Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:11 (504342): wrapper (7.7.26015): starting
05:42:11 (504342): wrapper: running run_atlas (--nthreads 4)
[2024-05-21 05:42:11] Arguments: --nthreads 4
[2024-05-21 05:42:11] Threads: 4
[2024-05-21 05:42:11] Checking for CVMFS
[2024-05-21 05:42:11] No cvmfs_config command found, will try listing directly
[2024-05-21 05:42:11] CVMFS is ok
[2024-05-21 05:42:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-21 05:42:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-21 05:42:11] Further information can be found at the LHC@home message board.
[2024-05-21 05:42:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-21 05:42:11] Checking for apptainer binary...
[2024-05-21 05:42:11] which: no apptainer in ((null))
[2024-05-21 05:42:11] apptainer is not installed, using version from CVMFS
[2024-05-21 05:42:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-21 05:42:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2024-05-21 05:42:12] apptainer works
[2024-05-21 05:42:12] Set ATHENA_PROC_NUMBER=4
[2024-05-21 05:42:12] Set ATHENA_CORE_NUMBER=4
[2024-05-21 05:42:12] Starting ATLAS job with PandaID=6208140776
[2024-05-21 05:42:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-21 07:55:32]  *** The last 200 lines of the pilot log: ***
[2024-05-21 07:55:32] 2024-05-21 05:53:22,600 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-21 07:55:32] 2024-05-21 05:53:22,600 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-21 07:55:32] 2024-05-21 05:53:22,602 | INFO     | fitting pss+swap vs Time
[2024-05-21 07:55:32] 2024-05-21 05:53:22,602 | INFO     | model: linear, x: [1716262962.0, 1716263023.0, 1716263084.0, 1716263145.0, 1716263206.0, 1716263267.0, 1716263328.0, 1716263389.0, 1716263450.0, 1716263511.0, 1716
[2024-05-21 07:55:32] 2024-05-21 05:53:22,602 | INFO     | sum of square deviations: 665612480.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | sum of deviations: 38013805417.99997
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | mean x: 1716266866.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | mean y: 2236216.108527132
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | -- intersect: -98015509318.77783
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | intersect: -98015509318.77783
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | chi2: 4.762166026458014
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | model: linear, x: [1716262962.0, 1716263023.0, 1716263084.0, 1716263145.0, 1716263206.0, 1716263267.0, 1716263328.0, 1716263389.0, 1716263450.0, 1716263511.0, 1716
[2024-05-21 07:55:32] 2024-05-21 05:53:22,603 | INFO     | sum of square deviations: 591173875.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | sum of deviations: 44425066915.49999
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | mean x: 1716266713.5
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | mean y: 2248824.040322581
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | -- intersect: -128970405104.69215
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | intersect: -128970405104.69215
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | chi2: 3.9740588336419034
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | current chi2=3.9740588336419034 (change=16.549343060226864 %)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | right removable region: 123
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | model: linear, x: [1716263267.0, 1716263328.0, 1716263389.0, 1716263450.0, 1716263511.0, 1716263572.0, 1716263633.0, 1716263694.0, 1716263755.0, 1716263816.0, 1716
[2024-05-21 07:55:32] 2024-05-21 05:53:22,604 | INFO     | sum of square deviations: 591173875.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | sum of deviations: 9771740365.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | mean x: 1716267018.5
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | mean y: 2293804.0483870967
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | -- intersect: -28366543878.08811
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | intersect: -28366543878.08811
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | chi2: 2.3138738232093
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | current chi2=2.3138738232093 (change=51.41131555780082 %)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | model: linear, x: [1716263572.0, 1716263633.0, 1716263694.0, 1716263755.0, 1716263816.0, 1716263877.0, 1716263938.0, 1716263999.0, 1716264060.0, 1716264121.0, 1716
