Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
13:18:40 (118140): wrapper (7.7.26015): starting
13:18:40 (118140): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 13:18:40] Arguments: --nthreads 12
[2024-05-17 13:18:40] Threads: 12
[2024-05-17 13:18:40] Checking for CVMFS
[2024-05-17 13:18:40] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 13:18:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 13:18:40] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 13:18:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 13:18:40] 2.10.1.0 136323 183946 182188 132853 2 63 37228912 45568001 13839 130560 0 1154790395 99.777 675551382 17144 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 13:18:40] CVMFS is ok
[2024-05-17 13:18:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 13:18:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 13:18:40] Further information can be found at the LHC@home message board.
[2024-05-17 13:18:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 13:18:40] Checking for apptainer binary...
[2024-05-17 13:18:40] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 13:18:40] Running /usr/bin/apptainer --version
[2024-05-17 13:18:40] apptainer version 1.1.8-1.el7
[2024-05-17 13:18:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 13:18:41] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0044.triumf.lcg
[2024-05-17 13:18:41] apptainer works
[2024-05-17 13:18:41] Set ATHENA_PROC_NUMBER=12
[2024-05-17 13:18:41] Set ATHENA_CORE_NUMBER=12
[2024-05-17 13:18:41] Starting ATLAS job with PandaID=6208100249
[2024-05-17 13:18:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 14:12:40]  *** The last 200 lines of the pilot log: ***
[2024-05-17 14:12:40]  activity=['pl', 'pw', 'w', 'default']
[2024-05-17 14:12:40]  allow_lan=True
[2024-05-17 14:12:40]  allow_wan=False
[2024-05-17 14:12:40]  checkinputsize=True
[2024-05-17 14:12:40]  checksum={'adler32': 'ec3e33c0'}
[2024-05-17 14:12:40]  dataset=mc23_13p6TeV.802067.Py8EG_A14NNPDF23LO_jetjet_JZ1_4jets15_2bjets.simul.log.e8564_e8528_s4159_tid38776104_00
[2024-05-17 14:12:40]  ddm_activity=['write_lan', 'write_wan']
[2024-05-17 14:12:40]  ddmendpoint=NDGF-T1_DATADISK
[2024-05-17 14:12:40]  direct_access_lan=False
[2024-05-17 14:12:40]  direct_access_wan=False
[2024-05-17 14:12:40]  domain=
[2024-05-17 14:12:40]  filesize=344706
[2024-05-17 14:12:40]  filetype=log
[2024-05-17 14:12:40]  guid=530b31dc-05af-4b0b-9db3-8f0cccab15aa
[2024-05-17 14:12:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 14:12:40]  is_tar=False
[2024-05-17 14:12:40]  lfn=log.38776104._013214.job.log.tgz.1
[2024-05-17 14:12:40]  mtime=0
[2024-05-17 14:12:40]  protocol_id=None
[2024-05-17 14:12:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 14:12:40]  replicas=None
[2024-05-17 14:12:40]  scope=mc23_13p6TeV
[2024-05-17 14:12:40]  status=None
[2024-05-17 14:12:40]  status_code=0
[2024-05-17 14:12:40]  storage_token=
[2024-05-17 14:12:40]  surl=/home/boinc/slots/0/PanDA_Pilot-6208100249/log.38776104._013214.job.log.tgz.1
[2024-05-17 14:12:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/2e/log.38776104._013214.job.log.tgz.1
[2024-05-17 14:12:40]  workdir=None
[2024-05-17 14:12:40] ]
[2024-05-17 14:12:40] 2024-05-17 21:12:13,383 | INFO     | transferring file log.38776104._013214.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208100249/log.38776104._013214.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 14:12:40] 2024-05-17 21:12:13,383 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208100249/log.38776104._013214.job.log.tgz.1 /home/boinc/slots/0/log.38776104._013214.job.log.t
[2024-05-17 14:12:40] 2024-05-17 21:12:13,406 | INFO     | adding to output.list: log.38776104._013214.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/2e/log.38776104._013214.job.log.tg
[2024-05-17 14:12:40] 2024-05-17 21:12:13,407 | INFO     | summary of transferred files:
[2024-05-17 14:12:40] 2024-05-17 21:12:13,407 | INFO     |  -- lfn=log.38776104._013214.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 14:12:40] 2024-05-17 21:12:13,407 | INFO     | stage-out finished correctly
[2024-05-17 14:12:40] 2024-05-17 21:12:14,121 | INFO     | monitor loop #248: job 0:6208100249 is in state 'finished'
[2024-05-17 14:12:40] 2024-05-17 21:12:14,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 14:12:40] 2024-05-17 21:12:14,450 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 14:12:40] 2024-05-17 21:12:15,138 | INFO     | job 6208100249 has state=finished
[2024-05-17 14:12:40] 2024-05-17 21:12:15,138 | INFO     | preparing for final server update for job 6208100249 in state='finished'
[2024-05-17 14:12:40] 2024-05-17 21:12:15,139 | INFO     | this job has now completed (state=finished)
[2024-05-17 14:12:40] 2024-05-17 21:12:15,139 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 14:12:40] 2024-05-17 21:12:15,139 | INFO     | job 6208100249 has finished - writing final server update
[2024-05-17 14:12:40] 2024-05-17 21:12:15,139 | INFO     | total number of processed events: 400 (read)
[2024-05-17 14:12:40] 2024-05-17 21:12:15,144 | INFO     | executing command: lscpu
[2024-05-17 14:12:40] 2024-05-17 21:12:15,207 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 14:12:40] 2024-05-17 21:12:15,208 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 14:12:40] 2024-05-17 21:12:15,258 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 14:12:40] 2024-05-17 21:12:16,625 | INFO     | monitor loop #249: job 0:6208100249 is in state 'finished'
[2024-05-17 14:12:40] 2024-05-17 21:12:16,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 14:12:40] 2024-05-17 21:12:18,888 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 14:12:40] 2024-05-17 21:12:18,888 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208100249/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 14:12:40] 2024-05-17 21:12:18,890 | INFO     | extracted standard info from prmon json
[2024-05-17 14:12:40] 2024-05-17 21:12:18,890 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 14:12:40] 2024-05-17 21:12:18,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 14:12:40] 2024-05-17 21:12:18,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 14:12:40] 2024-05-17 21:12:18,893 | INFO     | fitting pss+swap vs Time
[2024-05-17 14:12:40] 2024-05-17 21:12:18,893 | INFO     | current memory leak: 576.10 B/s (using 45 data points, chi2=1.82)
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | ..............................
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . Timing measurements:
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . get job = 0 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . initial setup = 2 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . payload setup = 6 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . stage-in = 0 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . payload execution = 3171 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . stage-out = 0 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,894 | INFO     | . log creation = 0 s
[2024-05-17 14:12:40] 2024-05-17 21:12:18,895 | INFO     | ..............................
[2024-05-17 14:12:40] 2024-05-17 21:12:19,346 | INFO     | 
[2024-05-17 14:12:40] 2024-05-17 21:12:19,346 | INFO     | job summary report
[2024-05-17 14:12:40] 2024-05-17 21:12:19,346 | INFO     | --------------------------------------------------
[2024-05-17 14:12:40] 2024-05-17 21:12:19,346 | INFO     | PanDA job id: 6208100249
[2024-05-17 14:12:40] 2024-05-17 21:12:19,346 | INFO     | task id: 38776104
[2024-05-17 14:12:40] 2024-05-17 21:12:19,346 | INFO     | errors: (none)
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | pilot state: finished 
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | transexitcode: 0
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | exeerrorcode: 0
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | exeerrordiag: 
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | exitcode: 0
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | exitmsg: OK
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | cpuconsumptiontime: 27256 s
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | nevents: 400
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | neventsw: 0
[2024-05-17 14:12:40] 2024-05-17 21:12:19,347 | INFO     | pid: 129113
[2024-05-17 14:12:40] 2024-05-17 21:12:19,390 | INFO     | pgrp: 129113
[2024-05-17 14:12:40] 2024-05-17 21:12:19,391 | INFO     | corecount: 12
[2024-05-17 14:12:40] 2024-05-17 21:12:19,391 | INFO     | event service: False
[2024-05-17 14:12:40] 2024-05-17 21:12:19,391 | INFO     | sizes: {0: 2390697, 1: 2392230, 6: 2392436, 12: 2392464, 3181: 2417872, 3182: 2426826, 3183: 2427010, 3187: 2427180}
[2024-05-17 14:12:40] 2024-05-17 21:12:19,391 | INFO     | --------------------------------------------------
[2024-05-17 14:12:40] 2024-05-17 21:12:19,391 | INFO     | 
[2024-05-17 14:12:40] 2024-05-17 21:12:19,391 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 14:12:40] 2024-05-17 21:12:19,465 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,466 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,466 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,468 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 14:12:40] 2024-05-17 21:12:19,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,469 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 14:12:40] 2024-05-17 21:12:19,469 | INFO     | job 6208100249 has completed (purged errors)
[2024-05-17 14:12:40] 2024-05-17 21:12:19,469 | INFO     | overall cleanup function is called
[2024-05-17 14:12:40] 2024-05-17 21:12:20,479 | INFO     | --- collectZombieJob: --- 10, [129113]
[2024-05-17 14:12:40] 2024-05-17 21:12:20,479 | INFO     | zombie collector waiting for pid 129113
[2024-05-17 14:12:40] 2024-05-17 21:12:20,480 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 14:12:40] 2024-05-17 21:12:21,485 | INFO     | collected zombie processes
[2024-05-17 14:12:40] 2024-05-17 21:12:21,485 | INFO     | will now attempt to kill all subprocesses of pid=129113
[2024-05-17 14:12:40] 2024-05-17 21:12:21,695 | INFO     | process IDs to be killed: [129113] (in reverse order)
[2024-05-17 14:12:40] 2024-05-17 21:12:21,805 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 14:12:40] 2024-05-17 21:12:21,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 14:12:40] 2024-05-17 21:12:21,813 | INFO     | did not find any defunct processes belonging to 129113
[2024-05-17 14:12:40] 2024-05-17 21:12:21,820 | INFO     | did not find any defunct processes belonging to 129113
[2024-05-17 14:12:40] 2024-05-17 21:12:21,820 | INFO     | ready for new job
[2024-05-17 14:12:40] 2024-05-17 21:12:21,820 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 14:12:40] 2024-05-17 21:12:21,822 | INFO     | *************************************
[2024-05-17 14:12:40] 2024-05-17 21:12:21,822 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-05-17 14:12:40] 2024-05-17 21:12:21,822 | INFO     | *************************************
[2024-05-17 14:12:40] 2024-05-17 21:12:21,822 | INFO     | 
[2024-05-17 14:12:40] 2024-05-17 21:12:21,825 | INFO     | architecture information:
[2024-05-17 14:12:40] 2024-05-17 21:12:21,825 | INFO     | executing command: cat /etc/os-release
[2024-05-17 14:12:40] 2024-05-17 21:12:21,838 | INFO     | cat /etc/os-release:
[2024-05-17 14:12:40] NAME="CentOS Linux"
[2024-05-17 14:12:40] VERSION="7 (Core)"
[2024-05-17 14:12:40] ID="centos"
[2024-05-17 14:12:40] ID_LIKE="rhel fedora"
[2024-05-17 14:12:40] VERSION_ID="7"
[2024-05-17 14:12:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 14:12:40] ANSI_COLOR="0;31"
[2024-05-17 14:12:40] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 14:12:40] HOME_URL="https://www.centos.org/"
[2024-05-17 14:12:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 14:12:40] 
[2024-05-17 14:12:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 14:12:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 14:12:40] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 14:12:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 14:12:40] 
[2024-05-17 14:12:40] 2024-05-17 21:12:21,839 | INFO     | *************************************
[2024-05-17 14:12:40] 2024-05-17 21:12:22,342 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 14:12:40] 2024-05-17 21:12:22,364 | INFO     | sufficient remaining disk space (2099010076672 B)
[2024-05-17 14:12:40] 2024-05-17 21:12:22,364 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 14:12:40] 2024-05-17 21:12:22,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 14:12:40] 2024-05-17 21:12:22,365 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 14:12:40] 2024-05-17 21:12:22,365 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 14:12:40] 2024-05-17 21:12:22,366 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 14:12:40] 2024-05-17 21:12:22,366 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 14:12:40] 2024-05-17 21:12:22,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 14:12:40] 2024-05-17 21:12:22,432 | INFO     | all job control threads have been joined
[2024-05-17 14:12:40] 2024-05-17 21:12:22,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 14:12:40] 2024-05-17 21:12:22,638 | INFO     | aborting loop
[2024-05-17 14:12:40] 2024-05-17 21:12:23,132 | INFO     | all data control threads have been joined
[2024-05-17 14:12:40] 2024-05-17 21:12:23,366 | INFO     | [job] retrieve thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:23,420 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:23,439 | INFO     | [job] control thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:23,546 | INFO     | all payload control threads have been joined
[2024-05-17 14:12:40] 2024-05-17 21:12:23,642 | INFO     | [job] job monitor thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:23,646 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:23,782 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:23,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 14:12:40] 2024-05-17 21:12:24,137 | INFO     | [data] control thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,270 | INFO     | [payload] failed_post thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,371 | INFO     | [data] copytool_out thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,400 | INFO     | [job] validate thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,417 | INFO     | [data] copytool_in thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,551 | INFO     | [payload] control thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,827 | INFO     | [payload] validate_post thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:24,996 | INFO     | [job] queue monitor thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:25,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 14:12:40] 2024-05-17 21:12:29,055 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:33,060 | INFO     | job.realtimelogging is not enabled
[2024-05-17 14:12:40] 2024-05-17 21:12:34,065 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 14:12:40] 2024-05-17 21:12:34,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235076376384)>', '<ExcThread(monitor, started 140234398344960)>']
[2024-05-17 14:12:40] 2024-05-17 21:12:35,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 14:12:40] 2024-05-17 21:12:35,422 | INFO     | [monitor] control thread has ended
[2024-05-17 14:12:40] 2024-05-17 21:12:39,518 | INFO     | all workflow threads have been joined
[2024-05-17 14:12:40] 2024-05-17 21:12:39,518 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 14:12:40] 2024-05-17 21:12:39,519 | INFO     | traces error code: 0
[2024-05-17 14:12:40] 2024-05-17 21:12:39,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 14:12:40] 2024-05-17 21:12:39,652 [wrapper] ==== pilot stdout END ====
[2024-05-17 14:12:40] 2024-05-17 21:12:39,655 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 14:12:40] 2024-05-17 21:12:39,658 [wrapper] pilotpid: 122395
[2024-05-17 14:12:40] 2024-05-17 21:12:39,663 [wrapper] Pilot exit status: 0
[2024-05-17 14:12:40] 2024-05-17 21:12:39,675 [wrapper] pandaids: 6208100249
[2024-05-17 14:12:40] 2024-05-17 21:12:39,740 [wrapper] cleanup: SIGTERM to supervisor_pilot  64990 122396
[2024-05-17 14:12:40] 2024-05-17 21:12:39,743 [wrapper] Test setup, not cleaning
[2024-05-17 14:12:40] 2024-05-17 21:12:39,748 [wrapper] ==== wrapper stdout END ====
[2024-05-17 14:12:40] 2024-05-17 21:12:39,750 [wrapper] ==== wrapper stderr END ====
[2024-05-17 14:12:40] 2024-05-17 21:12:39,753 [wrapper] apfmon messages muted
[2024-05-17 14:12:40]  *** Error codes and diagnostics ***
[2024-05-17 14:12:40]     "exeErrorCode": 0,
[2024-05-17 14:12:40]     "exeErrorDiag": "",
