Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:21:06 (1032559): wrapper (7.7.26015): starting
16:21:06 (1032559): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 16:21:06] Arguments: --nthreads 12
[2024-05-18 16:21:06] Threads: 12
[2024-05-18 16:21:06] Checking for CVMFS
[2024-05-18 16:21:06] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 16:21:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 16:21:06] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 16:21:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 16:21:07] 2.11.2.0 114863 3483 82508 132889 0 55 3253141 4096001 0 65024 1 3323890 99.854 822149 1242 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2024-05-18 16:21:07] CVMFS is ok
[2024-05-18 16:21:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 16:21:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 16:21:07] Small home clusters do not require a local http proxy but it is suggested if
[2024-05-18 16:21:07] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-05-18 16:21:07] Further information can be found at the LHC@home message board.
[2024-05-18 16:21:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 16:21:07] Checking for apptainer binary...
[2024-05-18 16:21:07] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-18 16:21:07] Running /usr/bin/apptainer --version
[2024-05-18 16:21:07] /usr/bin/apptainer: symbol lookup error: /usr/bin/apptainer: undefined symbol: seccomp_notify_respond
[2024-05-18 16:21:07] apptainer seems to be installed but not working
[2024-05-18 16:21:07] Will use version from CVMFS
[2024-05-18 16:21:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 16:21:07] sarnet8.local
[2024-05-18 16:21:07] apptainer works
[2024-05-18 16:21:07] Set ATHENA_PROC_NUMBER=12
[2024-05-18 16:21:07] Set ATHENA_CORE_NUMBER=12
[2024-05-18 16:21:07] Starting ATLAS job with PandaID=6208105245
[2024-05-18 16:21:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 17:42:02]  *** The last 200 lines of the pilot log: ***
[2024-05-18 17:42:02]  direct_access_wan=False
[2024-05-18 17:42:02]  domain=
[2024-05-18 17:42:02]  filesize=368467
[2024-05-18 17:42:02]  filetype=log
[2024-05-18 17:42:02]  guid=24af01e8-59e0-48ff-bc44-7141cbd3998b
[2024-05-18 17:42:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 17:42:02]  is_tar=False
[2024-05-18 17:42:02]  lfn=log.38776146._015236.job.log.tgz.1
[2024-05-18 17:42:02]  mtime=0
[2024-05-18 17:42:02]  protocol_id=None
[2024-05-18 17:42:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 17:42:02]  replicas=None
[2024-05-18 17:42:02]  scope=mc23_13p6TeV
[2024-05-18 17:42:02]  status=None
[2024-05-18 17:42:02]  status_code=0
[2024-05-18 17:42:02]  storage_token=
[2024-05-18 17:42:02]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6208105245/log.38776146._015236.job.log.tgz.1
[2024-05-18 17:42:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/2b/log.38776146._015236.job.log.tgz.1
[2024-05-18 17:42:02]  workdir=None
[2024-05-18 17:42:02] ]
[2024-05-18 17:42:02] 2024-05-18 21:41:35,434 | INFO     | transferring file log.38776146._015236.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6208105245/log.38776146._015236.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-05-18 17:42:02] 2024-05-18 21:41:35,434 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6208105245/log.38776146._015236.job.log.tgz.1 /var/lib/boinc/slots/0/log.38776146._015236.job
[2024-05-18 17:42:02] 2024-05-18 21:41:35,450 | INFO     | adding to output.list: log.38776146._015236.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/2b/log.38776146._015236.job.log.tg
[2024-05-18 17:42:02] 2024-05-18 21:41:35,451 | INFO     | summary of transferred files:
[2024-05-18 17:42:02] 2024-05-18 21:41:35,451 | INFO     |  -- lfn=log.38776146._015236.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 17:42:02] 2024-05-18 21:41:35,451 | INFO     | stage-out finished correctly
[2024-05-18 17:42:02] 2024-05-18 21:41:35,497 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 17:42:02] 2024-05-18 21:41:35,537 | INFO     | job 6208105245 has state=finished
[2024-05-18 17:42:02] 2024-05-18 21:41:35,537 | INFO     | preparing for final server update for job 6208105245 in state='finished'
[2024-05-18 17:42:02] 2024-05-18 21:41:35,538 | INFO     | this job has now completed (state=finished)
[2024-05-18 17:42:02] 2024-05-18 21:41:35,538 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 17:42:02] 2024-05-18 21:41:35,538 | INFO     | job 6208105245 has finished - writing final server update
[2024-05-18 17:42:02] 2024-05-18 21:41:35,538 | INFO     | total number of processed events: 400 (read)
[2024-05-18 17:42:02] 2024-05-18 21:41:35,539 | INFO     | executing command: lscpu
[2024-05-18 17:42:02] 2024-05-18 21:41:35,557 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2024-05-18 17:42:02] 2024-05-18 21:41:35,557 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 17:42:02] 2024-05-18 21:41:35,589 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 17:42:02] 2024-05-18 21:41:35,895 | INFO     | 4822s have passed since pilot start
[2024-05-18 17:42:02] 2024-05-18 21:41:41,810 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-18 17:42:02] 2024-05-18 21:41:41,811 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6208105245/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 17:42:02] 2024-05-18 21:41:41,811 | INFO     | extracted standard info from prmon json
[2024-05-18 17:42:02] 2024-05-18 21:41:41,811 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 17:42:02] 2024-05-18 21:41:41,811 | WARNING  | GPU info not found in prmon json
[2024-05-18 17:42:02] 2024-05-18 21:41:41,812 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 17:42:02] 2024-05-18 21:41:41,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | fitting pss+swap vs Time
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | model: linear, x: [1716064000.0, 1716064061.0, 1716064122.0, 1716064183.0, 1716064244.0, 1716064305.0, 1716064366.0, 1716064427.0, 1716064488.0, 1716064549.0, 1716
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | sum of square deviations: 115715658.0
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | sum of deviations: 7950911837.000002
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | mean x: 1716066165.5
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | mean y: 2929170.972222222
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | -- intersect: -117909296574.21736
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | intersect: -117909296574.21736
[2024-05-18 17:42:02] 2024-05-18 21:41:41,813 | INFO     | chi2: 1.8245906378888297
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | -- intersect: -117909296574.21736
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | current memory leak: 68.71 B/s (using 72 data points, chi2=1.82)
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | ..............................
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . Timing measurements:
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . get job = 0 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . initial setup = 1 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . payload setup = 3 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . stage-in = 0 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . payload execution = 4799 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . stage-out = 0 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | . log creation = 0 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,814 | INFO     | ..............................
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | 
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | job summary report
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | --------------------------------------------------
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | PanDA job id: 6208105245
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | task id: 38776146
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | errors: (none)
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 17:42:02] 2024-05-18 21:41:41,872 | INFO     | pilot state: finished 
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | transexitcode: 0
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | exeerrorcode: 0
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | exeerrordiag: 
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | exitcode: 0
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | exitmsg: OK
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | cpuconsumptiontime: 47129 s
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | nevents: 400
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | neventsw: 0
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | pid: 1043241
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | pgrp: 1043241
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | corecount: 12
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | event service: False
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | sizes: {0: 2392175, 1: 2392175, 3: 2392409, 11: 2392437, 4805: 2418497, 4806: 2418496, 4807: 2427696, 4813: 2427810}
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | --------------------------------------------------
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | 
[2024-05-18 17:42:02] 2024-05-18 21:41:41,873 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-05-18 17:42:02] 2024-05-18 21:41:41,894 | WARNING  | process 1043241 is no longer using CPU - aborting
[2024-05-18 17:42:02] 2024-05-18 21:41:41,894 | INFO     | aborting job monitoring since job object (job id=6208105245) has expired
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | job 6208105245 has completed (purged errors)
[2024-05-18 17:42:02] 2024-05-18 21:41:41,915 | INFO     | overall cleanup function is called
[2024-05-18 17:42:02] 2024-05-18 21:41:42,923 | INFO     | --- collectZombieJob: --- 10, [1043241]
[2024-05-18 17:42:02] 2024-05-18 21:41:42,923 | INFO     | zombie collector waiting for pid 1043241
[2024-05-18 17:42:02] 2024-05-18 21:41:42,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 17:42:02] 2024-05-18 21:41:43,928 | INFO     | collected zombie processes
[2024-05-18 17:42:02] 2024-05-18 21:41:43,928 | INFO     | will now attempt to kill all subprocesses of pid=1043241
[2024-05-18 17:42:02] 2024-05-18 21:41:43,985 | INFO     | process IDs to be killed: [1043241] (in reverse order)
[2024-05-18 17:42:02] 2024-05-18 21:41:44,024 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 17:42:02] 2024-05-18 21:41:44,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 17:42:02] 2024-05-18 21:41:44,025 | INFO     | did not find any defunct processes belonging to 1043241
