Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
18:27:00 (99841): wrapper (7.7.26015): starting
18:27:00 (99841): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 18:27:00] Arguments: --nthreads 12
[2024-05-17 18:27:00] Threads: 12
[2024-05-17 18:27:00] Checking for CVMFS
[2024-05-17 18:27:01] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 18:27:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 18:27:01] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 18:27:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 18:27:01] 2.10.1.0 2815 172998 130260 132861 2 137 31668123 45568001 13816 130560 0 1003929609 99.768 615042292 19906 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 18:27:01] CVMFS is ok
[2024-05-17 18:27:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 18:27:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 18:27:01] Further information can be found at the LHC@home message board.
[2024-05-17 18:27:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 18:27:01] Checking for apptainer binary...
[2024-05-17 18:27:01] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 18:27:01] Running /usr/bin/apptainer --version
[2024-05-17 18:27:01] apptainer version 1.1.8-1.el7
[2024-05-17 18:27:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 18:27:03] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0119.triumf.lcg
[2024-05-17 18:27:03] apptainer works
[2024-05-17 18:27:03] Set ATHENA_PROC_NUMBER=12
[2024-05-17 18:27:03] Set ATHENA_CORE_NUMBER=12
[2024-05-17 18:27:03] Starting ATLAS job with PandaID=6208166881
[2024-05-17 18:27:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 19:42:08]  *** The last 200 lines of the pilot log: ***
[2024-05-17 19:42:08]  domain=
[2024-05-17 19:42:08]  filesize=372756
[2024-05-17 19:42:08]  filetype=log
[2024-05-17 19:42:08]  guid=63c2d741-11d3-4baf-beda-d5f97f51d96c
[2024-05-17 19:42:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 19:42:08]  is_tar=False
[2024-05-17 19:42:08]  lfn=log.38776125._014884.job.log.tgz.1
[2024-05-17 19:42:08]  mtime=0
[2024-05-17 19:42:08]  protocol_id=None
[2024-05-17 19:42:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 19:42:08]  replicas=None
[2024-05-17 19:42:08]  scope=mc23_13p6TeV
[2024-05-17 19:42:08]  status=None
[2024-05-17 19:42:08]  status_code=0
[2024-05-17 19:42:08]  storage_token=
[2024-05-17 19:42:08]  surl=/home/boinc/slots/0/PanDA_Pilot-6208166881/log.38776125._014884.job.log.tgz.1
[2024-05-17 19:42:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/69/log.38776125._014884.job.log.tgz.1
[2024-05-17 19:42:08]  workdir=None
[2024-05-17 19:42:08] ]
[2024-05-17 19:42:08] 2024-05-18 02:41:43,313 | INFO     | transferring file log.38776125._014884.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208166881/log.38776125._014884.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 19:42:08] 2024-05-18 02:41:43,313 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208166881/log.38776125._014884.job.log.tgz.1 /home/boinc/slots/0/log.38776125._014884.job.log.t
[2024-05-17 19:42:08] 2024-05-18 02:41:43,337 | INFO     | adding to output.list: log.38776125._014884.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/69/log.38776125._014884.job.log.tg
[2024-05-17 19:42:08] 2024-05-18 02:41:43,339 | INFO     | summary of transferred files:
[2024-05-17 19:42:08] 2024-05-18 02:41:43,339 | INFO     |  -- lfn=log.38776125._014884.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 19:42:08] 2024-05-18 02:41:43,340 | INFO     | stage-out finished correctly
[2024-05-17 19:42:08] 2024-05-18 02:41:43,539 | INFO     | monitor loop #350: job 0:6208166881 is in state 'finished'
[2024-05-17 19:42:08] 2024-05-18 02:41:43,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 19:42:08] 2024-05-18 02:41:45,757 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 19:42:08] 2024-05-18 02:41:45,824 | INFO     | job 6208166881 has state=finished
