Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:28:27 (1455914): wrapper (7.7.26015): starting
02:28:27 (1455914): wrapper: running run_atlas (--nthreads 4)
[2024-05-21 02:28:27] Arguments: --nthreads 4
[2024-05-21 02:28:27] Threads: 4
[2024-05-21 02:28:27] Checking for CVMFS
[2024-05-21 02:28:27] No cvmfs_config command found, will try listing directly
[2024-05-21 02:28:27] CVMFS is ok
[2024-05-21 02:28:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-21 02:28:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-21 02:28:27] Further information can be found at the LHC@home message board.
[2024-05-21 02:28:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-21 02:28:27] Checking for apptainer binary...
[2024-05-21 02:28:27] which: no apptainer in ((null))
[2024-05-21 02:28:27] apptainer is not installed, using version from CVMFS
[2024-05-21 02:28:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-21 02:28:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-05-21 02:28:27] apptainer works
[2024-05-21 02:28:27] Set ATHENA_PROC_NUMBER=4
[2024-05-21 02:28:27] Set ATHENA_CORE_NUMBER=4
[2024-05-21 02:28:27] Starting ATLAS job with PandaID=6208070228
[2024-05-21 02:28:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-21 08:24:14]  *** The last 200 lines of the pilot log: ***
[2024-05-21 08:24:14] 2024-05-21 06:21:05,568 | INFO     | fitting pss+swap vs Time
[2024-05-21 08:24:14] 2024-05-21 06:21:05,569 | INFO     | model: linear, x: [1716251337.0, 1716251398.0, 1716251459.0, 1716251520.0, 1716251581.0, 1716251642.0, 1716251703.0, 1716251764.0, 1716251825.0, 1716251886.0, 1716
[2024-05-21 08:24:14] 2024-05-21 06:21:05,569 | INFO     | sum of square deviations: 12955770358.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,573 | INFO     | sum of deviations: 79087092065.99998
[2024-05-21 08:24:14] 2024-05-21 06:21:05,573 | INFO     | mean x: 1716261890.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,573 | INFO     | mean y: 2331984.4236311237
[2024-05-21 08:24:14] 2024-05-21 06:21:05,573 | INFO     | -- intersect: -10474402192.944931
[2024-05-21 08:24:14] 2024-05-21 06:21:05,574 | INFO     | intersect: -10474402192.944931
[2024-05-21 08:24:14] 2024-05-21 06:21:05,574 | INFO     | chi2: 4.269268838402733
[2024-05-21 08:24:14] 2024-05-21 06:21:05,575 | INFO     | model: linear, x: [1716251337.0, 1716251398.0, 1716251459.0, 1716251520.0, 1716251581.0, 1716251642.0, 1716251703.0, 1716251764.0, 1716251825.0, 1716251886.0, 1716
[2024-05-21 08:24:14] 2024-05-21 06:21:05,575 | INFO     | sum of square deviations: 12403750705.5
[2024-05-21 08:24:14] 2024-05-21 06:21:05,578 | INFO     | sum of deviations: 99335805691.00003
[2024-05-21 08:24:14] 2024-05-21 06:21:05,579 | INFO     | mean x: 1716261737.5
[2024-05-21 08:24:14] 2024-05-21 06:21:05,579 | INFO     | mean y: 2337509.2748538014
[2024-05-21 08:24:14] 2024-05-21 06:21:05,579 | INFO     | -- intersect: -13742395557.280737
[2024-05-21 08:24:14] 2024-05-21 06:21:05,579 | INFO     | intersect: -13742395557.280737
[2024-05-21 08:24:14] 2024-05-21 06:21:05,580 | INFO     | chi2: 3.531700032691294
[2024-05-21 08:24:14] 2024-05-21 06:21:05,580 | INFO     | current chi2=3.531700032691294 (change=17.276232386138204 %)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,580 | INFO     | right removable region: 341
[2024-05-21 08:24:14] 2024-05-21 06:21:05,580 | INFO     | model: linear, x: [1716251642.0, 1716251703.0, 1716251764.0, 1716251825.0, 1716251886.0, 1716251947.0, 1716252008.0, 1716252069.0, 1716252130.0, 1716252191.0, 1716
[2024-05-21 08:24:14] 2024-05-21 06:21:05,581 | INFO     | sum of square deviations: 12403750705.5
[2024-05-21 08:24:14] 2024-05-21 06:21:05,584 | INFO     | sum of deviations: 3111159179.499996
[2024-05-21 08:24:14] 2024-05-21 06:21:05,584 | INFO     | mean x: 1716262042.5
[2024-05-21 08:24:14] 2024-05-21 06:21:05,584 | INFO     | mean y: 2352930.289473684
[2024-05-21 08:24:14] 2024-05-21 06:21:05,584 | INFO     | -- intersect: -428126892.687269
[2024-05-21 08:24:14] 2024-05-21 06:21:05,584 | INFO     | intersect: -428126892.687269
