,616 | INFO     | stage-out finished correctly
[2024-05-17 17:38:57] 2024-05-18 00:38:34,687 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 17:38:57] 2024-05-18 00:38:35,522 | INFO     | monitor loop #326: job 0:6208186257 is in state 'finished'
[2024-05-17 17:38:57] 2024-05-18 00:38:35,523 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 17:38:57] 2024-05-18 00:38:36,322 | INFO     | job 6208186257 has state=finished
[2024-05-17 17:38:57] 2024-05-18 00:38:36,323 | INFO     | preparing for final server update for job 6208186257 in state='finished'
[2024-05-17 17:38:57] 2024-05-18 00:38:36,323 | INFO     | this job has now completed (state=finished)
[2024-05-17 17:38:57] 2024-05-18 00:38:36,323 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 17:38:57] 2024-05-18 00:38:36,324 | INFO     | job 6208186257 has finished - writing final server update
[2024-05-17 17:38:57] 2024-05-18 00:38:36,324 | INFO     | total number of processed events: 400 (read)
[2024-05-17 17:38:57] 2024-05-18 00:38:36,330 | INFO     | executing command: lscpu
[2024-05-17 17:38:57] 2024-05-18 00:38:36,381 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 17:38:57] 2024-05-18 00:38:36,381 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 17:38:57] 2024-05-18 00:38:36,440 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 17:38:57] 2024-05-18 00:38:38,025 | INFO     | monitor loop #327: job 0:6208186257 is in state 'finished'
[2024-05-17 17:38:57] 2024-05-18 00:38:38,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 17:38:57] 2024-05-18 00:38:40,528 | INFO     | monitor loop #328: job 0:6208186257 is in state 'finished'
[2024-05-17 17:38:57] 2024-05-18 00:38:40,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 17:38:57] 2024-05-18 00:38:41,459 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 17:38:57] 2024-05-18 00:38:41,460 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208186257/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 17:38:57] 2024-05-18 00:38:41,462 | INFO     | extracted standard info from prmon json
[2024-05-17 17:38:57] 2024-05-18 00:38:41,462 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 17:38:57] 2024-05-18 00:38:41,462 | WARNING  | GPU info not found in prmon json
[2024-05-17 17:38:57] 2024-05-18 00:38:41,462 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 17:38:57] 2024-05-18 00:38:41,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 17:38:57] 2024-05-18 00:38:41,465 | INFO     | fitting pss+swap vs Time
[2024-05-17 17:38:57] 2024-05-18 00:38:41,466 | INFO     | model: linear, x: [1715988859.0, 1715988920.0, 1715988981.0, 1715989042.0, 1715989103.0, 1715989164.0, 1715989225.0, 1715989286.0, 1715989347.0, 1715989408.0, 1715
[2024-05-17 17:38:57] 2024-05-18 00:38:41,466 | INFO     | sum of square deviations: 73882315.5
[2024-05-17 17:38:57] 2024-05-18 00:38:41,466 | INFO     | sum of deviations: 18755762110.000008
[2024-05-17 17:38:57] 2024-05-18 00:38:41,466 | INFO     | mean x: 1715990719.5
[2024-05-17 17:38:57] 2024-05-18 00:38:41,467 | INFO     | mean y: 2698559.870967742
[2024-05-17 17:38:57] 2024-05-18 00:38:41,467 | INFO     | -- intersect: -435618647361.6676
[2024-05-17 17:38:57] 2024-05-18 00:38:41,467 | INFO     | intersect: -435618647361.6676
[2024-05-17 17:38:57] 2024-05-18 00:38:41,467 | INFO     | chi2: 2.3899733234463443
[2024-05-17 17:38:57] 2024-05-18 00:38:41,467 | INFO     | -- intersect: -435618647361.6676
[2024-05-17 17:38:57] 2024-05-18 00:38:41,468 | INFO     | current memory leak: 253.86 B/s (using 62 data points, chi2=2.39)
[2024-05-17 17:38:57] 2024-05-18 00:38:41,468 | INFO     | ..............................
[2024-05-17 17:38:57] 2024-05-18 00:38:41,468 | INFO     | . Timing measurements:
[2024-05-17 17:38:57] 2024-05-18 00:38:41,468 | INFO     | . get job = 0 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | . initial setup = 2 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | . payload setup = 7 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | . stage-in = 0 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | . payload execution = 4160 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | . stage-out = 0 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | . log creation = 0 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,469 | INFO     | ..............................