[2024-05-21 07:55:32] 2024-05-21 05:53:22,605 | INFO     | sum of square deviations: 522502820.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | sum of deviations: -12413783650.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | mean x: 1716267171.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | mean y: 2343090.277310924
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | -- intersect: 40777949519.33267
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | intersect: 40777949519.33267
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | chi2: 0.9166345532577622
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | current chi2=0.9166345532577622 (change=60.38528358532501 %)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | model: linear, x: [1716263877.0, 1716263938.0, 1716263999.0, 1716264060.0, 1716264121.0, 1716264182.0, 1716264243.0, 1716264304.0, 1716264365.0, 1716264426.0, 1716
[2024-05-21 07:55:32] 2024-05-21 05:53:22,606 | INFO     | sum of square deviations: 459366752.5
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | sum of deviations: -13350392564.5
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | mean x: 1716267323.5
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | mean y: 2345181.552631579
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | -- intersect: 49881537329.54928
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | intersect: 49881537329.54928
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | chi2: 0.8776787316179677
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | current chi2=0.8776787316179677 (change=4.249874882126544 %)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | left removable region: 30
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | model: linear, x: [1716264792.0, 1716264853.0, 1716264914.0, 1716264975.0, 1716265036.0, 1716265097.0, 1716265158.0, 1716265219.0, 1716265280.0, 1716265341.0, 1716
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | sum of square deviations: 249388862.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,607 | INFO     | sum of deviations: -385224150.00000024
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | mean x: 1716267598.0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | mean y: 2347149.5483870967
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | -- intersect: 2653418738.351307
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | intersect: 2653418738.351307
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | chi2: 0.010505917036817879
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | -- intersect: 2653418738.351307
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | current memory leak: -1.54 B/s (using 93 data points, chi2=0.01)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | ..............................
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | . Timing measurements:
[2024-05-21 07:55:32] 2024-05-21 05:53:22,608 | INFO     | . get job = 0 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | . initial setup = 1 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | . payload setup = 4 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | . stage-in = 0 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | . payload execution = 7832 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | . stage-out = 0 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | . log creation = 0 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,609 | INFO     | ..............................
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | 
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | job summary report
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | --------------------------------------------------
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | PanDA job id: 6208140776
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | task id: 38776104
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | errors: (none)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,666 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | pilot state: finished 