[2024-05-17 19:42:08] 2024-05-18 02:41:45,824 | INFO     | preparing for final server update for job 6208166881 in state='finished'
[2024-05-17 19:42:08] 2024-05-18 02:41:45,825 | INFO     | this job has now completed (state=finished)
[2024-05-17 19:42:08] 2024-05-18 02:41:45,825 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 19:42:08] 2024-05-18 02:41:45,825 | INFO     | job 6208166881 has finished - writing final server update
[2024-05-17 19:42:08] 2024-05-18 02:41:45,825 | INFO     | total number of processed events: 400 (read)
[2024-05-17 19:42:08] 2024-05-18 02:41:45,831 | INFO     | executing command: lscpu
[2024-05-17 19:42:08] 2024-05-18 02:41:45,886 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 19:42:08] 2024-05-18 02:41:45,886 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 19:42:08] 2024-05-18 02:41:45,944 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 19:42:08] 2024-05-18 02:41:46,042 | INFO     | monitor loop #351: job 0:6208166881 is in state 'finished'
[2024-05-17 19:42:08] 2024-05-18 02:41:46,043 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 19:42:08] 2024-05-18 02:41:48,546 | INFO     | monitor loop #352: job 0:6208166881 is in state 'finished'
[2024-05-17 19:42:08] 2024-05-18 02:41:48,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 19:42:08] 2024-05-18 02:41:50,927 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 19:42:08] 2024-05-18 02:41:50,928 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208166881/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 19:42:08] 2024-05-18 02:41:50,929 | INFO     | extracted standard info from prmon json
[2024-05-17 19:42:08] 2024-05-18 02:41:50,929 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 19:42:08] 2024-05-18 02:41:50,929 | WARNING  | GPU info not found in prmon json
[2024-05-17 19:42:08] 2024-05-18 02:41:50,929 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 19:42:08] 2024-05-18 02:41:50,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 19:42:08] 2024-05-18 02:41:50,931 | INFO     | fitting pss+swap vs Time
[2024-05-17 19:42:08] 2024-05-18 02:41:50,931 | INFO     | model: linear, x: [1715995970.0, 1715996031.0, 1715996092.0, 1715996153.0, 1715996214.0, 1715996275.0, 1715996336.0, 1715996397.0, 1715996458.0, 1715996519.0, 1715
[2024-05-17 19:42:08] 2024-05-18 02:41:50,931 | INFO     | sum of square deviations: 89127252.5
[2024-05-17 19:42:08] 2024-05-18 02:41:50,931 | INFO     | sum of deviations: 18733869789.5
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | mean x: 1715997952.5
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | mean y: 2662269.1666666665
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | -- intersect: -360687040369.02026
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | intersect: -360687040369.02026
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | chi2: 2.628047907203931
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | -- intersect: -360687040369.02026
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | current memory leak: 210.19 B/s (using 66 data points, chi2=2.63)
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | ..............................
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | . Timing measurements:
[2024-05-17 19:42:08] 2024-05-18 02:41:50,932 | INFO     | . get job = 0 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | . initial setup = 2 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | . payload setup = 7 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | . stage-in = 0 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | . payload execution = 4438 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | . stage-out = 0 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | . log creation = 0 s
[2024-05-17 19:42:08] 2024-05-18 02:41:50,933 | INFO     | ..............................
