Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
14:26:56 (27633): wrapper (7.7.26015): starting
14:26:56 (27633): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 14:26:56] Arguments: --nthreads 12
[2024-05-17 14:26:56] Threads: 12
[2024-05-17 14:26:56] Checking for CVMFS
[2024-05-17 14:26:56] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 14:26:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 14:26:56] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 14:26:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 14:26:57] 2.10.1.0 2809 172759 174988 132855 1 87 41305363 45568001 11879 130560 0 1110390832 99.762 703651123 16585 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 14:26:57] CVMFS is ok
[2024-05-17 14:26:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 14:26:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 14:26:57] Further information can be found at the LHC@home message board.
[2024-05-17 14:26:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 14:26:57] Checking for apptainer binary...
[2024-05-17 14:26:57] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 14:26:57] Running /usr/bin/apptainer --version
[2024-05-17 14:26:57] apptainer version 1.1.8-1.el7
[2024-05-17 14:26:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 14:26:58] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0075.triumf.lcg
[2024-05-17 14:26:58] apptainer works
[2024-05-17 14:26:58] Set ATHENA_PROC_NUMBER=12
[2024-05-17 14:26:58] Set ATHENA_CORE_NUMBER=12
[2024-05-17 14:26:58] Starting ATLAS job with PandaID=6208021255
[2024-05-17 14:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 16:04:41]  *** The last 200 lines of the pilot log: ***
[2024-05-17 16:04:41]  domain=
[2024-05-17 16:04:41]  filesize=369727
[2024-05-17 16:04:41]  filetype=log
[2024-05-17 16:04:41]  guid=7de458eb-00d1-4644-88be-80f5228ac7e2
[2024-05-17 16:04:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 16:04:41]  is_tar=False
[2024-05-17 16:04:41]  lfn=log.38920982._003271.job.log.tgz.1
[2024-05-17 16:04:41]  mtime=0
[2024-05-17 16:04:41]  protocol_id=None
[2024-05-17 16:04:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 16:04:41]  replicas=None
[2024-05-17 16:04:41]  scope=mc23_13p6TeV
[2024-05-17 16:04:41]  status=None
[2024-05-17 16:04:41]  status_code=0
[2024-05-17 16:04:41]  storage_token=
[2024-05-17 16:04:41]  surl=/home/boinc/slots/0/PanDA_Pilot-6208021255/log.38920982._003271.job.log.tgz.1
[2024-05-17 16:04:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/4f/log.38920982._003271.job.log.tgz.1
[2024-05-17 16:04:41]  workdir=None
[2024-05-17 16:04:41] ]
[2024-05-17 16:04:41] 2024-05-17 23:04:16,301 | INFO     | transferring file log.38920982._003271.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208021255/log.38920982._003271.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 16:04:41] 2024-05-17 23:04:16,301 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208021255/log.38920982._003271.job.log.tgz.1 /home/boinc/slots/0/log.38920982._003271.job.log.t
[2024-05-17 16:04:41] 2024-05-17 23:04:16,324 | INFO     | adding to output.list: log.38920982._003271.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/4f/log.38920982._003271.job.log.tg
[2024-05-17 16:04:41] 2024-05-17 23:04:16,325 | INFO     | summary of transferred files:
[2024-05-17 16:04:41] 2024-05-17 23:04:16,325 | INFO     |  -- lfn=log.38920982._003271.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 16:04:41] 2024-05-17 23:04:16,325 | INFO     | stage-out finished correctly
[2024-05-17 16:04:41] 2024-05-17 23:04:18,260 | INFO     | monitor loop #452: job 0:6208021255 is in state 'finished'
[2024-05-17 16:04:41] 2024-05-17 23:04:18,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 16:04:41] 2024-05-17 23:04:19,614 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 16:04:41] 2024-05-17 23:04:20,764 | INFO     | monitor loop #453: job 0:6208021255 is in state 'finished'