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | transexitcode: 0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | exeerrorcode: 0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | exeerrordiag: 
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | exitcode: 0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | exitmsg: OK
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | cpuconsumptiontime: 28663 s
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | nevents: 400
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | neventsw: 0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | pid: 515677
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | pgrp: 515677
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | corecount: 4
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | event service: False
[2024-05-21 07:55:32] 2024-05-21 05:53:22,667 | INFO     | sizes: {0: 2392041, 1: 2392240, 4: 2392446, 11: 2392474, 7840: 2420140, 7841: 2429122, 7842: 2429306, 7848: 2429476}
[2024-05-21 07:55:32] 2024-05-21 05:53:22,668 | INFO     | --------------------------------------------------
[2024-05-21 07:55:32] 2024-05-21 05:53:22,668 | INFO     | 
[2024-05-21 07:55:32] 2024-05-21 05:53:22,668 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2024-05-21 07:55:32] 2024-05-21 05:53:22,692 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,692 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,692 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,692 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,694 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,694 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-21 07:55:32] 2024-05-21 05:53:22,694 | INFO     | job 6208140776 has completed (purged errors)
[2024-05-21 07:55:32] 2024-05-21 05:53:22,694 | INFO     | overall cleanup function is called
[2024-05-21 07:55:32] 2024-05-21 05:53:23,697 | INFO     | --- collectZombieJob: --- 10, [515677]
[2024-05-21 07:55:32] 2024-05-21 05:53:23,698 | INFO     | zombie collector waiting for pid 515677
[2024-05-21 07:55:32] 2024-05-21 05:53:23,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-21 07:55:32] 2024-05-21 05:53:24,702 | INFO     | collected zombie processes
[2024-05-21 07:55:32] 2024-05-21 05:53:24,703 | INFO     | will now attempt to kill all subprocesses of pid=515677
[2024-05-21 07:55:32] 2024-05-21 05:53:24,898 | INFO     | process IDs to be killed: [515677] (in reverse order)
[2024-05-21 07:55:32] 2024-05-21 05:53:25,012 | WARNING  | found no corresponding commands to process id(s)
[2024-05-21 07:55:32] 2024-05-21 05:53:25,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-21 07:55:32] 2024-05-21 05:53:25,024 | INFO     | did not find any defunct processes belonging to 515677
[2024-05-21 07:55:32] 2024-05-21 05:53:25,035 | INFO     | did not find any defunct processes belonging to 515677
[2024-05-21 07:55:32] 2024-05-21 05:53:25,036 | INFO     | ready for new job
[2024-05-21 07:55:32] 2024-05-21 05:53:25,036 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-21 07:55:32] 2024-05-21 05:53:25,037 | INFO     | *************************************
[2024-05-21 07:55:32] 2024-05-21 05:53:25,038 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-21 07:55:32] 2024-05-21 05:53:25,038 | INFO     | *************************************
[2024-05-21 07:55:32] 2024-05-21 05:53:25,038 | INFO     | 
[2024-05-21 07:55:32] 2024-05-21 05:53:25,042 | INFO     | architecture information:
[2024-05-21 07:55:32] 2024-05-21 05:53:25,042 | INFO     | executing command: cat /etc/os-release
[2024-05-21 07:55:32] 2024-05-21 05:53:25,062 | INFO     | cat /etc/os-release:
[2024-05-21 07:55:32] NAME="CentOS Linux"
[2024-05-21 07:55:32] VERSION="7 (Core)"
[2024-05-21 07:55:32] ID="centos"
[2024-05-21 07:55:32] ID_LIKE="rhel fedora"
[2024-05-21 07:55:32] VERSION_ID="7"
[2024-05-21 07:55:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-21 07:55:32] ANSI_COLOR="0;31"
[2024-05-21 07:55:32] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-21 07:55:32] HOME_URL="https://www.centos.org/"
[2024-05-21 07:55:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-21 07:55:32] 
[2024-05-21 07:55:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-21 07:55:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-21 07:55:32] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-21 07:55:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-21 07:55:32] 