[2024-05-17 17:38:57] 2024-05-18 00:38:41,538 | INFO     | 
[2024-05-17 17:38:57] 2024-05-18 00:38:41,538 | INFO     | job summary report
[2024-05-17 17:38:57] 2024-05-18 00:38:41,538 | INFO     | --------------------------------------------------
[2024-05-17 17:38:57] 2024-05-18 00:38:41,538 | INFO     | PanDA job id: 6208186257
[2024-05-17 17:38:57] 2024-05-18 00:38:41,538 | INFO     | task id: 38776104
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | errors: (none)
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | pilot state: finished 
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | transexitcode: 0
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | exeerrorcode: 0
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | exeerrordiag: 
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | exitcode: 0
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | exitmsg: OK
[2024-05-17 17:38:57] 2024-05-18 00:38:41,539 | INFO     | cpuconsumptiontime: 36498 s
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | nevents: 400
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | neventsw: 0
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | pid: 116681
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | pgrp: 116681
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | corecount: 12
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | event service: False
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | sizes: {0: 2392250, 5: 2392456, 11: 2392512, 4171: 2418502, 4173: 2427512, 4180: 2427626}
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | --------------------------------------------------
[2024-05-17 17:38:57] 2024-05-18 00:38:41,540 | INFO     | 
[2024-05-17 17:38:57] 2024-05-18 00:38:41,541 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 17:38:57] 2024-05-18 00:38:41,571 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,571 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,571 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,573 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 17:38:57] 2024-05-18 00:38:41,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,574 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 17:38:57] 2024-05-18 00:38:41,574 | INFO     | job 6208186257 has completed (purged errors)
[2024-05-17 17:38:57] 2024-05-18 00:38:41,574 | INFO     | overall cleanup function is called
[2024-05-17 17:38:57] 2024-05-18 00:38:42,584 | INFO     | --- collectZombieJob: --- 10, [116681]
[2024-05-17 17:38:57] 2024-05-18 00:38:42,584 | INFO     | zombie collector waiting for pid 116681
[2024-05-17 17:38:57] 2024-05-18 00:38:42,584 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 17:38:57] 2024-05-18 00:38:43,590 | INFO     | collected zombie processes
[2024-05-17 17:38:57] 2024-05-18 00:38:43,590 | INFO     | will now attempt to kill all subprocesses of pid=116681
[2024-05-17 17:38:57] 2024-05-18 00:38:43,768 | INFO     | process IDs to be killed: [116681] (in reverse order)
[2024-05-17 17:38:57] 2024-05-18 00:38:43,884 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 17:38:57] 2024-05-18 00:38:43,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 17:38:57] 2024-05-18 00:38:43,895 | INFO     | did not find any defunct processes belonging to 116681
[2024-05-17 17:38:57] 2024-05-18 00:38:43,903 | INFO     | did not find any defunct processes belonging to 116681
[2024-05-17 17:38:57] 2024-05-18 00:38:43,903 | INFO     | ready for new job
[2024-05-17 17:38:57] 2024-05-18 00:38:43,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 17:38:57] 2024-05-18 00:38:43,904 | INFO     | *************************************
[2024-05-17 17:38:57] 2024-05-18 00:38:43,905 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 17:38:57] 2024-05-18 00:38:43,905 | INFO     | *************************************
[2024-05-17 17:38:57] 2024-05-18 00:38:43,905 | INFO     | 
[2024-05-17 17:38:57] 2024-05-18 00:38:43,907 | INFO     | architecture information:
[2024-05-17 17:38:57] 2024-05-18 00:38:43,908 | INFO     | executing command: cat /etc/os-release
[2024-05-17 17:38:57] 2024-05-18 00:38:43,931 | INFO     | cat /etc/os-release:
[2024-05-17 17:38:57] NAME="CentOS Linux"
[2024-05-17 17:38:57] VERSION="7 (Core)"
[2024-05-17 17:38:57] ID="centos"
[2024-05-17 17:38:57] ID_LIKE="rhel fedora"
[2024-05-17 17:38:57] VERSION_ID="7"
[2024-05-17 17:38:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 17:38:57] ANSI_COLOR="0;31"
[2024-05-17 17:38:57] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 17:38:57] HOME_URL="https://www.centos.org/"