[2024-05-21 08:24:14] 2024-05-21 06:21:05,585 | INFO     | chi2: 2.0747296455158173
[2024-05-21 08:24:14] 2024-05-21 06:21:05,585 | INFO     | current chi2=2.0747296455158173 (change=51.40316236697714 %)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,585 | INFO     | model: linear, x: [1716251947.0, 1716252008.0, 1716252069.0, 1716252130.0, 1716252191.0, 1716252252.0, 1716252313.0, 1716252374.0, 1716252435.0, 1716252496.0, 1716
[2024-05-21 08:24:14] 2024-05-21 06:21:05,586 | INFO     | sum of square deviations: 11867638328.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,589 | INFO     | sum of deviations: -54885215857.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,589 | INFO     | mean x: 1716262195.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,589 | INFO     | mean y: 2369427.6053412464
[2024-05-21 08:24:14] 2024-05-21 06:21:05,589 | INFO     | -- intersect: 7939704425.212931
[2024-05-21 08:24:14] 2024-05-21 06:21:05,589 | INFO     | intersect: 7939704425.212931
[2024-05-21 08:24:14] 2024-05-21 06:21:05,590 | INFO     | chi2: 0.9078862817564379
[2024-05-21 08:24:14] 2024-05-21 06:21:05,590 | INFO     | current chi2=0.9078862817564379 (change=56.24074280142075 %)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,590 | INFO     | model: linear, x: [1716252252.0, 1716252313.0, 1716252374.0, 1716252435.0, 1716252496.0, 1716252557.0, 1716252618.0, 1716252679.0, 1716252740.0, 1716252801.0, 1716
[2024-05-21 08:24:14] 2024-05-21 06:21:05,591 | INFO     | sum of square deviations: 11347200663.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,593 | INFO     | sum of deviations: -58194576632.999985
[2024-05-21 08:24:14] 2024-05-21 06:21:05,594 | INFO     | mean x: 1716262347.5
[2024-05-21 08:24:14] 2024-05-21 06:21:05,594 | INFO     | mean y: 2370375.138554217
[2024-05-21 08:24:14] 2024-05-21 06:21:05,594 | INFO     | -- intersect: 8804291101.683231
[2024-05-21 08:24:14] 2024-05-21 06:21:05,594 | INFO     | intersect: 8804291101.683231
[2024-05-21 08:24:14] 2024-05-21 06:21:05,595 | INFO     | chi2: 0.8672562977977268
[2024-05-21 08:24:14] 2024-05-21 06:21:05,595 | INFO     | current chi2=0.8672562977977268 (change=4.475228316051486 %)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,595 | INFO     | left removable region: 30
[2024-05-21 08:24:14] 2024-05-21 06:21:05,595 | INFO     | model: linear, x: [1716253167.0, 1716253228.0, 1716253289.0, 1716253350.0, 1716253411.0, 1716253472.0, 1716253533.0, 1716253594.0, 1716253655.0, 1716253716.0, 1716
[2024-05-21 08:24:14] 2024-05-21 06:21:05,596 | INFO     | sum of square deviations: 9327281860.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,598 | INFO     | sum of deviations: -11862052253.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,599 | INFO     | mean x: 1716262622.0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,599 | INFO     | mean y: 2368766.231511254
[2024-05-21 08:24:14] 2024-05-21 06:21:05,599 | INFO     | -- intersect: 2185040760.882136
[2024-05-21 08:24:14] 2024-05-21 06:21:05,599 | INFO     | intersect: 2185040760.882136
[2024-05-21 08:24:14] 2024-05-21 06:21:05,599 | INFO     | chi2: 0.04331423413152265
[2024-05-21 08:24:14] 2024-05-21 06:21:05,600 | INFO     | -- intersect: 2185040760.882136
[2024-05-21 08:24:14] 2024-05-21 06:21:05,600 | INFO     | current memory leak: -1.27 B/s (using 311 data points, chi2=0.04)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,600 | INFO     | ..............................
[2024-05-21 08:24:14] 2024-05-21 06:21:05,600 | INFO     | . Timing measurements:
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . get job = 0 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . initial setup = 1 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . payload setup = 4 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . stage-in = 0 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . payload execution = 21120 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . stage-out = 0 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | . log creation = 0 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,601 | INFO     | ..............................