[2024-05-17 19:42:08] 2024-05-18 02:41:51,065 | INFO     | 
[2024-05-17 19:42:08] 2024-05-18 02:41:51,065 | INFO     | job summary report
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | --------------------------------------------------
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | PanDA job id: 6208166881
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | task id: 38776125
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | errors: (none)
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | pilot state: finished 
[2024-05-17 19:42:08] 2024-05-18 02:41:51,066 | INFO     | transexitcode: 0
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | exeerrorcode: 0
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | exeerrordiag: 
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | exitcode: 0
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | exitmsg: OK
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | cpuconsumptiontime: 41238 s
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | nevents: 400
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | neventsw: 0
[2024-05-17 19:42:08] 2024-05-18 02:41:51,067 | INFO     | pid: 121540
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | pgrp: 121540
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | corecount: 12
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | event service: False
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | sizes: {0: 2392071, 1: 2392270, 6: 2392476, 11: 2392504, 4449: 2418578, 4451: 2427532, 4453: 2427716, 4458: 2427886}
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | --------------------------------------------------
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | 
[2024-05-17 19:42:08] 2024-05-18 02:41:51,068 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 19:42:08] 2024-05-18 02:41:51,095 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,096 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,096 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,096 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,098 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 19:42:08] 2024-05-18 02:41:51,099 | INFO     | job 6208166881 has completed (purged errors)
[2024-05-17 19:42:08] 2024-05-18 02:41:51,099 | INFO     | overall cleanup function is called
[2024-05-17 19:42:08] 2024-05-18 02:41:52,109 | INFO     | --- collectZombieJob: --- 10, [121540]
[2024-05-17 19:42:08] 2024-05-18 02:41:52,109 | INFO     | zombie collector waiting for pid 121540
[2024-05-17 19:42:08] 2024-05-18 02:41:52,109 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 19:42:08] 2024-05-18 02:41:53,111 | INFO     | collected zombie processes
[2024-05-17 19:42:08] 2024-05-18 02:41:53,111 | INFO     | will now attempt to kill all subprocesses of pid=121540
[2024-05-17 19:42:08] 2024-05-18 02:41:53,284 | INFO     | process IDs to be killed: [121540] (in reverse order)
[2024-05-17 19:42:08] 2024-05-18 02:41:53,413 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 19:42:08] 2024-05-18 02:41:53,413 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 19:42:08] 2024-05-18 02:41:53,425 | INFO     | did not find any defunct processes belonging to 121540
[2024-05-17 19:42:08] 2024-05-18 02:41:53,432 | INFO     | did not find any defunct processes belonging to 121540
[2024-05-17 19:42:08] 2024-05-18 02:41:53,432 | INFO     | ready for new job
[2024-05-17 19:42:08] 2024-05-18 02:41:53,433 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 19:42:08] 2024-05-18 02:41:53,434 | INFO     | *************************************
[2024-05-17 19:42:08] 2024-05-18 02:41:53,434 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 19:42:08] 2024-05-18 02:41:53,434 | INFO     | *************************************
[2024-05-17 19:42:08] 2024-05-18 02:41:53,434 | INFO     | 
[2024-05-17 19:42:08] 2024-05-18 02:41:53,437 | INFO     | architecture information:
[2024-05-17 19:42:08] 2024-05-18 02:41:53,437 | INFO     | executing command: cat /etc/os-release
[2024-05-17 19:42:08] 2024-05-18 02:41:53,458 | INFO     | cat /etc/os-release:
[2024-05-17 19:42:08] NAME="CentOS Linux"
[2024-05-17 19:42:08] VERSION="7 (Core)"
[2024-05-17 19:42:08] ID="centos"
[2024-05-17 19:42:08] ID_LIKE="rhel fedora"
[2024-05-17 19:42:08] VERSION_ID="7"
[2024-05-17 19:42:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 19:42:08] ANSI_COLOR="0;31"
[2024-05-17 19:42:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 19:42:08] HOME_URL="https://www.centos.org/"
[2024-05-17 19:42:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 19:42:08] 
[2024-05-17 19:42:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 19:42:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 19:42:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 19:42:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 19:42:08] 
[2024-05-17 19:42:08] 2024-05-18 02:41:53,459 | INFO     | *************************************
[2024-05-17 19:42:08] 2024-05-18 02:41:53,962 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 19:42:08] 2024-05-18 02:41:53,986 | INFO     | sufficient remaining disk space (1949275521024 B)
[2024-05-17 19:42:08] 2024-05-18 02:41:53,987 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 19:42:08] 2024-05-18 02:41:53,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 19:42:08] 2024-05-18 02:41:53,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 19:42:08] 2024-05-18 02:41:54,177 | INFO     | all data control threads have been joined
[2024-05-17 19:42:08] 2024-05-18 02:41:54,261 | INFO     | all payload control threads have been joined
[2024-05-17 19:42:08] 2024-05-18 02:41:54,289 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 19:42:08] 2024-05-18 02:41:54,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 19:42:08] 2024-05-18 02:41:54,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 19:42:08] 2024-05-18 02:41:54,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 19:42:08] 2024-05-18 02:41:54,556 | INFO     | aborting loop
[2024-05-17 19:42:08] 2024-05-18 02:41:54,972 | INFO     | all job control threads have been joined
[2024-05-17 19:42:08] 2024-05-18 02:41:54,992 | INFO     | [job] retrieve thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,000 | INFO     | [data] copytool_in thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,182 | INFO     | [data] control thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,191 | INFO     | [job] validate thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,266 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,267 | INFO     | [payload] control thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,327 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,412 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,561 | INFO     | [job] job monitor thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,636 | INFO     | [payload] validate_post thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,977 | INFO     | [job] control thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:55,992 | INFO     | [data] copytool_out thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:56,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 19:42:08] 2024-05-18 02:41:56,133 | INFO     | [payload] failed_post thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:56,259 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:41:56,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 19:42:08] 2024-05-18 02:41:57,019 | INFO     | [job] queue monitor thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:42:00,337 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 19:42:08] 2024-05-18 02:42:01,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140014056601408)>', '<ExcThread(monitor, started 140013501142784)>']
[2024-05-17 19:42:08] 2024-05-18 02:42:02,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 19:42:08] 2024-05-18 02:42:02,326 | INFO     | [monitor] control thread has ended
[2024-05-17 19:42:08] 2024-05-18 02:42:06,945 | INFO     | all workflow threads have been joined
[2024-05-17 19:42:08] 2024-05-18 02:42:06,946 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 19:42:08] 2024-05-18 02:42:06,946 | INFO     | traces error code: 0
[2024-05-17 19:42:08] 2024-05-18 02:42:06,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 19:42:08] 2024-05-18 02:42:07,044 [wrapper] ==== pilot stdout END ====
[2024-05-17 19:42:08] 2024-05-18 02:42:07,049 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 19:42:08] 2024-05-18 02:42:07,052 [wrapper] pilotpid: 108803
[2024-05-17 19:42:08] 2024-05-18 02:42:07,055 [wrapper] Pilot exit status: 0
[2024-05-17 19:42:08] 2024-05-18 02:42:07,066 [wrapper] pandaids: 6208166881
[2024-05-17 19:42:08] 2024-05-18 02:42:07,148 [wrapper] cleanup: SIGTERM to supervisor_pilot 195373 108805
[2024-05-17 19:42:08] 2024-05-18 02:42:07,153 [wrapper] Test setup, not cleaning
[2024-05-17 19:42:08] 2024-05-18 02:42:07,157 [wrapper] ==== wrapper stdout END ====
