Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
19:11:56 (199818): wrapper (7.7.26015): starting
19:11:56 (199818): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 19:11:56] Arguments: --nthreads 12
[2024-05-17 19:11:56] Threads: 12
[2024-05-17 19:11:56] Checking for CVMFS
[2024-05-17 19:11:57] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 19:11:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 19:11:57] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 19:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 19:11:57] 2.10.1.0 2803 173043 195464 132862 2 176 45172952 45568001 13293 130560 0 1097288323 99.778 648178897 18239 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-17 19:11:57] CVMFS is ok
[2024-05-17 19:11:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 19:11:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 19:11:57] Further information can be found at the LHC@home message board.
[2024-05-17 19:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 19:11:57] Checking for apptainer binary...
[2024-05-17 19:11:57] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 19:11:57] Running /usr/bin/apptainer --version
[2024-05-17 19:11:57] apptainer version 1.1.8-1.el7
[2024-05-17 19:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 19:11:58] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0137.triumf.lcg
[2024-05-17 19:11:58] apptainer works
[2024-05-17 19:11:58] Set ATHENA_PROC_NUMBER=12
[2024-05-17 19:11:58] Set ATHENA_CORE_NUMBER=12
[2024-05-17 19:11:58] Starting ATLAS job with PandaID=6208106850
[2024-05-17 19:11:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 20:34:09]  *** The last 200 lines of the pilot log: ***
[2024-05-17 20:34:09]  guid=ae9e49f9-b99a-4d43-a4a3-284dd6d5f50d
[2024-05-17 20:34:09]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 20:34:09]  is_tar=False
[2024-05-17 20:34:09]  lfn=log.38776146._015416.job.log.tgz.1
[2024-05-17 20:34:09]  mtime=0
[2024-05-17 20:34:09]  protocol_id=None
[2024-05-17 20:34:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 20:34:09]  replicas=None
[2024-05-17 20:34:09]  scope=mc23_13p6TeV
[2024-05-17 20:34:09]  status=None
[2024-05-17 20:34:09]  status_code=0
[2024-05-17 20:34:09]  storage_token=
[2024-05-17 20:34:09]  surl=/home/boinc/slots/0/PanDA_Pilot-6208106850/log.38776146._015416.job.log.tgz.1
[2024-05-17 20:34:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/5b/log.38776146._015416.job.log.tgz.1
[2024-05-17 20:34:09]  workdir=None
[2024-05-17 20:34:09] ]
[2024-05-17 20:34:09] 2024-05-18 03:33:39,097 | INFO     | transferring file log.38776146._015416.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208106850/log.38776146._015416.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 20:34:09] 2024-05-18 03:33:39,097 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208106850/log.38776146._015416.job.log.tgz.1 /home/boinc/slots/0/log.38776146._015416.job.log.t
[2024-05-17 20:34:09] 2024-05-18 03:33:39,126 | INFO     | adding to output.list: log.38776146._015416.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0a/5b/log.38776146._015416.job.log.tg
[2024-05-17 20:34:09] 2024-05-18 03:33:39,126 | INFO     | summary of transferred files:
[2024-05-17 20:34:09] 2024-05-18 03:33:39,126 | INFO     |  -- lfn=log.38776146._015416.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 20:34:09] 2024-05-18 03:33:39,126 | INFO     | stage-out finished correctly
[2024-05-17 20:34:09] 2024-05-18 03:33:39,554 | INFO     | monitor loop #383: job 0:6208106850 is in state 'finished'
[2024-05-17 20:34:09] 2024-05-18 03:33:39,554 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 20:34:09] 2024-05-18 03:33:41,778 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 20:34:09] 2024-05-18 03:33:42,055 | INFO     | job 6208106850 has state=finished