[2024-05-17 16:04:41] 2024-05-17 23:04:20,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 16:04:41] 2024-05-17 23:04:21,067 | INFO     | job 6208021255 has state=finished
[2024-05-17 16:04:41] 2024-05-17 23:04:21,067 | INFO     | preparing for final server update for job 6208021255 in state='finished'
[2024-05-17 16:04:41] 2024-05-17 23:04:21,068 | INFO     | this job has now completed (state=finished)
[2024-05-17 16:04:41] 2024-05-17 23:04:21,068 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 16:04:41] 2024-05-17 23:04:21,069 | INFO     | job 6208021255 has finished - writing final server update
[2024-05-17 16:04:41] 2024-05-17 23:04:21,069 | INFO     | total number of processed events: 400 (read)
[2024-05-17 16:04:41] 2024-05-17 23:04:21,075 | INFO     | executing command: lscpu
[2024-05-17 16:04:41] 2024-05-17 23:04:21,135 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 16:04:41] 2024-05-17 23:04:21,136 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 16:04:41] 2024-05-17 23:04:21,193 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 16:04:41] 2024-05-17 23:04:23,267 | INFO     | monitor loop #454: job 0:6208021255 is in state 'finished'
[2024-05-17 16:04:41] 2024-05-17 23:04:23,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 16:04:41] 2024-05-17 23:04:24,564 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 16:04:41] 2024-05-17 23:04:24,565 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208021255/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 16:04:41] 2024-05-17 23:04:24,566 | INFO     | extracted standard info from prmon json
[2024-05-17 16:04:41] 2024-05-17 23:04:24,566 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 16:04:41] 2024-05-17 23:04:24,566 | WARNING  | GPU info not found in prmon json
[2024-05-17 16:04:41] 2024-05-17 23:04:24,567 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 16:04:41] 2024-05-17 23:04:24,567 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 16:04:41] 2024-05-17 23:04:24,569 | INFO     | fitting pss+swap vs Time
[2024-05-17 16:04:41] 2024-05-17 23:04:24,569 | INFO     | model: linear, x: [1715981555.0, 1715981616.0, 1715981677.0, 1715981738.0, 1715981799.0, 1715981860.0, 1715981921.0, 1715981982.0, 1715982043.0, 1715982104.0, 1715
[2024-05-17 16:04:41] 2024-05-17 23:04:24,570 | INFO     | sum of square deviations: 218571540.0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,570 | INFO     | sum of deviations: 21919182948.000004
[2024-05-17 16:04:41] 2024-05-17 23:04:24,570 | INFO     | mean x: 1715984239.0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,570 | INFO     | mean y: 2709635.1235955055
[2024-05-17 16:04:41] 2024-05-17 23:04:24,570 | INFO     | -- intersect: -172082697598.24982
[2024-05-17 16:04:41] 2024-05-17 23:04:24,570 | INFO     | intersect: -172082697598.24982
[2024-05-17 16:04:41] 2024-05-17 23:04:24,571 | INFO     | chi2: 2.5369729679348545
[2024-05-17 16:04:41] 2024-05-17 23:04:24,571 | INFO     | -- intersect: -172082697598.24982
[2024-05-17 16:04:41] 2024-05-17 23:04:24,571 | INFO     | current memory leak: 100.28 B/s (using 89 data points, chi2=2.54)
[2024-05-17 16:04:41] 2024-05-17 23:04:24,571 | INFO     | ..............................
[2024-05-17 16:04:41] 2024-05-17 23:04:24,571 | INFO     | . Timing measurements:
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . get job = 0 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . initial setup = 1 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . payload setup = 4 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . stage-in = 0 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . payload execution = 5804 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . stage-out = 0 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | . log creation = 0 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,572 | INFO     | ..............................