[2024-05-17 14:12:40]     "pilotErrorCode": 0,
[2024-05-17 14:12:40]     "pilotErrorDiag": "",
[2024-05-17 14:12:40]  *** Listing of results directory ***
[2024-05-17 14:12:40] total 810120
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc      5633 May 17 06:35 queuedata.json
[2024-05-17 14:12:40] -rwx------ 1 boinc boinc     32251 May 17 06:37 runpilot2-wrapper.sh
[2024-05-17 14:12:40] -rw------- 1 boinc boinc    468593 May 17 06:37 pilot3.tar.gz
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc       100 May 17 13:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 14:12:40] -rwxr-xr-x 1 boinc boinc      7986 May 17 13:18 run_atlas
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc       105 May 17 13:18 job.xml
[2024-05-17 14:12:40] -rw-r--r-- 2 boinc boinc     17537 May 17 13:18 start_atlas.sh
[2024-05-17 14:12:40] drwxrwx--x 2 boinc boinc      4096 May 17 13:18 shared
[2024-05-17 14:12:40] -rw-r--r-- 2 boinc boinc    481387 May 17 13:18 input.tar.gz
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc      6627 May 17 13:18 init_data.xml
[2024-05-17 14:12:40] -rw-r--r-- 2 boinc boinc 596476590 May 17 13:18 EVNT.38776100._000469.pool.root.1
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc         0 May 17 13:18 boinc_lockfile
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc      2644 May 17 13:18 pandaJob.out
[2024-05-17 14:12:40] -rw------- 1 boinc boinc       424 May 17 13:18 setup.sh.local
[2024-05-17 14:12:40] -rw------- 1 boinc boinc   1019073 May 17 13:18 agis_schedconf.cvmfs.json
[2024-05-17 14:12:40] -rw------- 1 boinc boinc         0 May 17 13:18 agis_ddmendpoints.agis.ALL.json
[2024-05-17 14:12:40] -rw------- 1 boinc boinc   1324701 May 17 13:18 cric_ddmendpoints.json
[2024-05-17 14:12:40] drwx------ 6 boinc boinc      4096 May 17 13:18 pilot3
[2024-05-17 14:12:40] -rw------- 1 boinc boinc 228212275 May 17 14:11 HITS.38776104._013214.pool.root.1
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc       530 May 17 14:11 boinc_task_state.xml
[2024-05-17 14:12:40] -rw------- 1 boinc boinc        95 May 17 14:12 pilot_heartbeat.json
[2024-05-17 14:12:40] -rw------- 1 boinc boinc      1056 May 17 14:12 memory_monitor_summary.json
[2024-05-17 14:12:40] -rw------- 1 boinc boinc    344706 May 17 14:12 log.38776104._013214.job.log.tgz.1
[2024-05-17 14:12:40] -rw------- 1 boinc boinc      7740 May 17 14:12 heartbeat.json
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc      8192 May 17 14:12 boinc_mmap_file
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc        27 May 17 14:12 wrapper_checkpoint.txt
[2024-05-17 14:12:40] -rw------- 1 boinc boinc      4405 May 17 14:12 pilotlog.txt
[2024-05-17 14:12:40] -rw------- 1 boinc boinc    323964 May 17 14:12 log.38776104._013214.job.log.1
[2024-05-17 14:12:40] -rw------- 1 boinc boinc       357 May 17 14:12 output.list
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc       620 May 17 14:12 runtime_log
[2024-05-17 14:12:40] -rw------- 1 boinc boinc    686080 May 17 14:12 result.tar.gz
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc     11286 May 17 14:12 runtime_log.err
[2024-05-17 14:12:40] -rw------- 1 boinc boinc       652 May 17 14:12 8jOLDmSxCS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmP6QKDmRJCFWn.diag
[2024-05-17 14:12:40] -rw-r--r-- 1 boinc boinc     21099 May 17 14:12 stderr.txt
[2024-05-17 14:12:40] HITS file was successfully produced:
[2024-05-17 14:12:40] -rw------- 1 boinc boinc 228212275 May 17 14:11 shared/HITS.pool.root.1
[2024-05-17 14:12:40]  *** Contents of shared directory: ***
[2024-05-17 14:12:40] total 806536
[2024-05-17 14:12:40] -rw-r--r-- 2 boinc boinc     17537 May 17 13:18 start_atlas.sh
[2024-05-17 14:12:40] -rw-r--r-- 2 boinc boinc    481387 May 17 13:18 input.tar.gz
[2024-05-17 14:12:40] -rw-r--r-- 2 boinc boinc 596476590 May 17 13:18 ATLAS.root_0
[2024-05-17 14:12:40] -rw------- 1 boinc boinc 228212275 May 17 14:11 HITS.pool.root.1
[2024-05-17 14:12:40] -rw------- 1 boinc boinc    686080 May 17 14:12 result.tar.gz
14:12:42 (118140): run_atlas exited; CPU time 27144.600530
14:12:42 (118140): called boinc_finish(0)

</stderr_txt>
]]>

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