[2024-05-17 20:34:09] 2024-05-18 03:33:42,055 | INFO     | preparing for final server update for job 6208106850 in state='finished'
[2024-05-17 20:34:09] 2024-05-18 03:33:42,056 | INFO     | this job has now completed (state=finished)
[2024-05-17 20:34:09] 2024-05-18 03:33:42,056 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 20:34:09] 2024-05-18 03:33:42,056 | INFO     | job 6208106850 has finished - writing final server update
[2024-05-17 20:34:09] 2024-05-18 03:33:42,056 | INFO     | total number of processed events: 400 (read)
[2024-05-17 20:34:09] 2024-05-18 03:33:42,058 | INFO     | monitor loop #384: job 0:6208106850 is in state 'finished'
[2024-05-17 20:34:09] 2024-05-18 03:33:42,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 20:34:09] 2024-05-18 03:33:42,062 | INFO     | executing command: lscpu
[2024-05-17 20:34:09] 2024-05-18 03:33:42,125 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 20:34:09] 2024-05-18 03:33:42,126 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 20:34:09] 2024-05-18 03:33:42,196 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 20:34:09] 2024-05-18 03:33:44,562 | INFO     | monitor loop #385: job 0:6208106850 is in state 'finished'
[2024-05-17 20:34:09] 2024-05-18 03:33:44,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 20:34:09] 2024-05-18 03:33:46,070 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 20:34:09] 2024-05-18 03:33:46,071 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208106850/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 20:34:09] 2024-05-18 03:33:46,072 | INFO     | extracted standard info from prmon json
[2024-05-17 20:34:09] 2024-05-18 03:33:46,073 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 20:34:09] 2024-05-18 03:33:46,073 | WARNING  | GPU info not found in prmon json
[2024-05-17 20:34:09] 2024-05-18 03:33:46,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 20:34:09] 2024-05-18 03:33:46,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 20:34:09] 2024-05-18 03:33:46,076 | INFO     | fitting pss+swap vs Time
[2024-05-17 20:34:09] 2024-05-18 03:33:46,076 | INFO     | model: linear, x: [1715998659.0, 1715998720.0, 1715998781.0, 1715998842.0, 1715998903.0, 1715998964.0, 1715999025.0, 1715999086.0, 1715999147.0, 1715999208.0, 1715
[2024-05-17 20:34:09] 2024-05-18 03:33:46,077 | INFO     | sum of square deviations: 120605052.0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,077 | INFO     | sum of deviations: 28782308014.999996
[2024-05-17 20:34:09] 2024-05-18 03:33:46,077 | INFO     | mean x: 1716000855.0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,077 | INFO     | mean y: 2604194.2602739725
[2024-05-17 20:34:09] 2024-05-18 03:33:46,077 | INFO     | -- intersect: -409519752817.8933
[2024-05-17 20:34:09] 2024-05-18 03:33:46,078 | INFO     | intersect: -409519752817.8933
[2024-05-17 20:34:09] 2024-05-18 03:33:46,078 | INFO     | chi2: 2.8036556734799842
[2024-05-17 20:34:09] 2024-05-18 03:33:46,078 | INFO     | -- intersect: -409519752817.8933
[2024-05-17 20:34:09] 2024-05-18 03:33:46,078 | INFO     | current memory leak: 238.65 B/s (using 73 data points, chi2=2.80)
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | ..............................
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . Timing measurements:
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . get job = 0 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . initial setup = 2 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . payload setup = 5 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . stage-in = 0 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . payload execution = 4863 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,079 | INFO     | . stage-out = 0 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,080 | INFO     | . log creation = 0 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,080 | INFO     | ..............................