[2024-05-18 17:42:02] 2024-05-18 21:41:44,027 | INFO     | did not find any defunct processes belonging to 1043241
[2024-05-18 17:42:02] 2024-05-18 21:41:44,027 | INFO     | ready for new job
[2024-05-18 17:42:02] 2024-05-18 21:41:44,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 17:42:02] 2024-05-18 21:41:44,028 | INFO     | *************************************
[2024-05-18 17:42:02] 2024-05-18 21:41:44,028 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 17:42:02] 2024-05-18 21:41:44,028 | INFO     | *************************************
[2024-05-18 17:42:02] 2024-05-18 21:41:44,028 | INFO     | 
[2024-05-18 17:42:02] 2024-05-18 21:41:44,029 | INFO     | pilot is running in a VM
[2024-05-18 17:42:02] 2024-05-18 21:41:44,029 | INFO     | architecture information:
[2024-05-18 17:42:02] 2024-05-18 21:41:44,029 | INFO     | executing command: cat /etc/os-release
[2024-05-18 17:42:02] 2024-05-18 21:41:44,044 | INFO     | cat /etc/os-release:
[2024-05-18 17:42:02] NAME="CentOS Linux"
[2024-05-18 17:42:02] VERSION="7 (Core)"
[2024-05-18 17:42:02] ID="centos"
[2024-05-18 17:42:02] ID_LIKE="rhel fedora"
[2024-05-18 17:42:02] VERSION_ID="7"
[2024-05-18 17:42:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 17:42:02] ANSI_COLOR="0;31"
[2024-05-18 17:42:02] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 17:42:02] HOME_URL="https://www.centos.org/"
[2024-05-18 17:42:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 17:42:02] 
[2024-05-18 17:42:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 17:42:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 17:42:02] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 17:42:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 17:42:02] 
[2024-05-18 17:42:02] 2024-05-18 21:41:44,044 | INFO     | *************************************
[2024-05-18 17:42:02] 2024-05-18 21:41:44,547 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-05-18 17:42:02] 2024-05-18 21:41:44,562 | INFO     | sufficient remaining disk space (25584205824 B)
[2024-05-18 17:42:02] 2024-05-18 21:41:44,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 17:42:02] 2024-05-18 21:41:44,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 17:42:02] 2024-05-18 21:41:44,642 | INFO     | all payload control threads have been joined
[2024-05-18 17:42:02] 2024-05-18 21:41:44,851 | INFO     | all job control threads have been joined
[2024-05-18 17:42:02] 2024-05-18 21:41:44,922 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 17:42:02] 2024-05-18 21:41:44,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 17:42:02] 2024-05-18 21:41:44,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 17:42:02] 2024-05-18 21:41:45,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 17:42:02] 2024-05-18 21:41:45,403 | INFO     | aborting loop
[2024-05-18 17:42:02] 2024-05-18 21:41:45,568 | INFO     | [job] retrieve thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:45,610 | INFO     | all data control threads have been joined
[2024-05-18 17:42:02] 2024-05-18 21:41:45,647 | INFO     | [payload] control thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:45,856 | INFO     | [job] control thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:45,896 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 17:42:02] 2024-05-18 21:41:46,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 17:42:02] 2024-05-18 21:41:46,163 | INFO     | [payload] failed_post thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,408 | INFO     | [job] job monitor thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,431 | INFO     | [job] validate thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,448 | INFO     | [data] copytool_in thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,544 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,616 | INFO     | [data] control thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,760 | INFO     | [payload] validate_post thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:46,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 17:42:02] 2024-05-18 21:41:47,061 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:47,888 | INFO     | [job] queue monitor thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:48,017 | INFO     | [data] copytool_out thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:50,052 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:55,577 | INFO     | job.realtimelogging is not enabled
[2024-05-18 17:42:02] 2024-05-18 21:41:56,582 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 17:42:02] 2024-05-18 21:41:56,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931075553088)>', '<ExcThread(monitor, started 139930420369152)>']
[2024-05-18 17:42:02] 2024-05-18 21:41:56,981 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 17:42:02] 2024-05-18 21:41:56,982 | INFO     | [monitor] control thread has ended
[2024-05-18 17:42:02] 2024-05-18 21:42:01,909 | INFO     | all workflow threads have been joined
[2024-05-18 17:42:02] 2024-05-18 21:42:01,909 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 17:42:02] 2024-05-18 21:42:01,909 | INFO     | traces error code: 0