[2024-05-17 16:04:41] 2024-05-17 23:04:24,651 | INFO     | 
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | job summary report
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | --------------------------------------------------
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | PanDA job id: 6208021255
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | task id: 38920982
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | errors: (none)
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | pilot state: finished 
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | transexitcode: 0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | exeerrorcode: 0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | exeerrordiag: 
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | exitcode: 0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | exitmsg: OK
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | cpuconsumptiontime: 55229 s
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | nevents: 400
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | neventsw: 0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | pid: 40368
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | pgrp: 40368
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | corecount: 12
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | event service: False
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | sizes: {0: 2392132, 4: 2392338, 11: 2392366, 5813: 2419066, 5815: 2428020, 5818: 2428076, 5823: 2428374}
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | --------------------------------------------------
[2024-05-17 16:04:41] 2024-05-17 23:04:24,652 | INFO     | 
[2024-05-17 16:04:41] 2024-05-17 23:04:24,653 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 16:04:41] 2024-05-17 23:04:24,675 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,676 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 16:04:41] 2024-05-17 23:04:24,677 | INFO     | job 6208021255 has completed (purged errors)
[2024-05-17 16:04:41] 2024-05-17 23:04:24,677 | INFO     | overall cleanup function is called
[2024-05-17 16:04:41] 2024-05-17 23:04:25,684 | INFO     | --- collectZombieJob: --- 10, [40368]
[2024-05-17 16:04:41] 2024-05-17 23:04:25,684 | INFO     | zombie collector waiting for pid 40368
[2024-05-17 16:04:41] 2024-05-17 23:04:25,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 16:04:41] 2024-05-17 23:04:26,690 | INFO     | collected zombie processes
[2024-05-17 16:04:41] 2024-05-17 23:04:26,690 | INFO     | will now attempt to kill all subprocesses of pid=40368
[2024-05-17 16:04:41] 2024-05-17 23:04:26,868 | INFO     | process IDs to be killed: [40368] (in reverse order)
[2024-05-17 16:04:41] 2024-05-17 23:04:26,979 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 16:04:41] 2024-05-17 23:04:26,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 16:04:41] 2024-05-17 23:04:26,989 | INFO     | did not find any defunct processes belonging to 40368
[2024-05-17 16:04:41] 2024-05-17 23:04:26,997 | INFO     | did not find any defunct processes belonging to 40368
[2024-05-17 16:04:41] 2024-05-17 23:04:26,997 | INFO     | ready for new job
[2024-05-17 16:04:41] 2024-05-17 23:04:26,998 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 16:04:41] 2024-05-17 23:04:26,999 | INFO     | *************************************
[2024-05-17 16:04:41] 2024-05-17 23:04:27,000 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 16:04:41] 2024-05-17 23:04:27,000 | INFO     | *************************************
[2024-05-17 16:04:41] 2024-05-17 23:04:27,000 | INFO     | 
[2024-05-17 16:04:41] 2024-05-17 23:04:27,003 | INFO     | architecture information:
[2024-05-17 16:04:41] 2024-05-17 23:04:27,003 | INFO     | executing command: cat /etc/os-release
[2024-05-17 16:04:41] 2024-05-17 23:04:27,024 | INFO     | cat /etc/os-release:
[2024-05-17 16:04:41] NAME="CentOS Linux"
[2024-05-17 16:04:41] VERSION="7 (Core)"
[2024-05-17 16:04:41] ID="centos"
[2024-05-17 16:04:41] ID_LIKE="rhel fedora"
[2024-05-17 16:04:41] VERSION_ID="7"
[2024-05-17 16:04:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 16:04:41] ANSI_COLOR="0;31"
[2024-05-17 16:04:41] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 16:04:41] HOME_URL="https://www.centos.org/"
[2024-05-17 16:04:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 16:04:41] 