[2024-05-17 20:34:09] 2024-05-18 03:33:46,276 | INFO     | 
[2024-05-17 20:34:09] 2024-05-18 03:33:46,276 | INFO     | job summary report
[2024-05-17 20:34:09] 2024-05-18 03:33:46,276 | INFO     | --------------------------------------------------
[2024-05-17 20:34:09] 2024-05-18 03:33:46,276 | INFO     | PanDA job id: 6208106850
[2024-05-17 20:34:09] 2024-05-18 03:33:46,276 | INFO     | task id: 38776146
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | errors: (none)
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | pilot state: finished 
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | transexitcode: 0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | exeerrorcode: 0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | exeerrordiag: 
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | exitcode: 0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | exitmsg: OK
[2024-05-17 20:34:09] 2024-05-18 03:33:46,277 | INFO     | cpuconsumptiontime: 46207 s
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | nevents: 400
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | neventsw: 0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | pid: 210522
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | pgrp: 210522
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | corecount: 12
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | event service: False
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | sizes: {0: 2392172, 1: 2392172, 5: 2392406, 11: 2392462, 4873: 2418676, 4875: 2427630, 4878: 2427814, 4882: 2427984}
[2024-05-17 20:34:09] 2024-05-18 03:33:46,278 | INFO     | --------------------------------------------------
[2024-05-17 20:34:09] 2024-05-18 03:33:46,279 | INFO     | 
[2024-05-17 20:34:09] 2024-05-18 03:33:46,279 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 20:34:09] 2024-05-18 03:33:46,311 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 20:34:09] 2024-05-18 03:33:46,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,314 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 20:34:09] 2024-05-18 03:33:46,314 | INFO     | job 6208106850 has completed (purged errors)
[2024-05-17 20:34:09] 2024-05-18 03:33:46,314 | INFO     | overall cleanup function is called
[2024-05-17 20:34:09] 2024-05-18 03:33:47,323 | INFO     | --- collectZombieJob: --- 10, [210522]
[2024-05-17 20:34:09] 2024-05-18 03:33:47,323 | INFO     | zombie collector waiting for pid 210522
[2024-05-17 20:34:09] 2024-05-18 03:33:47,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 20:34:09] 2024-05-18 03:33:48,329 | INFO     | collected zombie processes
[2024-05-17 20:34:09] 2024-05-18 03:33:48,329 | INFO     | will now attempt to kill all subprocesses of pid=210522
[2024-05-17 20:34:09] 2024-05-18 03:33:48,529 | INFO     | process IDs to be killed: [210522] (in reverse order)
[2024-05-17 20:34:09] 2024-05-18 03:33:48,687 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 20:34:09] 2024-05-18 03:33:48,687 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 20:34:09] 2024-05-18 03:33:48,699 | INFO     | did not find any defunct processes belonging to 210522
[2024-05-17 20:34:09] 2024-05-18 03:33:48,710 | INFO     | did not find any defunct processes belonging to 210522
[2024-05-17 20:34:09] 2024-05-18 03:33:48,710 | INFO     | ready for new job
[2024-05-17 20:34:09] 2024-05-18 03:33:48,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 20:34:09] 2024-05-18 03:33:48,712 | INFO     | *************************************
[2024-05-17 20:34:09] 2024-05-18 03:33:48,713 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 20:34:09] 2024-05-18 03:33:48,713 | INFO     | *************************************
[2024-05-17 20:34:09] 2024-05-18 03:33:48,713 | INFO     | 
[2024-05-17 20:34:09] 2024-05-18 03:33:48,717 | INFO     | architecture information:
[2024-05-17 20:34:09] 2024-05-18 03:33:48,718 | INFO     | executing command: cat /etc/os-release
[2024-05-17 20:34:09] 2024-05-18 03:33:48,741 | INFO     | cat /etc/os-release:
[2024-05-17 20:34:09] NAME="CentOS Linux"
[2024-05-17 20:34:09] VERSION="7 (Core)"
[2024-05-17 20:34:09] ID="centos"
[2024-05-17 20:34:09] ID_LIKE="rhel fedora"
[2024-05-17 20:34:09] VERSION_ID="7"
[2024-05-17 20:34:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 20:34:09] ANSI_COLOR="0;31"
[2024-05-17 20:34:09] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 20:34:09] HOME_URL="https://www.centos.org/"
[2024-05-17 20:34:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 20:34:09] 
