Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
19:06:00 (29158): wrapper (7.7.26015): starting
19:06:00 (29158): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 19:06:00] Arguments: --nthreads 12
[2024-05-17 19:06:00] Threads: 12
[2024-05-17 19:06:00] Checking for CVMFS
[2024-05-17 19:06:00] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 19:06:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 19:06:00] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 19:06:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 19:06:00] 2.10.1.0 267274 184293 159752 132861 2 60 35965199 45568000 3822 130560 0 589442898 99.731 427396665 11076 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-17 19:06:00] CVMFS is ok
[2024-05-17 19:06:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 19:06:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 19:06:00] Further information can be found at the LHC@home message board.
[2024-05-17 19:06:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 19:06:00] Checking for apptainer binary...
[2024-05-17 19:06:00] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 19:06:00] Running /usr/bin/apptainer --version
[2024-05-17 19:06:00] apptainer version 1.1.8-1.el7
[2024-05-17 19:06:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 19:06:01] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0041.triumf.lcg
[2024-05-17 19:06:01] apptainer works
[2024-05-17 19:06:01] Set ATHENA_PROC_NUMBER=12
[2024-05-17 19:06:01] Set ATHENA_CORE_NUMBER=12
[2024-05-17 19:06:01] Starting ATLAS job with PandaID=6208070108
[2024-05-17 19:06:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 20:43:15]  *** The last 200 lines of the pilot log: ***
[2024-05-17 20:43:15]  direct_access_lan=False
[2024-05-17 20:43:15]  direct_access_wan=False
[2024-05-17 20:43:15]  domain=
[2024-05-17 20:43:15]  filesize=376702
[2024-05-17 20:43:15]  filetype=log
[2024-05-17 20:43:15]  guid=0a232f4e-7718-476e-9513-4e680180fbf0
[2024-05-17 20:43:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 20:43:15]  is_tar=False
[2024-05-17 20:43:15]  lfn=log.38920987._004162.job.log.tgz.1
[2024-05-17 20:43:15]  mtime=0
[2024-05-17 20:43:15]  protocol_id=None
[2024-05-17 20:43:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 20:43:15]  replicas=None
[2024-05-17 20:43:15]  scope=mc23_13p6TeV
[2024-05-17 20:43:15]  status=None
[2024-05-17 20:43:15]  status_code=0
[2024-05-17 20:43:15]  storage_token=
[2024-05-17 20:43:15]  surl=/home/boinc/slots/0/PanDA_Pilot-6208070108/log.38920987._004162.job.log.tgz.1
[2024-05-17 20:43:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/7c/log.38920987._004162.job.log.tgz.1
[2024-05-17 20:43:15]  workdir=None
[2024-05-17 20:43:15] ]
[2024-05-17 20:43:15] 2024-05-18 03:42:46,808 | INFO     | transferring file log.38920987._004162.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208070108/log.38920987._004162.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 20:43:15] 2024-05-18 03:42:46,808 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208070108/log.38920987._004162.job.log.tgz.1 /home/boinc/slots/0/log.38920987._004162.job.log.t
[2024-05-17 20:43:15] 2024-05-18 03:42:46,837 | INFO     | adding to output.list: log.38920987._004162.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/7c/log.38920987._004162.job.log.tg
[2024-05-17 20:43:15] 2024-05-18 03:42:46,838 | INFO     | summary of transferred files:
[2024-05-17 20:43:15] 2024-05-18 03:42:46,838 | INFO     |  -- lfn=log.38920987._004162.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 20:43:15] 2024-05-18 03:42:46,838 | INFO     | stage-out finished correctly
[2024-05-17 20:43:15] 2024-05-18 03:42:47,997 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 20:43:15] 2024-05-18 03:42:48,817 | INFO     | job 6208070108 has state=finished
[2024-05-17 20:43:15] 2024-05-18 03:42:48,817 | INFO     | preparing for final server update for job 6208070108 in state='finished'
[2024-05-17 20:43:15] 2024-05-18 03:42:48,818 | INFO     | this job has now completed (state=finished)
[2024-05-17 20:43:15] 2024-05-18 03:42:48,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 20:43:15] 2024-05-18 03:42:48,818 | INFO     | job 6208070108 has finished - writing final server update