[2024-05-17 17:38:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 17:38:57] 
[2024-05-17 17:38:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 17:38:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 17:38:57] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 17:38:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 17:38:57] 
[2024-05-17 17:38:57] 2024-05-18 00:38:43,932 | INFO     | *************************************
[2024-05-17 17:38:57] 2024-05-18 00:38:44,435 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 17:38:57] 2024-05-18 00:38:44,462 | INFO     | sufficient remaining disk space (2173235625984 B)
[2024-05-17 17:38:57] 2024-05-18 00:38:44,463 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 17:38:57] 2024-05-18 00:38:44,463 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 17:38:57] 2024-05-18 00:38:44,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 17:38:57] 2024-05-18 00:38:44,464 | INFO     | aborting loop
[2024-05-17 17:38:57] 2024-05-18 00:38:44,901 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 17:38:57] 2024-05-18 00:38:44,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 17:38:57] 2024-05-18 00:38:44,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 17:38:57] 2024-05-18 00:38:45,037 | INFO     | all data control threads have been joined
[2024-05-17 17:38:57] 2024-05-18 00:38:45,197 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 17:38:57] 2024-05-18 00:38:45,271 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 17:38:57] 2024-05-18 00:38:45,273 | INFO     | all job control threads have been joined
[2024-05-17 17:38:57] 2024-05-18 00:38:45,467 | INFO     | [job] retrieve thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:45,469 | INFO     | [job] job monitor thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:45,544 | INFO     | all payload control threads have been joined
[2024-05-17 17:38:57] 2024-05-18 00:38:45,608 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:45,651 | INFO     | [payload] failed_post thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:45,679 | INFO     | [data] copytool_in thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:45,778 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:45,947 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:46,042 | INFO     | [data] control thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:46,278 | INFO     | [job] control thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:46,280 | INFO     | [job] validate thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:46,549 | INFO     | [payload] control thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:46,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 17:38:57] 2024-05-18 00:38:46,641 | INFO     | [payload] validate_post thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:46,690 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:47,203 | INFO     | [data] copytool_out thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:47,555 | INFO     | [job] queue monitor thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:49,276 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 17:38:57] 2024-05-18 00:38:51,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409230870336)>', '<ExcThread(monitor, started 140408940107520)>']
[2024-05-17 17:38:57] 2024-05-18 00:38:51,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 17:38:57] 2024-05-18 00:38:51,938 | INFO     | [monitor] control thread has ended
[2024-05-17 17:38:57] 2024-05-18 00:38:56,068 | INFO     | all workflow threads have been joined
[2024-05-17 17:38:57] 2024-05-18 00:38:56,069 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 17:38:57] 2024-05-18 00:38:56,069 | INFO     | traces error code: 0
[2024-05-17 17:38:57] 2024-05-18 00:38:56,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 17:38:57] 2024-05-18 00:38:56,148 [wrapper] ==== pilot stdout END ====
[2024-05-17 17:38:57] 2024-05-18 00:38:56,151 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 17:38:57] 2024-05-18 00:38:56,155 [wrapper] pilotpid: 110131
[2024-05-17 17:38:57] 2024-05-18 00:38:56,157 [wrapper] Pilot exit status: 0
[2024-05-17 17:38:57] 2024-05-18 00:38:56,168 [wrapper] pandaids: 6208186257
[2024-05-17 17:38:57] 2024-05-18 00:38:56,246 [wrapper] cleanup: SIGTERM to supervisor_pilot  89541 110132
[2024-05-17 17:38:57] 2024-05-18 00:38:56,250 [wrapper] Test setup, not cleaning
[2024-05-17 17:38:57] 2024-05-18 00:38:56,255 [wrapper] ==== wrapper stdout END ====
[2024-05-17 17:38:57] 2024-05-18 00:38:56,260 [wrapper] ==== wrapper stderr END ====
[2024-05-17 17:38:57] 2024-05-18 00:38:56,266 [wrapper] apfmon messages muted
[2024-05-17 17:38:57]  *** Error codes and diagnostics ***
[2024-05-17 17:38:57]     "exeErrorCode": 0,
[2024-05-17 17:38:57]     "exeErrorDiag": "",
[2024-05-17 17:38:57]     "pilotErrorCode": 0,
[2024-05-17 17:38:57]     "pilotErrorDiag": "",
[2024-05-17 17:38:57]  *** Listing of results directory ***
[2024-05-17 17:38:57] total 820544
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc    467845 May 17 09:26 pilot3.tar.gz
[2024-05-17 17:38:57] -rwx------ 1 boinc boinc     32251 May 17 09:35 runpilot2-wrapper.sh
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc      5633 May 17 09:35 queuedata.json
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc       100 May 17 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 17:38:57] -rwxr-xr-x 1 boinc boinc      7986 May 17 16:28 run_atlas
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc       105 May 17 16:28 job.xml
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc      6621 May 17 16:28 init_data.xml
[2024-05-17 17:38:57] -rw-r--r-- 2 boinc boinc 601469465 May 17 16:28 EVNT.38776100._000168.pool.root.1
[2024-05-17 17:38:57] -rw-r--r-- 2 boinc boinc     17537 May 17 16:28 start_atlas.sh
[2024-05-17 17:38:57] drwxrwx--x 2 boinc boinc      4096 May 17 16:28 shared
[2024-05-17 17:38:57] -rw-r--r-- 2 boinc boinc    480002 May 17 16:28 input.tar.gz
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc         0 May 17 16:28 boinc_lockfile
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc      2642 May 17 16:28 pandaJob.out
[2024-05-17 17:38:57] -rw------- 1 boinc boinc       424 May 17 16:28 setup.sh.local
[2024-05-17 17:38:57] -rw------- 1 boinc boinc   1019081 May 17 16:28 agis_schedconf.cvmfs.json
[2024-05-17 17:38:57] -rw------- 1 boinc boinc         0 May 17 16:28 agis_ddmendpoints.agis.ALL.json
[2024-05-17 17:38:57] -rw------- 1 boinc boinc   1324701 May 17 16:28 cric_ddmendpoints.json
[2024-05-17 17:38:57] drwx------ 4 boinc boinc      4096 May 17 16:28 pilot3
[2024-05-17 17:38:57] -rw------- 1 boinc boinc 233690730 May 17 17:37 HITS.38776104._013528.pool.root.1
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc       530 May 17 17:37 boinc_task_state.xml
[2024-05-17 17:38:57] -rw------- 1 boinc boinc        95 May 17 17:37 pilot_heartbeat.json
[2024-05-17 17:38:57] -rw------- 1 boinc boinc      1059 May 17 17:38 memory_monitor_summary.json
[2024-05-17 17:38:57] -rw------- 1 boinc boinc    352798 May 17 17:38 log.38776104._013528.job.log.tgz.1
[2024-05-17 17:38:57] -rw------- 1 boinc boinc      7773 May 17 17:38 heartbeat.json
[2024-05-17 17:38:57] -rw------- 1 boinc boinc      4210 May 17 17:38 pilotlog.txt
[2024-05-17 17:38:57] -rw------- 1 boinc boinc    416553 May 17 17:38 log.38776104._013528.job.log.1
[2024-05-17 17:38:57] -rw------- 1 boinc boinc       357 May 17 17:38 output.list
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc       620 May 17 17:38 runtime_log
[2024-05-17 17:38:57] -rw------- 1 boinc boinc    788480 May 17 17:38 result.tar.gz
[2024-05-17 17:38:57] -rw------- 1 boinc boinc       654 May 17 17:38 zzbKDmzjFS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmsIRKDm9qOkEm.diag
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc     11286 May 17 17:38 runtime_log.err
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc      8192 May 17 17:38 boinc_mmap_file
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc        27 May 17 17:38 wrapper_checkpoint.txt
[2024-05-17 17:38:57] -rw-r--r-- 1 boinc boinc     21534 May 17 17:38 stderr.txt
[2024-05-17 17:38:57] HITS file was successfully produced:
[2024-05-17 17:38:57] -rw------- 1 boinc boinc 233690730 May 17 17:37 shared/HITS.pool.root.1
[2024-05-17 17:38:57]  *** Contents of shared directory: ***
[2024-05-17 17:38:57] total 816864
[2024-05-17 17:38:57] -rw-r--r-- 2 boinc boinc 601469465 May 17 16:28 ATLAS.root_0
[2024-05-17 17:38:57] -rw-r--r-- 2 boinc boinc     17537 May 17 16:28 start_atlas.sh
[2024-05-17 17:38:57] -rw-r--r-- 2 boinc boinc    480002 May 17 16:28 input.tar.gz
[2024-05-17 17:38:57] -rw------- 1 boinc boinc 233690730 May 17 17:37 HITS.pool.root.1
[2024-05-17 17:38:57] -rw------- 1 boinc boinc    788480 May 17 17:38 result.tar.gz
17:38:59 (105885): run_atlas exited; CPU time 36130.720864
17:38:59 (105885): called boinc_finish(0)

</stderr_txt>
]]>

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