[2024-05-17 16:04:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 16:04:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 16:04:41] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 16:04:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 16:04:41] 
[2024-05-17 16:04:41] 2024-05-17 23:04:27,025 | INFO     | *************************************
[2024-05-17 16:04:41] 2024-05-17 23:04:27,526 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 16:04:41] 2024-05-17 23:04:27,551 | INFO     | sufficient remaining disk space (1951287738368 B)
[2024-05-17 16:04:41] 2024-05-17 23:04:27,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 16:04:41] 2024-05-17 23:04:27,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 16:04:41] 2024-05-17 23:04:27,552 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 16:04:41] 2024-05-17 23:04:27,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 16:04:41] 2024-05-17 23:04:27,552 | INFO     | aborting loop
[2024-05-17 16:04:41] 2024-05-17 23:04:27,554 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 16:04:41] 2024-05-17 23:04:27,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 16:04:41] 2024-05-17 23:04:27,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 16:04:41] 2024-05-17 23:04:27,651 | INFO     | all data control threads have been joined
[2024-05-17 16:04:41] 2024-05-17 23:04:28,406 | INFO     | all job control threads have been joined
[2024-05-17 16:04:41] 2024-05-17 23:04:28,555 | INFO     | all payload control threads have been joined
[2024-05-17 16:04:41] 2024-05-17 23:04:28,556 | INFO     | [job] job monitor thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:28,557 | INFO     | [job] retrieve thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:28,655 | INFO     | [data] control thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:28,724 | INFO     | [job] validate thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:28,726 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,090 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,410 | INFO     | [job] control thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,425 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,431 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,558 | INFO     | [data] copytool_out thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,560 | INFO     | [payload] control thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,662 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 16:04:41] 2024-05-17 23:04:29,842 | INFO     | [data] copytool_in thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:29,860 | INFO     | [payload] failed_post thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:30,051 | INFO     | [payload] validate_post thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:30,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 16:04:41] 2024-05-17 23:04:30,667 | INFO     | [job] queue monitor thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:34,206 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 16:04:41] 2024-05-17 23:04:35,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502784452416)>', '<ExcThread(monitor, started 140502498256640)>']
[2024-05-17 16:04:41] 2024-05-17 23:04:35,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 16:04:41] 2024-05-17 23:04:35,594 | INFO     | [monitor] control thread has ended
[2024-05-17 16:04:41] 2024-05-17 23:04:40,330 | INFO     | all workflow threads have been joined
[2024-05-17 16:04:41] 2024-05-17 23:04:40,330 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 16:04:41] 2024-05-17 23:04:40,330 | INFO     | traces error code: 0
[2024-05-17 16:04:41] 2024-05-17 23:04:40,331 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 16:04:41] 2024-05-17 23:04:40,416 [wrapper] ==== pilot stdout END ====
[2024-05-17 16:04:41] 2024-05-17 23:04:40,418 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 16:04:41] 2024-05-17 23:04:40,420 [wrapper] pilotpid: 31848
[2024-05-17 16:04:41] 2024-05-17 23:04:40,422 [wrapper] Pilot exit status: 0
[2024-05-17 16:04:41] 2024-05-17 23:04:40,432 [wrapper] pandaids: 6208021255
[2024-05-17 16:04:41] 2024-05-17 23:04:40,493 [wrapper] cleanup: SIGTERM to supervisor_pilot 126885 31849
[2024-05-17 16:04:41] 2024-05-17 23:04:40,498 [wrapper] Test setup, not cleaning
[2024-05-17 16:04:41] 2024-05-17 23:04:40,501 [wrapper] ==== wrapper stdout END ====
[2024-05-17 16:04:41] 2024-05-17 23:04:40,503 [wrapper] ==== wrapper stderr END ====