[2024-05-17 20:43:15] 2024-05-18 03:42:48,819 | INFO     | total number of processed events: 400 (read)
[2024-05-17 20:43:15] 2024-05-18 03:42:48,825 | INFO     | executing command: lscpu
[2024-05-17 20:43:15] 2024-05-18 03:42:48,894 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 20:43:15] 2024-05-18 03:42:48,894 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 20:43:15] 2024-05-18 03:42:48,959 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 20:43:15] 2024-05-18 03:42:53,378 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 20:43:15] 2024-05-18 03:42:53,384 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208070108/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 20:43:15] 2024-05-18 03:42:53,387 | INFO     | extracted standard info from prmon json
[2024-05-17 20:43:15] 2024-05-18 03:42:53,387 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 20:43:15] 2024-05-18 03:42:53,388 | WARNING  | GPU info not found in prmon json
[2024-05-17 20:43:15] 2024-05-18 03:42:53,389 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 20:43:15] 2024-05-18 03:42:53,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 20:43:15] 2024-05-18 03:42:53,392 | INFO     | fitting pss+swap vs Time
[2024-05-17 20:43:15] 2024-05-18 03:42:53,393 | INFO     | model: linear, x: [1715998305.0, 1715998366.0, 1715998427.0, 1715998488.0, 1715998549.0, 1715998610.0, 1715998671.0, 1715998732.0, 1715998793.0, 1715998854.0, 1715
[2024-05-17 20:43:15] 2024-05-18 03:42:53,393 | INFO     | sum of square deviations: 211285822.0
[2024-05-17 20:43:15] 2024-05-18 03:42:53,394 | INFO     | sum of deviations: 35869790136.49999
[2024-05-17 20:43:15] 2024-05-18 03:42:53,394 | INFO     | mean x: 1716000958.5
[2024-05-17 20:43:15] 2024-05-18 03:42:53,394 | INFO     | mean y: 2657665.784090909
[2024-05-17 20:43:15] 2024-05-18 03:42:53,394 | INFO     | -- intersect: -291321169332.072
[2024-05-17 20:43:15] 2024-05-18 03:42:53,394 | INFO     | intersect: -291321169332.072
[2024-05-17 20:43:15] 2024-05-18 03:42:53,395 | INFO     | chi2: 2.9642192964461254
[2024-05-17 20:43:15] 2024-05-18 03:42:53,395 | INFO     | -- intersect: -291321169332.072
[2024-05-17 20:43:15] 2024-05-18 03:42:53,395 | INFO     | current memory leak: 169.77 B/s (using 88 data points, chi2=2.96)
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | ..............................
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . Timing measurements:
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . get job = 0 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . initial setup = 2 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . payload setup = 6 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . stage-in = 0 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . payload execution = 5767 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,396 | INFO     | . stage-out = 0 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,397 | INFO     | . log creation = 0 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,397 | INFO     | ..............................
[2024-05-17 20:43:15] 2024-05-18 03:42:53,488 | INFO     | 
[2024-05-17 20:43:15] 2024-05-18 03:42:53,488 | INFO     | job summary report
[2024-05-17 20:43:15] 2024-05-18 03:42:53,488 | INFO     | --------------------------------------------------
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | PanDA job id: 6208070108
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | task id: 38920987
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | errors: (none)
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | pilot state: finished 
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | transexitcode: 0
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | exeerrorcode: 0
[2024-05-17 20:43:15] 2024-05-18 03:42:53,489 | INFO     | exeerrordiag: 
[2024-05-17 20:43:15] 2024-05-18 03:42:53,490 | INFO     | exitcode: 0
[2024-05-17 20:43:15] 2024-05-18 03:42:53,490 | INFO     | exitmsg: OK
[2024-05-17 20:43:15] 2024-05-18 03:42:53,490 | INFO     | cpuconsumptiontime: 57213 s
[2024-05-17 20:43:15] 2024-05-18 03:42:53,490 | INFO     | nevents: 400
[2024-05-17 20:43:15] 2024-05-18 03:42:53,490 | INFO     | neventsw: 0