[2024-05-21 07:55:32] 2024-05-21 05:53:25,063 | INFO     | *************************************
[2024-05-21 07:55:32] 2024-05-21 05:53:25,566 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2024-05-21 07:55:32] 2024-05-21 05:53:25,586 | INFO     | sufficient remaining disk space (577636401152 B)
[2024-05-21 07:55:32] 2024-05-21 05:53:25,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-21 07:55:32] 2024-05-21 05:53:25,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-21 07:55:32] 2024-05-21 05:53:25,587 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-21 07:55:32] 2024-05-21 05:53:25,587 | INFO     | aborting loop
[2024-05-21 07:55:32] 2024-05-21 05:53:25,588 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-21 07:55:32] 2024-05-21 05:53:25,588 | INFO     | found 0 job(s) in 20 queues
[2024-05-21 07:55:32] 2024-05-21 05:53:25,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-21 07:55:32] 2024-05-21 05:53:25,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-21 07:55:32] 2024-05-21 05:53:26,041 | INFO     | all job control threads have been joined
[2024-05-21 07:55:32] 2024-05-21 05:53:26,242 | INFO     | all payload control threads have been joined
[2024-05-21 07:55:32] 2024-05-21 05:53:26,317 | INFO     | all data control threads have been joined
[2024-05-21 07:55:32] 2024-05-21 05:53:26,592 | INFO     | [job] retrieve thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:26,592 | INFO     | [job] job monitor thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:26,894 | INFO     | [payload] validate_post thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-21 07:55:32] 2024-05-21 05:53:27,042 | INFO     | [payload] validate_pre thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,047 | INFO     | [job] control thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,079 | INFO     | [payload] failed_post thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,229 | INFO     | [data] copytool_in thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,247 | INFO     | [payload] control thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,308 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-21 07:55:32] 2024-05-21 05:53:27,322 | INFO     | [data] control thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,542 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,603 | INFO     | [payload] execute_payloads thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:27,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-21 07:55:32] 2024-05-21 05:53:28,041 | INFO     | [job] create_data_payload thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:28,072 | INFO     | [job] validate thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:28,681 | INFO     | [job] queue monitor thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:29,037 | INFO     | [data] copytool_out thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:31,313 | INFO     | [data] queue_monitor thread has finished
[2024-05-21 07:55:32] 2024-05-21 05:53:32,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47655213528128)>', '<ExcThread(monitor, started 47655388980992)>']
[2024-05-21 07:55:32] 2024-05-21 05:53:32,623 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-21 07:55:32] 2024-05-21 05:53:32,624 | INFO     | [monitor] control thread has ended
[2024-05-21 07:55:32] 2024-05-21 05:53:37,056 | INFO     | all workflow threads have been joined
[2024-05-21 07:55:32] 2024-05-21 05:53:37,057 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-21 07:55:32] 2024-05-21 05:53:37,057 | INFO     | traces error code: 0
[2024-05-21 07:55:32] 2024-05-21 05:53:37,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-21 07:55:32] 2024-05-21 05:53:37,129 [wrapper] ==== pilot stdout END ====
[2024-05-21 07:55:32] 2024-05-21 05:53:37,132 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-21 07:55:32] 2024-05-21 05:53:37,135 [wrapper] pilotpid: 508653
[2024-05-21 07:55:32] 2024-05-21 05:53:37,138 [wrapper] Pilot exit status: 0
[2024-05-21 07:55:32] 2024-05-21 05:53:37,147 [wrapper] pandaids: 6208140776
[2024-05-21 07:55:32] 2024-05-21 05:53:37,247 [wrapper] cleanup: SIGTERM to supervisor_pilot  907211 508654
[2024-05-21 07:55:32] 2024-05-21 05:53:37,262 [wrapper] Test setup, not cleaning
[2024-05-21 07:55:32] 2024-05-21 05:53:37,264 [wrapper] ==== wrapper stdout END ====
[2024-05-21 07:55:32] 2024-05-21 05:53:37,271 [wrapper] ==== wrapper stderr END ====