[2024-05-18 17:42:02] 2024-05-18 21:42:01,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 17:42:02] 2024-05-18 21:42:01,965 [wrapper] ==== pilot stdout END ====
[2024-05-18 17:42:02] 2024-05-18 21:42:01,966 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 17:42:02] 2024-05-18 21:42:01,968 [wrapper] pilotpid: 1036759
[2024-05-18 17:42:02] 2024-05-18 21:42:01,970 [wrapper] Pilot exit status: 0
[2024-05-18 17:42:02] 2024-05-18 21:42:01,979 [wrapper] pandaids: 6208105245
[2024-05-18 17:42:02] 2024-05-18 21:42:02,003 [wrapper] cleanup: SIGTERM to supervisor_pilot 1056505 1036760
[2024-05-18 17:42:02] 2024-05-18 21:42:02,005 [wrapper] Test setup, not cleaning
[2024-05-18 17:42:02] 2024-05-18 21:42:02,006 [wrapper] ==== wrapper stdout END ====
[2024-05-18 17:42:02] 2024-05-18 21:42:02,008 [wrapper] ==== wrapper stderr END ====
[2024-05-18 17:42:02] 2024-05-18 21:42:02,012 [wrapper] apfmon messages muted
[2024-05-18 17:42:02]  *** Error codes and diagnostics ***
[2024-05-18 17:42:02]     "exeErrorCode": 0,
[2024-05-18 17:42:02]     "exeErrorDiag": "",
[2024-05-18 17:42:02]     "pilotErrorCode": 0,
[2024-05-18 17:42:02]     "pilotErrorDiag": "",
[2024-05-18 17:42:02]  *** Listing of results directory ***
[2024-05-18 17:42:02] total 869256
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc    467845 May 17 09:39 pilot3.tar.gz
[2024-05-18 17:42:02] -rwx------. 1 boinc boinc     32251 May 17 09:51 runpilot2-wrapper.sh
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc      5633 May 17 09:51 queuedata.json
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc       100 May 18 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 17:42:02] -rwxr-xr-x. 1 boinc boinc      7986 May 18 16:21 run_atlas
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc       105 May 18 16:21 job.xml
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc      6167 May 18 16:21 init_data.xml
[2024-05-18 17:42:02] -rw-r--r--. 2 boinc boinc 613789596 May 18 16:21 EVNT.38776140._000262.pool.root.1
[2024-05-18 17:42:02] -rw-r--r--. 2 boinc boinc     17537 May 18 16:21 start_atlas.sh
[2024-05-18 17:42:02] drwxrwx--x. 2 boinc boinc        68 May 18 16:21 shared
[2024-05-18 17:42:02] -rw-r--r--. 2 boinc boinc    480003 May 18 16:21 input.tar.gz
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc         0 May 18 16:21 boinc_lockfile
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc      2614 May 18 16:21 pandaJob.out
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc       424 May 18 16:21 setup.sh.local
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc   1019075 May 18 16:21 agis_schedconf.cvmfs.json
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc         0 May 18 16:21 agis_ddmendpoints.agis.ALL.json
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc   1324701 May 18 16:21 cric_ddmendpoints.json
[2024-05-18 17:42:02] drwx------. 4 boinc boinc      4096 May 18 16:21 pilot3
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc       530 May 18 17:40 boinc_task_state.xml
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc 271178323 May 18 17:41 HITS.38776146._015236.pool.root.1
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc      1039 May 18 17:41 memory_monitor_summary.json
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc        95 May 18 17:41 pilot_heartbeat.json
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc    368467 May 18 17:41 log.38776146._015236.job.log.tgz.1
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc      7736 May 18 17:41 heartbeat.json
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc      8192 May 18 17:41 boinc_mmap_file
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc        27 May 18 17:41 wrapper_checkpoint.txt
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc      4345 May 18 17:42 pilotlog.txt
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc    449816 May 18 17:42 log.38776146._015236.job.log.1
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc       357 May 18 17:42 output.list
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc       620 May 18 17:42 runtime_log
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc    839680 May 18 17:42 result.tar.gz
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc     10988 May 18 17:42 runtime_log.err
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc       644 May 18 17:42 4b4KDmkADS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmUGLKDmwhhMLm.diag
[2024-05-18 17:42:02] -rw-r--r--. 1 boinc boinc     21547 May 18 17:42 stderr.txt
[2024-05-18 17:42:02] HITS file was successfully produced:
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc 271178323 May 18 17:41 shared/HITS.pool.root.1
[2024-05-18 17:42:02]  *** Contents of shared directory: ***
[2024-05-18 17:42:02] total 865540
[2024-05-18 17:42:02] -rw-r--r--. 2 boinc boinc 613789596 May 18 16:21 ATLAS.root_0
[2024-05-18 17:42:02] -rw-r--r--. 2 boinc boinc     17537 May 18 16:21 start_atlas.sh
[2024-05-18 17:42:02] -rw-r--r--. 2 boinc boinc    480003 May 18 16:21 input.tar.gz
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc 271178323 May 18 17:41 HITS.pool.root.1
[2024-05-18 17:42:02] -rw-------. 1 boinc boinc    839680 May 18 17:42 result.tar.gz
17:42:03 (1032559): run_atlas exited; CPU time 47099.468107
17:42:03 (1032559): called boinc_finish(0)

</stderr_txt>
]]>

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