[2024-05-17 20:34:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 20:34:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 20:34:09] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 20:34:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 20:34:09] 
[2024-05-17 20:34:09] 2024-05-18 03:33:48,742 | INFO     | *************************************
[2024-05-17 20:34:09] 2024-05-18 03:33:49,245 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 20:34:09] 2024-05-18 03:33:49,273 | INFO     | sufficient remaining disk space (2142142201856 B)
[2024-05-17 20:34:09] 2024-05-18 03:33:49,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 20:34:09] 2024-05-18 03:33:49,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 20:34:09] 2024-05-18 03:33:49,573 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-17 20:34:09] 2024-05-18 03:33:49,573 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-17 20:34:09] 2024-05-18 03:33:49,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 20:34:09] 2024-05-18 03:33:49,574 | INFO     | all payload control threads have been joined
[2024-05-17 20:34:09] 2024-05-18 03:33:49,574 | INFO     | will abort loop
[2024-05-17 20:34:09] 2024-05-18 03:33:49,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 20:34:09] 2024-05-18 03:33:50,044 | INFO     | all job control threads have been joined
[2024-05-17 20:34:09] 2024-05-18 03:33:50,072 | INFO     | all data control threads have been joined
[2024-05-17 20:34:09] 2024-05-18 03:33:50,158 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 20:34:09] 2024-05-18 03:33:50,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 20:34:09] 2024-05-18 03:33:50,159 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 20:34:09] 2024-05-18 03:33:50,280 | INFO     | [job] retrieve thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:50,469 | INFO     | [data] copytool_in thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:50,545 | INFO     | [job] validate thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:50,580 | INFO     | [job] job monitor thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:50,581 | INFO     | [payload] control thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:50,599 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:50,933 | INFO     | [payload] validate_post thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:51,008 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:51,051 | INFO     | [job] control thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:51,077 | INFO     | [data] control thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:51,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 20:34:09] 2024-05-18 03:33:51,540 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:51,698 | INFO     | [data] copytool_out thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:51,805 | INFO     | [payload] failed_post thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:52,200 | INFO     | [job] queue monitor thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:33:52,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 20:34:09] 2024-05-18 03:33:56,391 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:34:00,086 | INFO     | job.realtimelogging is not enabled
[2024-05-17 20:34:09] 2024-05-18 03:34:01,091 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 20:34:09] 2024-05-18 03:34:02,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652230747968)>', '<ExcThread(monitor, started 139652018026240)>']
[2024-05-17 20:34:09] 2024-05-18 03:34:03,226 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 20:34:09] 2024-05-18 03:34:03,226 | INFO     | [monitor] control thread has ended
[2024-05-17 20:34:09] 2024-05-18 03:34:07,773 | INFO     | all workflow threads have been joined
[2024-05-17 20:34:09] 2024-05-18 03:34:07,774 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 20:34:09] 2024-05-18 03:34:07,774 | INFO     | traces error code: 0
[2024-05-17 20:34:09] 2024-05-18 03:34:07,774 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 20:34:09] 2024-05-18 03:34:07,883 [wrapper] ==== pilot stdout END ====
[2024-05-17 20:34:09] 2024-05-18 03:34:07,887 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 20:34:09] 2024-05-18 03:34:07,891 [wrapper] pilotpid: 204027
[2024-05-17 20:34:09] 2024-05-18 03:34:07,896 [wrapper] Pilot exit status: 0
[2024-05-17 20:34:09] 2024-05-18 03:34:07,909 [wrapper] pandaids: 6208106850
[2024-05-17 20:34:09] 2024-05-18 03:34:08,009 [wrapper] cleanup: SIGTERM to supervisor_pilot 276771 204028
[2024-05-17 20:34:09] 2024-05-18 03:34:08,013 [wrapper] Test setup, not cleaning
[2024-05-17 20:34:09] 2024-05-18 03:34:08,017 [wrapper] ==== wrapper stdout END ====
[2024-05-17 20:34:09] 2024-05-18 03:34:08,020 [wrapper] ==== wrapper stderr END ====
[2024-05-17 20:34:09] 2024-05-18 03:34:08,026 [wrapper] apfmon messages muted
[2024-05-17 20:34:09]  *** Error codes and diagnostics ***
[2024-05-17 20:34:09]     "exeErrorCode": 0,
[2024-05-17 20:34:09]     "exeErrorDiag": "",
[2024-05-17 20:34:09]     "pilotErrorCode": 0,
[2024-05-17 20:34:09]     "pilotErrorDiag": "",
[2024-05-17 20:34:09]  *** Listing of results directory ***
[2024-05-17 20:34:09] total 880156
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc    467845 May 17 07:11 pilot3.tar.gz
[2024-05-17 20:34:09] -rwx------ 1 boinc boinc     32251 May 17 07:12 runpilot2-wrapper.sh
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc      5633 May 17 07:12 queuedata.json
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc       100 May 17 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 20:34:09] -rwxr-xr-x 1 boinc boinc      7986 May 17 19:11 run_atlas
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc       105 May 17 19:11 job.xml
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc      6626 May 17 19:11 init_data.xml
[2024-05-17 20:34:09] -rw-r--r-- 2 boinc boinc 616414471 May 17 19:11 EVNT.38776140._000276.pool.root.1
[2024-05-17 20:34:09] -rw-r--r-- 2 boinc boinc     17537 May 17 19:11 start_atlas.sh
[2024-05-17 20:34:09] drwxrwx--x 2 boinc boinc      4096 May 17 19:11 shared
[2024-05-17 20:34:09] -rw-r--r-- 2 boinc boinc    480001 May 17 19:11 input.tar.gz
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc         0 May 17 19:11 boinc_lockfile
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc      2614 May 17 19:11 pandaJob.out
[2024-05-17 20:34:09] -rw------- 1 boinc boinc       424 May 17 19:11 setup.sh.local
[2024-05-17 20:34:09] -rw------- 1 boinc boinc   1019073 May 17 19:12 agis_schedconf.cvmfs.json
[2024-05-17 20:34:09] -rw------- 1 boinc boinc         0 May 17 19:12 agis_ddmendpoints.agis.ALL.json
[2024-05-17 20:34:09] -rw------- 1 boinc boinc   1324701 May 17 19:12 cric_ddmendpoints.json
[2024-05-17 20:34:09] drwx------ 4 boinc boinc      4096 May 17 19:12 pilot3
[2024-05-17 20:34:09] -rw------- 1 boinc boinc 279652469 May 17 20:33 HITS.38776146._015416.pool.root.1
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc       530 May 17 20:33 boinc_task_state.xml
[2024-05-17 20:34:09] -rw------- 1 boinc boinc        95 May 17 20:33 pilot_heartbeat.json
[2024-05-17 20:34:09] -rw------- 1 boinc boinc      1058 May 17 20:33 memory_monitor_summary.json
[2024-05-17 20:34:09] -rw------- 1 boinc boinc    360170 May 17 20:33 log.38776146._015416.job.log.tgz.1
[2024-05-17 20:34:09] -rw------- 1 boinc boinc      7771 May 17 20:33 heartbeat.json
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc        27 May 17 20:34 wrapper_checkpoint.txt
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc      8192 May 17 20:34 boinc_mmap_file
[2024-05-17 20:34:09] -rw------- 1 boinc boinc      4468 May 17 20:34 pilotlog.txt
[2024-05-17 20:34:09] -rw------- 1 boinc boinc    480420 May 17 20:34 log.38776146._015416.job.log.1
[2024-05-17 20:34:09] -rw------- 1 boinc boinc       357 May 17 20:34 output.list
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc       620 May 17 20:34 runtime_log
[2024-05-17 20:34:09] -rw------- 1 boinc boinc    860160 May 17 20:34 result.tar.gz
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc     11286 May 17 20:34 runtime_log.err
[2024-05-17 20:34:09] -rw------- 1 boinc boinc       652 May 17 20:34 JHMKDmaVDS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmSHLKDmHjVRZm.diag
[2024-05-17 20:34:09] -rw-r--r-- 1 boinc boinc     21781 May 17 20:34 stderr.txt
[2024-05-17 20:34:09] HITS file was successfully produced:
[2024-05-17 20:34:09] -rw------- 1 boinc boinc 279652469 May 17 20:33 shared/HITS.pool.root.1
[2024-05-17 20:34:09]  *** Contents of shared directory: ***
[2024-05-17 20:34:09] total 876408
[2024-05-17 20:34:09] -rw-r--r-- 2 boinc boinc 616414471 May 17 19:11 ATLAS.root_0
[2024-05-17 20:34:09] -rw-r--r-- 2 boinc boinc     17537 May 17 19:11 start_atlas.sh
[2024-05-17 20:34:09] -rw-r--r-- 2 boinc boinc    480001 May 17 19:11 input.tar.gz
[2024-05-17 20:34:09] -rw------- 1 boinc boinc 279652469 May 17 20:33 HITS.pool.root.1
[2024-05-17 20:34:09] -rw------- 1 boinc boinc    860160 May 17 20:34 result.tar.gz
20:34:11 (199818): run_atlas exited; CPU time 46012.846197
20:34:11 (199818): called boinc_finish(0)

</stderr_txt>
]]>

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