[2024-05-17 20:43:15] 2024-05-18 03:42:53,490 | INFO     | pid: 39736
[2024-05-17 20:43:15] 2024-05-18 03:42:53,493 | WARNING  | process 39736 is no longer using CPU - aborting
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | pgrp: 39736
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | aborting job monitoring since job object (job id=6208070108) has expired
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | corecount: 12
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | event service: False
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | sizes: {0: 2392124, 5: 2392330, 11: 2392386, 5777: 2419001, 5778: 2427955, 5779: 2428011, 5785: 2428309}
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | --------------------------------------------------
[2024-05-17 20:43:15] 2024-05-18 03:42:53,494 | INFO     | 
[2024-05-17 20:43:15] 2024-05-18 03:42:53,495 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 20:43:15] 2024-05-18 03:42:53,524 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,524 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,524 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,524 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 20:43:15] 2024-05-18 03:42:53,526 | INFO     | job 6208070108 has completed (purged errors)
[2024-05-17 20:43:15] 2024-05-18 03:42:53,527 | INFO     | overall cleanup function is called
[2024-05-17 20:43:15] 2024-05-18 03:42:54,535 | INFO     | --- collectZombieJob: --- 10, [39736]
[2024-05-17 20:43:15] 2024-05-18 03:42:54,536 | INFO     | zombie collector waiting for pid 39736
[2024-05-17 20:43:15] 2024-05-18 03:42:54,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 20:43:15] 2024-05-18 03:42:55,541 | INFO     | collected zombie processes
[2024-05-17 20:43:15] 2024-05-18 03:42:55,542 | INFO     | will now attempt to kill all subprocesses of pid=39736
[2024-05-17 20:43:15] 2024-05-18 03:42:55,663 | INFO     | process IDs to be killed: [39736] (in reverse order)
[2024-05-17 20:43:15] 2024-05-18 03:42:55,778 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 20:43:15] 2024-05-18 03:42:55,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 20:43:15] 2024-05-18 03:42:55,786 | INFO     | did not find any defunct processes belonging to 39736
[2024-05-17 20:43:15] 2024-05-18 03:42:55,793 | INFO     | did not find any defunct processes belonging to 39736
[2024-05-17 20:43:15] 2024-05-18 03:42:55,794 | INFO     | ready for new job
[2024-05-17 20:43:15] 2024-05-18 03:42:55,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 20:43:15] 2024-05-18 03:42:55,796 | INFO     | *************************************
[2024-05-17 20:43:15] 2024-05-18 03:42:55,796 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 20:43:15] 2024-05-18 03:42:55,796 | INFO     | *************************************
[2024-05-17 20:43:15] 2024-05-18 03:42:55,796 | INFO     | 
[2024-05-17 20:43:15] 2024-05-18 03:42:55,801 | INFO     | architecture information:
[2024-05-17 20:43:15] 2024-05-18 03:42:55,801 | INFO     | executing command: cat /etc/os-release
[2024-05-17 20:43:15] 2024-05-18 03:42:55,824 | INFO     | cat /etc/os-release:
[2024-05-17 20:43:15] NAME="CentOS Linux"
[2024-05-17 20:43:15] VERSION="7 (Core)"
[2024-05-17 20:43:15] ID="centos"
[2024-05-17 20:43:15] ID_LIKE="rhel fedora"
[2024-05-17 20:43:15] VERSION_ID="7"
[2024-05-17 20:43:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 20:43:15] ANSI_COLOR="0;31"
[2024-05-17 20:43:15] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 20:43:15] HOME_URL="https://www.centos.org/"
[2024-05-17 20:43:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 20:43:15] 
[2024-05-17 20:43:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 20:43:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 20:43:15] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 20:43:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 20:43:15] 
[2024-05-17 20:43:15] 2024-05-18 03:42:55,824 | INFO     | *************************************
[2024-05-17 20:43:15] 2024-05-18 03:42:56,327 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 20:43:15] 2024-05-18 03:42:56,354 | INFO     | sufficient remaining disk space (2235276722176 B)
[2024-05-17 20:43:15] 2024-05-18 03:42:56,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 20:43:15] 2024-05-18 03:42:56,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 20:43:15] 2024-05-18 03:42:56,355 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 20:43:15] 2024-05-18 03:42:56,356 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 20:43:15] 2024-05-18 03:42:56,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 20:43:15] 2024-05-18 03:42:56,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 20:43:15] 2024-05-18 03:42:56,694 | INFO     | all job control threads have been joined
[2024-05-17 20:43:15] 2024-05-18 03:42:56,806 | INFO     | all payload control threads have been joined
[2024-05-17 20:43:15] 2024-05-18 03:42:57,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 20:43:15] 2024-05-18 03:42:57,003 | INFO     | aborting loop
[2024-05-17 20:43:15] 2024-05-18 03:42:57,287 | INFO     | all data control threads have been joined
[2024-05-17 20:43:15] 2024-05-18 03:42:57,361 | INFO     | [job] retrieve thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:57,382 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:57,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 20:43:15] 2024-05-18 03:42:57,562 | INFO     | [data] copytool_in thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:57,700 | INFO     | [job] control thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:57,812 | INFO     | [payload] control thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,009 | INFO     | [job] job monitor thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,174 | INFO     | [payload] validate_post thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,292 | INFO     | [data] control thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,296 | INFO     | [payload] failed_post thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,299 | INFO     | [job] validate thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,389 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,429 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:58,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 20:43:15] 2024-05-18 03:42:58,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 20:43:15] 2024-05-18 03:42:59,422 | INFO     | [data] copytool_out thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:42:59,507 | INFO     | [job] queue monitor thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:43:02,614 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:43:07,159 | INFO     | job.realtimelogging is not enabled
[2024-05-17 20:43:15] 2024-05-18 03:43:08,166 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 20:43:15] 2024-05-18 03:43:10,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286986880832)>', '<ExcThread(monitor, started 140286424499968)>']
[2024-05-17 20:43:15] 2024-05-18 03:43:10,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 20:43:15] 2024-05-18 03:43:10,433 | INFO     | [monitor] control thread has ended
[2024-05-17 20:43:15] 2024-05-18 03:43:15,182 | INFO     | all workflow threads have been joined
[2024-05-17 20:43:15] 2024-05-18 03:43:15,183 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 20:43:15] 2024-05-18 03:43:15,183 | INFO     | traces error code: 0
[2024-05-17 20:43:15] 2024-05-18 03:43:15,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 20:43:15] 2024-05-18 03:43:15,282 [wrapper] ==== pilot stdout END ====
[2024-05-17 20:43:15] 2024-05-18 03:43:15,286 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 20:43:15] 2024-05-18 03:43:15,290 [wrapper] pilotpid: 33328
[2024-05-17 20:43:15] 2024-05-18 03:43:15,294 [wrapper] Pilot exit status: 0
[2024-05-17 20:43:15] 2024-05-18 03:43:15,307 [wrapper] pandaids: 6208070108
[2024-05-17 20:43:15] 2024-05-18 03:43:15,376 [wrapper] cleanup: SIGTERM to supervisor_pilot  99450 33329
[2024-05-17 20:43:15] 2024-05-18 03:43:15,380 [wrapper] Test setup, not cleaning
[2024-05-17 20:43:15] 2024-05-18 03:43:15,384 [wrapper] ==== wrapper stdout END ====
[2024-05-17 20:43:15] 2024-05-18 03:43:15,389 [wrapper] ==== wrapper stderr END ====
[2024-05-17 20:43:15] 2024-05-18 03:43:15,398 [wrapper] apfmon messages muted
[2024-05-17 20:43:15]  *** Error codes and diagnostics ***
[2024-05-17 20:43:15]     "exeErrorCode": 0,
[2024-05-17 20:43:15]     "exeErrorDiag": "",
[2024-05-17 20:43:15]     "pilotErrorCode": 0,
[2024-05-17 20:43:15]     "pilotErrorDiag": "",
[2024-05-17 20:43:15]  *** Listing of results directory ***
[2024-05-17 20:43:15] total 960560
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc    467845 May 17 05:39 pilot3.tar.gz
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc      5633 May 17 05:48 queuedata.json
[2024-05-17 20:43:15] -rwx------ 1 boinc boinc     32251 May 17 05:48 runpilot2-wrapper.sh
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc       100 May 17 19:05 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 20:43:15] -rwxr-xr-x 1 boinc boinc      7986 May 17 19:05 run_atlas
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc       105 May 17 19:05 job.xml
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc      6627 May 17 19:06 init_data.xml
[2024-05-17 20:43:15] -rw-r--r-- 2 boinc boinc 641401254 May 17 19:06 EVNT.38776170._000160.pool.root.1
[2024-05-17 20:43:15] -rw-r--r-- 2 boinc boinc     17537 May 17 19:06 start_atlas.sh
[2024-05-17 20:43:15] drwxrwx--x 2 boinc boinc      4096 May 17 19:06 shared
[2024-05-17 20:43:15] -rw-r--r-- 2 boinc boinc    479996 May 17 19:06 input.tar.gz
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc         0 May 17 19:06 boinc_lockfile
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc      2616 May 17 19:06 pandaJob.out
[2024-05-17 20:43:15] -rw------- 1 boinc boinc       424 May 17 19:06 setup.sh.local
[2024-05-17 20:43:15] -rw------- 1 boinc boinc   1019073 May 17 19:06 agis_schedconf.cvmfs.json
[2024-05-17 20:43:15] -rw------- 1 boinc boinc         0 May 17 19:06 agis_ddmendpoints.agis.ALL.json
[2024-05-17 20:43:15] -rw------- 1 boinc boinc   1324701 May 17 19:06 cric_ddmendpoints.json
[2024-05-17 20:43:15] drwx------ 4 boinc boinc      4096 May 17 19:06 pilot3
[2024-05-17 20:43:15] -rw------- 1 boinc boinc 336790300 May 17 20:42 HITS.38920987._004162.pool.root.1
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc       530 May 17 20:42 boinc_task_state.xml
[2024-05-17 20:43:15] -rw------- 1 boinc boinc        95 May 17 20:42 pilot_heartbeat.json
[2024-05-17 20:43:15] -rw------- 1 boinc boinc      1044 May 17 20:42 memory_monitor_summary.json
[2024-05-17 20:43:15] -rw------- 1 boinc boinc    376702 May 17 20:42 log.38920987._004162.job.log.tgz.1
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc        27 May 17 20:42 wrapper_checkpoint.txt
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc      8192 May 17 20:42 boinc_mmap_file
[2024-05-17 20:43:15] -rw------- 1 boinc boinc      7757 May 17 20:42 heartbeat.json
[2024-05-17 20:43:15] -rw------- 1 boinc boinc      4405 May 17 20:43 pilotlog.txt
[2024-05-17 20:43:15] -rw------- 1 boinc boinc    565336 May 17 20:43 log.38920987._004162.job.log.1
[2024-05-17 20:43:15] -rw------- 1 boinc boinc       357 May 17 20:43 output.list
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc       620 May 17 20:43 runtime_log
[2024-05-17 20:43:15] -rw------- 1 boinc boinc    962560 May 17 20:43 result.tar.gz
[2024-05-17 20:43:15] -rw------- 1 boinc boinc       651 May 17 20:43 z07NDmFCCS5n7Olcko1bjSoqABFKDmABFKDmOtvXDmFkZKDmzzwVzn.diag
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc     11286 May 17 20:43 runtime_log.err
[2024-05-17 20:43:15] -rw-r--r-- 1 boinc boinc     21334 May 17 20:43 stderr.txt
[2024-05-17 20:43:15] HITS file was successfully produced:
[2024-05-17 20:43:15] -rw------- 1 boinc boinc 336790300 May 17 20:42 shared/HITS.pool.root.1
[2024-05-17 20:43:15]  *** Contents of shared directory: ***
[2024-05-17 20:43:15] total 956712
[2024-05-17 20:43:15] -rw-r--r-- 2 boinc boinc 641401254 May 17 19:06 ATLAS.root_0
[2024-05-17 20:43:15] -rw-r--r-- 2 boinc boinc     17537 May 17 19:06 start_atlas.sh
[2024-05-17 20:43:15] -rw-r--r-- 2 boinc boinc    479996 May 17 19:06 input.tar.gz
[2024-05-17 20:43:15] -rw------- 1 boinc boinc 336790300 May 17 20:42 HITS.pool.root.1
[2024-05-17 20:43:15] -rw------- 1 boinc boinc    962560 May 17 20:43 result.tar.gz
20:43:17 (29158): run_atlas exited; CPU time 57100.349030
20:43:17 (29158): called boinc_finish(0)

</stderr_txt>
]]>

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