[2024-05-17 16:04:41] 2024-05-17 23:04:40,510 [wrapper] apfmon messages muted
[2024-05-17 16:04:41]  *** Error codes and diagnostics ***
[2024-05-17 16:04:41]     "exeErrorCode": 0,
[2024-05-17 16:04:41]     "exeErrorDiag": "",
[2024-05-17 16:04:41]     "pilotErrorCode": 0,
[2024-05-17 16:04:41]     "pilotErrorDiag": "",
[2024-05-17 16:04:41]  *** Listing of results directory ***
[2024-05-17 16:04:41] total 923788
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc    467845 May 17 04:49 pilot3.tar.gz
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc      5633 May 17 04:57 queuedata.json
[2024-05-17 16:04:41] -rwx------ 1 boinc boinc     32251 May 17 04:58 runpilot2-wrapper.sh
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc       100 May 17 14:26 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 16:04:41] -rwxr-xr-x 1 boinc boinc      7986 May 17 14:26 run_atlas
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc       105 May 17 14:26 job.xml
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc      6626 May 17 14:26 init_data.xml
[2024-05-17 16:04:41] -rw-r--r-- 2 boinc boinc 630171448 May 17 14:26 EVNT.38776160._000130.pool.root.1
[2024-05-17 16:04:41] -rw-r--r-- 2 boinc boinc     17537 May 17 14:26 start_atlas.sh
[2024-05-17 16:04:41] drwxrwx--x 2 boinc boinc      4096 May 17 14:26 shared
[2024-05-17 16:04:41] -rw-r--r-- 2 boinc boinc    480002 May 17 14:26 input.tar.gz
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc         0 May 17 14:26 boinc_lockfile
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc      2625 May 17 14:26 pandaJob.out
[2024-05-17 16:04:41] -rw------- 1 boinc boinc       424 May 17 14:26 setup.sh.local
[2024-05-17 16:04:41] -rw------- 1 boinc boinc   1019089 May 17 14:27 agis_schedconf.cvmfs.json
[2024-05-17 16:04:41] -rw------- 1 boinc boinc         0 May 17 14:27 agis_ddmendpoints.agis.ALL.json
[2024-05-17 16:04:41] -rw------- 1 boinc boinc   1324701 May 17 14:27 cric_ddmendpoints.json
[2024-05-17 16:04:41] drwx------ 4 boinc boinc      4096 May 17 14:27 pilot3
[2024-05-17 16:04:41] -rw------- 1 boinc boinc 310383381 May 17 16:03 HITS.38920982._003271.pool.root.1
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc       530 May 17 16:03 boinc_task_state.xml
[2024-05-17 16:04:41] -rw------- 1 boinc boinc      1066 May 17 16:04 memory_monitor_summary.json
[2024-05-17 16:04:41] -rw------- 1 boinc boinc    369727 May 17 16:04 log.38920982._003271.job.log.tgz.1
[2024-05-17 16:04:41] -rw------- 1 boinc boinc        95 May 17 16:04 pilot_heartbeat.json
[2024-05-17 16:04:41] -rw------- 1 boinc boinc      7789 May 17 16:04 heartbeat.json
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc      8192 May 17 16:04 boinc_mmap_file
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc        27 May 17 16:04 wrapper_checkpoint.txt
[2024-05-17 16:04:41] -rw------- 1 boinc boinc      4210 May 17 16:04 pilotlog.txt
[2024-05-17 16:04:41] -rw------- 1 boinc boinc    561339 May 17 16:04 log.38920982._003271.job.log.1
[2024-05-17 16:04:41] -rw------- 1 boinc boinc       357 May 17 16:04 output.list
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc       620 May 17 16:04 runtime_log
[2024-05-17 16:04:41] -rw------- 1 boinc boinc    952320 May 17 16:04 result.tar.gz
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc     11286 May 17 16:04 runtime_log.err
[2024-05-17 16:04:41] -rw------- 1 boinc boinc       654 May 17 16:04 E3PLDm9OBS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmL0QKDmDJESXm.diag
[2024-05-17 16:04:41] -rw-r--r-- 1 boinc boinc     21541 May 17 16:04 stderr.txt
[2024-05-17 16:04:41] HITS file was successfully produced:
[2024-05-17 16:04:41] -rw------- 1 boinc boinc 310383381 May 17 16:03 shared/HITS.pool.root.1
[2024-05-17 16:04:41]  *** Contents of shared directory: ***
[2024-05-17 16:04:41] total 919948
[2024-05-17 16:04:41] -rw-r--r-- 2 boinc boinc 630171448 May 17 14:26 ATLAS.root_0
[2024-05-17 16:04:41] -rw-r--r-- 2 boinc boinc     17537 May 17 14:26 start_atlas.sh
[2024-05-17 16:04:41] -rw-r--r-- 2 boinc boinc    480002 May 17 14:26 input.tar.gz
[2024-05-17 16:04:41] -rw------- 1 boinc boinc 310383381 May 17 16:03 HITS.pool.root.1
[2024-05-17 16:04:41] -rw------- 1 boinc boinc    952320 May 17 16:04 result.tar.gz
16:04:42 (27633): run_atlas exited; CPU time 54704.568004
16:04:42 (27633): called boinc_finish(0)

</stderr_txt>
]]>

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