[2024-05-17 19:42:08] 2024-05-18 02:42:07,162 [wrapper] ==== wrapper stderr END ====
[2024-05-17 19:42:08] 2024-05-18 02:42:07,171 [wrapper] apfmon messages muted
[2024-05-17 19:42:08]  *** Error codes and diagnostics ***
[2024-05-17 19:42:08]     "exeErrorCode": 0,
[2024-05-17 19:42:08]     "exeErrorDiag": "",
[2024-05-17 19:42:08]     "pilotErrorCode": 0,
[2024-05-17 19:42:08]     "pilotErrorDiag": "",
[2024-05-17 19:42:08]  *** Listing of results directory ***
[2024-05-17 19:42:08] total 836920
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc    467845 May 17 09:05 pilot3.tar.gz
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc      5633 May 17 09:17 queuedata.json
[2024-05-17 19:42:08] -rwx------ 1 boinc boinc     32251 May 17 09:18 runpilot2-wrapper.sh
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc       100 May 17 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 19:42:08] -rwxr-xr-x 1 boinc boinc      7986 May 17 18:26 run_atlas
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc       105 May 17 18:26 job.xml
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc      6622 May 17 18:27 init_data.xml
[2024-05-17 19:42:08] -rw-r--r-- 2 boinc boinc 604968521 May 17 18:27 EVNT.38776119._000226.pool.root.1
[2024-05-17 19:42:08] drwxrwx--x 2 boinc boinc      4096 May 17 18:27 shared
[2024-05-17 19:42:08] -rw-r--r-- 2 boinc boinc    480012 May 17 18:27 input.tar.gz
[2024-05-17 19:42:08] -rw-r--r-- 2 boinc boinc     17537 May 17 18:27 start_atlas.sh
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc         0 May 17 18:27 boinc_lockfile
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc      2634 May 17 18:27 pandaJob.out
[2024-05-17 19:42:08] -rw------- 1 boinc boinc       424 May 17 18:27 setup.sh.local
[2024-05-17 19:42:08] -rw------- 1 boinc boinc   1019073 May 17 18:27 agis_schedconf.cvmfs.json
[2024-05-17 19:42:08] -rw------- 1 boinc boinc         0 May 17 18:27 agis_ddmendpoints.agis.ALL.json
[2024-05-17 19:42:08] -rw------- 1 boinc boinc   1324701 May 17 18:27 cric_ddmendpoints.json
[2024-05-17 19:42:08] drwx------ 4 boinc boinc      4096 May 17 18:27 pilot3
[2024-05-17 19:42:08] -rw------- 1 boinc boinc 246865659 May 17 19:40 HITS.38776125._014884.pool.root.1
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc       530 May 17 19:41 boinc_task_state.xml
[2024-05-17 19:42:08] -rw------- 1 boinc boinc        95 May 17 19:41 pilot_heartbeat.json
[2024-05-17 19:42:08] -rw------- 1 boinc boinc      1062 May 17 19:41 memory_monitor_summary.json
[2024-05-17 19:42:08] -rw------- 1 boinc boinc    372756 May 17 19:41 log.38776125._014884.job.log.tgz.1
[2024-05-17 19:42:08] -rw------- 1 boinc boinc      7779 May 17 19:41 heartbeat.json
[2024-05-17 19:42:08] -rw------- 1 boinc boinc      4210 May 17 19:42 pilotlog.txt
[2024-05-17 19:42:08] -rw------- 1 boinc boinc    444998 May 17 19:42 log.38776125._014884.job.log.1
[2024-05-17 19:42:08] -rw------- 1 boinc boinc       357 May 17 19:42 output.list
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc       620 May 17 19:42 runtime_log
[2024-05-17 19:42:08] -rw------- 1 boinc boinc    839680 May 17 19:42 result.tar.gz
[2024-05-17 19:42:08] -rw------- 1 boinc boinc       652 May 17 19:42 sUMKDm9SFS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmMHRKDm0nhSSo.diag
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc     11286 May 17 19:42 runtime_log.err
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc        27 May 17 19:42 wrapper_checkpoint.txt
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc      8192 May 17 19:42 boinc_mmap_file
[2024-05-17 19:42:08] -rw-r--r-- 1 boinc boinc     21557 May 17 19:42 stderr.txt
[2024-05-17 19:42:08] HITS file was successfully produced:
[2024-05-17 19:42:08] -rw------- 1 boinc boinc 246865659 May 17 19:40 shared/HITS.pool.root.1
[2024-05-17 19:42:08]  *** Contents of shared directory: ***
[2024-05-17 19:42:08] total 833192
[2024-05-17 19:42:08] -rw-r--r-- 2 boinc boinc 604968521 May 17 18:27 ATLAS.root_0
[2024-05-17 19:42:08] -rw-r--r-- 2 boinc boinc    480012 May 17 18:27 input.tar.gz
[2024-05-17 19:42:08] -rw-r--r-- 2 boinc boinc     17537 May 17 18:27 start_atlas.sh
[2024-05-17 19:42:08] -rw------- 1 boinc boinc 246865659 May 17 19:40 HITS.pool.root.1
[2024-05-17 19:42:08] -rw------- 1 boinc boinc    839680 May 17 19:42 result.tar.gz
19:42:09 (99841): run_atlas exited; CPU time 40955.151224
19:42:09 (99841): called boinc_finish(0)

</stderr_txt>
]]>

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