[2024-05-21 08:24:14] 2024-05-21 06:21:05,671 | INFO     | 
[2024-05-21 08:24:14] 2024-05-21 06:21:05,671 | INFO     | job summary report
[2024-05-21 08:24:14] 2024-05-21 06:21:05,675 | WARNING  | process 1466930 is no longer using CPU - aborting
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | --------------------------------------------------
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | aborting job monitoring since job object (job id=6208070228) has expired
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | PanDA job id: 6208070228
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | task id: 38920987
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | errors: (none)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | pilot state: finished 
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | transexitcode: 0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,676 | INFO     | exeerrorcode: 0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | exeerrordiag: 
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | exitcode: 0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | exitmsg: OK
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | cpuconsumptiontime: 81590 s
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | nevents: 400
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | neventsw: 0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | pid: 1466930
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | pgrp: 1466930
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | corecount: 4
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | event service: False
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | sizes: {0: 2392137, 3: 2392343, 11: 2392371, 21128: 2426488, 21129: 2435470, 21131: 2435526, 21136: 2435824}
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | --------------------------------------------------
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | 
[2024-05-21 08:24:14] 2024-05-21 06:21:05,677 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-05-21 08:24:14] 2024-05-21 06:21:05,691 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,691 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,693 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,693 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-21 08:24:14] 2024-05-21 06:21:05,693 | INFO     | job 6208070228 has completed (purged errors)
[2024-05-21 08:24:14] 2024-05-21 06:21:05,693 | INFO     | overall cleanup function is called
[2024-05-21 08:24:14] 2024-05-21 06:21:06,699 | INFO     | --- collectZombieJob: --- 10, [1466930]
[2024-05-21 08:24:14] 2024-05-21 06:21:06,699 | INFO     | zombie collector waiting for pid 1466930
[2024-05-21 08:24:14] 2024-05-21 06:21:06,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-21 08:24:14] 2024-05-21 06:21:07,705 | INFO     | collected zombie processes
[2024-05-21 08:24:14] 2024-05-21 06:21:07,705 | INFO     | will now attempt to kill all subprocesses of pid=1466930
[2024-05-21 08:24:14] 2024-05-21 06:21:07,827 | INFO     | process IDs to be killed: [1466930] (in reverse order)
[2024-05-21 08:24:14] 2024-05-21 06:21:07,892 | WARNING  | found no corresponding commands to process id(s)
[2024-05-21 08:24:14] 2024-05-21 06:21:07,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-21 08:24:14] 2024-05-21 06:21:07,897 | INFO     | did not find any defunct processes belonging to 1466930
[2024-05-21 08:24:14] 2024-05-21 06:21:07,901 | INFO     | did not find any defunct processes belonging to 1466930
[2024-05-21 08:24:14] 2024-05-21 06:21:07,902 | INFO     | ready for new job
[2024-05-21 08:24:14] 2024-05-21 06:21:07,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-21 08:24:14] 2024-05-21 06:21:07,903 | INFO     | *************************************
[2024-05-21 08:24:14] 2024-05-21 06:21:07,903 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-21 08:24:14] 2024-05-21 06:21:07,904 | INFO     | *************************************
[2024-05-21 08:24:14] 2024-05-21 06:21:07,904 | INFO     | 
[2024-05-21 08:24:14] 2024-05-21 06:21:07,905 | INFO     | architecture information:
[2024-05-21 08:24:14] 2024-05-21 06:21:07,905 | INFO     | executing command: cat /etc/os-release
[2024-05-21 08:24:14] 2024-05-21 06:21:07,915 | INFO     | cat /etc/os-release:
[2024-05-21 08:24:14] NAME="CentOS Linux"
[2024-05-21 08:24:14] VERSION="7 (Core)"
[2024-05-21 08:24:14] ID="centos"
[2024-05-21 08:24:14] ID_LIKE="rhel fedora"
[2024-05-21 08:24:14] VERSION_ID="7"
[2024-05-21 08:24:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-21 08:24:14] ANSI_COLOR="0;31"
[2024-05-21 08:24:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-21 08:24:14] HOME_URL="https://www.centos.org/"
[2024-05-21 08:24:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-21 08:24:14] 
[2024-05-21 08:24:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-21 08:24:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-21 08:24:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-21 08:24:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-21 08:24:14] 
[2024-05-21 08:24:14] 2024-05-21 06:21:07,915 | INFO     | *************************************
[2024-05-21 08:24:14] 2024-05-21 06:21:08,418 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-05-21 08:24:14] 2024-05-21 06:21:08,436 | INFO     | sufficient remaining disk space (1619024412672 B)
[2024-05-21 08:24:14] 2024-05-21 06:21:08,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-21 08:24:14] 2024-05-21 06:21:08,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-21 08:24:14] 2024-05-21 06:21:08,593 | INFO     | all job control threads have been joined
[2024-05-21 08:24:14] 2024-05-21 06:21:08,656 | INFO     | found 0 job(s) in 20 queues
[2024-05-21 08:24:14] 2024-05-21 06:21:08,656 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-21 08:24:14] 2024-05-21 06:21:08,657 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-21 08:24:14] 2024-05-21 06:21:08,688 | INFO     | all payload control threads have been joined
[2024-05-21 08:24:14] 2024-05-21 06:21:09,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-21 08:24:14] 2024-05-21 06:21:09,184 | INFO     | aborting loop
[2024-05-21 08:24:14] 2024-05-21 06:21:09,410 | INFO     | all data control threads have been joined
[2024-05-21 08:24:14] 2024-05-21 06:21:09,439 | INFO     | [job] retrieve thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:09,505 | INFO     | [data] copytool_in thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:09,511 | INFO     | [payload] execute_payloads thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:09,516 | INFO     | [job] create_data_payload thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:09,597 | INFO     | [job] control thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:09,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-21 08:24:14] 2024-05-21 06:21:09,690 | INFO     | [payload] control thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:10,188 | INFO     | [job] job monitor thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:10,284 | INFO     | [payload] validate_post thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:10,415 | INFO     | [data] control thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:10,482 | INFO     | [job] validate thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:10,547 | INFO     | [payload] validate_pre thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:10,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-21 08:24:14] 2024-05-21 06:21:11,000 | INFO     | [payload] failed_post thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:11,245 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-21 08:24:14] 2024-05-21 06:21:11,637 | INFO     | [data] copytool_out thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:11,687 | INFO     | [job] queue monitor thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:15,250 | INFO     | [data] queue_monitor thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:18,920 | INFO     | job.realtimelogging is not enabled
[2024-05-21 08:24:14] 2024-05-21 06:21:19,925 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-21 08:24:14] 2024-05-21 06:21:20,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47337773478976)>', '<ExcThread(monitor, started 47337951033088)>']
[2024-05-21 08:24:14] 2024-05-21 06:21:21,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-21 08:24:14] 2024-05-21 06:21:21,716 | INFO     | [monitor] control thread has ended
[2024-05-21 08:24:14] 2024-05-21 06:21:25,780 | INFO     | all workflow threads have been joined
[2024-05-21 08:24:14] 2024-05-21 06:21:25,780 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-21 08:24:14] 2024-05-21 06:21:25,780 | INFO     | traces error code: 0
[2024-05-21 08:24:14] 2024-05-21 06:21:25,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-21 08:24:14] 2024-05-21 06:21:25,863 [wrapper] ==== pilot stdout END ====
[2024-05-21 08:24:14] 2024-05-21 06:21:25,865 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-21 08:24:14] 2024-05-21 06:21:25,867 [wrapper] pilotpid: 1460106
[2024-05-21 08:24:14] 2024-05-21 06:21:25,869 [wrapper] Pilot exit status: 0
[2024-05-21 08:24:14] 2024-05-21 06:21:25,879 [wrapper] pandaids: 6208070228
[2024-05-21 08:24:14] 2024-05-21 06:21:25,925 [wrapper] cleanup: SIGTERM to supervisor_pilot 1871190 1460107
[2024-05-21 08:24:14] 2024-05-21 06:21:25,927 [wrapper] Test setup, not cleaning
[2024-05-21 08:24:14] 2024-05-21 06:21:25,929 [wrapper] ==== wrapper stdout END ====
[2024-05-21 08:24:14] 2024-05-21 06:21:25,931 [wrapper] ==== wrapper stderr END ====
[2024-05-21 08:24:14] 2024-05-21 06:21:25,935 [wrapper] apfmon messages muted
[2024-05-21 08:24:14]  *** Error codes and diagnostics ***
[2024-05-21 08:24:14]     "exeErrorCode": 0,
[2024-05-21 08:24:14]     "exeErrorDiag": "",
[2024-05-21 08:24:14]     "pilotErrorCode": 0,
[2024-05-21 08:24:14]     "pilotErrorDiag": "",
[2024-05-21 08:24:14]  *** Listing of results directory ***
[2024-05-21 08:24:14] total 964648
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc    467845 May 17 14:59 pilot3.tar.gz
[2024-05-21 08:24:14] -rwx------ 1 boinc boinc     32251 May 17 15:03 runpilot2-wrapper.sh
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc      5633 May 17 15:03 queuedata.json
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc       100 May 21 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-21 08:24:14] -rwxr-xr-x 1 boinc boinc      7986 May 21 02:28 run_atlas
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc       105 May 21 02:28 job.xml
[2024-05-21 08:24:14] -rw-r--r-- 2 boinc boinc 637875417 May 21 02:28 EVNT.38776170._000163.pool.root.1
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc      6457 May 21 02:28 init_data.xml
[2024-05-21 08:24:14] drwxrwx--x 2 boinc boinc      4096 May 21 02:28 shared
[2024-05-21 08:24:14] -rw-r--r-- 2 boinc boinc    479998 May 21 02:28 input.tar.gz
[2024-05-21 08:24:14] -rw-r--r-- 2 boinc boinc     17537 May 21 02:28 start_atlas.sh
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc         0 May 21 02:28 boinc_lockfile
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc      2616 May 21 02:28 pandaJob.out
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc      1825 May 21 02:28 stderr.txt
[2024-05-21 08:24:14] -rw------- 1 boinc boinc       424 May 21 02:28 setup.sh.local
[2024-05-21 08:24:14] -rw------- 1 boinc boinc   1014347 May 21 02:28 agis_schedconf.cvmfs.json
[2024-05-21 08:24:14] -rw------- 1 boinc boinc   1324701 May 21 02:28 cric_ddmendpoints.json
[2024-05-21 08:24:14] drwx------ 4 boinc boinc      4096 May 21 02:28 pilot3
[2024-05-21 08:24:14] -rw------- 1 boinc boinc 340839299 May 21 08:20 HITS.38920987._004226.pool.root.1
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc       531 May 21 08:20 boinc_task_state.xml
[2024-05-21 08:24:14] -rw------- 1 boinc boinc        95 May 21 08:20 pilot_heartbeat.json
[2024-05-21 08:24:14] -rw------- 1 boinc boinc      1056 May 21 08:20 memory_monitor_summary.json
[2024-05-21 08:24:14] -rw------- 1 boinc boinc         0 May 21 08:20 agis_ddmendpoints.agis.ALL.json
[2024-05-21 08:24:14] -rw------- 1 boinc boinc    413766 May 21 08:20 log.38920987._004226.job.log.tgz.1
[2024-05-21 08:24:14] -rw------- 1 boinc boinc      7780 May 21 08:21 heartbeat.json
[2024-05-21 08:24:14] -rw------- 1 boinc boinc      4294 May 21 08:21 pilotlog.txt
[2024-05-21 08:24:14] -rw------- 1 boinc boinc   2373867 May 21 08:21 log.38920987._004226.job.log.1
[2024-05-21 08:24:14] -rw------- 1 boinc boinc       357 May 21 08:21 output.list
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc       620 May 21 08:21 runtime_log
[2024-05-21 08:24:14] -rw------- 1 boinc boinc   2805760 May 21 08:21 result.tar.gz
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc     11410 May 21 08:21 runtime_log.err
[2024-05-21 08:24:14] -rw------- 1 boinc boinc       659 May 21 08:21 bzqMDmEQCS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm73QKDmfpYsXn.diag
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc        28 May 21 08:23 wrapper_checkpoint.txt
[2024-05-21 08:24:14] -rw-r--r-- 1 boinc boinc      8192 May 21 08:24 boinc_mmap_file
[2024-05-21 08:24:14] HITS file was successfully produced:
[2024-05-21 08:24:14] -rw------- 1 boinc boinc 340839299 May 21 08:20 shared/HITS.pool.root.1
[2024-05-21 08:24:14]  *** Contents of shared directory: ***
[2024-05-21 08:24:14] total 959020
[2024-05-21 08:24:14] -rw-r--r-- 2 boinc boinc 637875417 May 21 02:28 ATLAS.root_0
[2024-05-21 08:24:14] -rw-r--r-- 2 boinc boinc    479998 May 21 02:28 input.tar.gz
[2024-05-21 08:24:14] -rw-r--r-- 2 boinc boinc     17537 May 21 02:28 start_atlas.sh
[2024-05-21 08:24:14] -rw------- 1 boinc boinc 340839299 May 21 08:20 HITS.pool.root.1
[2024-05-21 08:24:14] -rw------- 1 boinc boinc   2805760 May 21 08:21 result.tar.gz
08:24:16 (1455914): run_atlas exited; CPU time 81095.568421
08:24:16 (1455914): called boinc_finish(0)

</stderr_txt>
]]>

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