[2024-05-21 07:55:32] 2024-05-21 05:53:37,276 [wrapper] apfmon messages muted
[2024-05-21 07:55:32]  *** Error codes and diagnostics ***
[2024-05-21 07:55:32]     "exeErrorCode": 0,
[2024-05-21 07:55:32]     "exeErrorDiag": "",
[2024-05-21 07:55:32]     "pilotErrorCode": 0,
[2024-05-21 07:55:32]     "pilotErrorDiag": "",
[2024-05-21 07:55:32]  *** Listing of results directory ***
[2024-05-21 07:55:32] total 818476
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc      5633 May 17 17:27 queuedata.json
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc    467845 May 17 17:27 pilot3.tar.gz
[2024-05-21 07:55:32] -rwx------ 1 boinc boinc     32251 May 17 17:28 runpilot2-wrapper.sh
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc       100 May 21 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-21 07:55:32] -rwxr-xr-x 1 boinc boinc      7986 May 21 05:18 run_atlas
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc       105 May 21 05:18 job.xml
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc      6662 May 21 05:42 init_data.xml
[2024-05-21 07:55:32] -rw-r--r-- 2 boinc boinc 599943025 May 21 05:42 EVNT.38776100._000159.pool.root.1
[2024-05-21 07:55:32] -rw-r--r-- 2 boinc boinc     17537 May 21 05:42 start_atlas.sh
[2024-05-21 07:55:32] drwxrwx--x 2 boinc boinc      4096 May 21 05:42 shared
[2024-05-21 07:55:32] -rw-r--r-- 2 boinc boinc    480004 May 21 05:42 input.tar.gz
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc         0 May 21 05:42 boinc_lockfile
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc      2641 May 21 05:42 pandaJob.out
[2024-05-21 07:55:32] -rw------- 1 boinc boinc       424 May 21 05:42 setup.sh.local
[2024-05-21 07:55:32] -rw------- 1 boinc boinc   1014363 May 21 05:42 agis_schedconf.cvmfs.json
[2024-05-21 07:55:32] -rw------- 1 boinc boinc         0 May 21 05:42 agis_ddmendpoints.agis.ALL.json
[2024-05-21 07:55:32] -rw------- 1 boinc boinc   1324701 May 21 05:42 cric_ddmendpoints.json
[2024-05-21 07:55:32] drwx------ 4 boinc boinc      4096 May 21 05:42 pilot3
[2024-05-21 07:55:32] -rw------- 1 boinc boinc        95 May 21 07:52 pilot_heartbeat.json
[2024-05-21 07:55:32] -rw------- 1 boinc boinc 232477938 May 21 07:52 HITS.38776104._013329.pool.root.1
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc       531 May 21 07:53 boinc_task_state.xml
[2024-05-21 07:55:32] -rw------- 1 boinc boinc      1048 May 21 07:53 memory_monitor_summary.json
[2024-05-21 07:55:32] -rw------- 1 boinc boinc    266211 May 21 07:53 log.38776104._013329.job.log.tgz.1
[2024-05-21 07:55:32] -rw------- 1 boinc boinc      7758 May 21 07:53 heartbeat.json
[2024-05-21 07:55:32] -rw------- 1 boinc boinc      4344 May 21 07:53 pilotlog.txt
[2024-05-21 07:55:32] -rw------- 1 boinc boinc    817538 May 21 07:53 log.38776104._013329.job.log.1
[2024-05-21 07:55:32] -rw------- 1 boinc boinc       357 May 21 07:53 output.list
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc       620 May 21 07:53 runtime_log
[2024-05-21 07:55:32] -rw------- 1 boinc boinc   1105920 May 21 07:53 result.tar.gz
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc     11409 May 21 07:53 runtime_log.err
[2024-05-21 07:55:32] -rw------- 1 boinc boinc       653 May 21 07:53 275MDmIgES5nsSi4apGgGQJmABFKDmABFKDm4ySLDmTERKDmdZdQOm.diag
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc        27 May 21 07:55 wrapper_checkpoint.txt
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc      8192 May 21 07:55 boinc_mmap_file
[2024-05-21 07:55:32] -rw-r--r-- 1 boinc boinc     21307 May 21 07:55 stderr.txt
[2024-05-21 07:55:32] HITS file was successfully produced:
[2024-05-21 07:55:32] -rw------- 1 boinc boinc 232477938 May 21 07:52 shared/HITS.pool.root.1
[2024-05-21 07:55:32]  *** Contents of shared directory: ***
[2024-05-21 07:55:32] total 814496
[2024-05-21 07:55:32] -rw-r--r-- 2 boinc boinc 599943025 May 21 05:42 ATLAS.root_0
[2024-05-21 07:55:32] -rw-r--r-- 2 boinc boinc     17537 May 21 05:42 start_atlas.sh
[2024-05-21 07:55:32] -rw-r--r-- 2 boinc boinc    480004 May 21 05:42 input.tar.gz
[2024-05-21 07:55:32] -rw------- 1 boinc boinc 232477938 May 21 07:52 HITS.pool.root.1
[2024-05-21 07:55:32] -rw------- 1 boinc boinc   1105920 May 21 07:53 result.tar.gz
07:55:34 (504342): run_atlas exited; CPU time 28461.446510
07:55:34 (504342): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN