Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
14:51:33 (21940): wrapper (7.7.26015): starting
14:51:33 (21940): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 14:51:33] Arguments: --nthreads 12
[2024-05-17 14:51:33] Threads: 12
[2024-05-17 14:51:33] Checking for CVMFS
[2024-05-17 14:51:33] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 14:51:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 14:51:33] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 14:51:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 14:51:33] 2.10.1.0 231954 16818 157692 132855 2 220 24124747 45568000 12039 130560 0 64613022 99.866 27372644 25814 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-17 14:51:33] CVMFS is ok
[2024-05-17 14:51:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 14:51:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 14:51:33] Further information can be found at the LHC@home message board.
[2024-05-17 14:51:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 14:51:33] Checking for apptainer binary...
[2024-05-17 14:51:33] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 14:51:33] Running /usr/bin/apptainer --version
[2024-05-17 14:51:34] apptainer version 1.1.8-1.el7
[2024-05-17 14:51:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 14:51:35] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0105.triumf.lcg
[2024-05-17 14:51:35] apptainer works
[2024-05-17 14:51:35] Set ATHENA_PROC_NUMBER=12
[2024-05-17 14:51:35] Set ATHENA_CORE_NUMBER=12
[2024-05-17 14:51:35] Starting ATLAS job with PandaID=6208019785
[2024-05-17 14:51:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 16:45:41]  *** The last 200 lines of the pilot log: ***
[2024-05-17 16:45:41] 2024-05-17 23:45:22,587 | INFO     | intersect: -106131840466.06741
[2024-05-17 16:45:41] 2024-05-17 23:45:22,587 | INFO     | chi2: 0.6623382378386762
[2024-05-17 16:45:41] 2024-05-17 23:45:22,587 | INFO     | current chi2=0.6623382378386762 (change=65.38282657549675 %)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,587 | INFO     | model: linear, x: [1715983657.0, 1715983718.0, 1715983779.0, 1715983840.0, 1715983901.0, 1715983962.0, 1715984023.0, 1715984084.0, 1715984145.0, 1715984206.0, 1715
[2024-05-17 16:45:41] 2024-05-17 23:45:22,588 | INFO     | sum of square deviations: 274312120.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,588 | INFO     | sum of deviations: 6124666112.500001
[2024-05-17 16:45:41] 2024-05-17 23:45:22,588 | INFO     | mean x: 1715986554.5
[2024-05-17 16:45:41] 2024-05-17 23:45:22,588 | INFO     | mean y: 2741679.8854166665
[2024-05-17 16:45:41] 2024-05-17 23:45:22,588 | INFO     | -- intersect: -38310711986.87851
[2024-05-17 16:45:41] 2024-05-17 23:45:22,588 | INFO     | intersect: -38310711986.87851
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | chi2: 0.033164106617766004
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | current chi2=0.033164106617766004 (change=94.99287452797739 %)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | model: linear, x: [1715983962.0, 1715984023.0, 1715984084.0, 1715984145.0, 1715984206.0, 1715984267.0, 1715984328.0, 1715984389.0, 1715984450.0, 1715984511.0, 1715
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | sum of square deviations: 233641590.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | sum of deviations: 2644607359.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | mean x: 1715986707.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,589 | INFO     | mean y: 2754602.4835164836
[2024-05-17 16:45:41] 2024-05-17 23:45:22,590 | INFO     | -- intersect: -19420632617.5674
[2024-05-17 16:45:41] 2024-05-17 23:45:22,590 | INFO     | intersect: -19420632617.5674
[2024-05-17 16:45:41] 2024-05-17 23:45:22,590 | INFO     | chi2: 0.0012527596478930226
[2024-05-17 16:45:41] 2024-05-17 23:45:22,590 | INFO     | current chi2=0.0012527596478930226 (change=96.22254366043462 %)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,590 | INFO     | model: linear, x: [1715984267.0, 1715984328.0, 1715984389.0, 1715984450.0, 1715984511.0, 1715984572.0, 1715984633.0, 1715984694.0, 1715984755.0, 1715984816.0, 1715
[2024-05-17 16:45:41] 2024-05-17 23:45:22,590 | INFO     | sum of square deviations: 197203697.5
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | sum of deviations: 1786268703.4999998
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | mean x: 1715986859.5
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | mean y: 2758178.197674419
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | -- intersect: -15540630011.783407
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | intersect: -15540630011.783407
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | chi2: 0.00023946137127607477
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | current chi2=0.00023946137127607477 (change=80.8852901928301 %)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | model: linear, x: [1715984572.0, 1715984633.0, 1715984694.0, 1715984755.0, 1715984816.0, 1715984877.0, 1715984938.0, 1715984999.0, 1715985060.0, 1715985121.0, 1715
[2024-05-17 16:45:41] 2024-05-17 23:45:22,591 | INFO     | sum of square deviations: 164765880.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | sum of deviations: 1324796231.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | mean x: 1715987012.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | mean y: 2760348.234567901
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | -- intersect: -13794593363.241083
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | intersect: -13794593363.241083
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | chi2: 0.0001015011258103905
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | current chi2=0.0001015011258103905 (change=57.61273508562266 %)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | model: linear, x: [1715984877.0, 1715984938.0, 1715984999.0, 1715985060.0, 1715985121.0, 1715985182.0, 1715985243.0, 1715985304.0, 1715985365.0, 1715985426.0, 1715
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | sum of square deviations: 136095575.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,592 | INFO     | sum of deviations: 1036971604.5000001
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | mean x: 1715987164.5
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | mean y: 2761879.5657894737
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | -- intersect: -13072093517.260818
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | intersect: -13072093517.260818
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | chi2: 8.313019006896028e-05
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | current chi2=8.313019006896028e-05 (change=18.09924332834307 %)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | left removable region: 70
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | model: linear, x: [1715987012.0, 1715987073.0, 1715987134.0, 1715987195.0, 1715987256.0, 1715987317.0, 1715987378.0, 1715987439.0, 1715987500.0, 1715987561.0, 1715
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | sum of square deviations: 13283970.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | sum of deviations: 87085064.00000001
[2024-05-17 16:45:41] 2024-05-17 23:45:22,593 | INFO     | mean x: 1715988049.0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | mean y: 2768199.942857143
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | -- intersect: -11246649637.525923
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | intersect: -11246649637.525923
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | chi2: 1.2150537536336064e-05
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | -- intersect: -11246649637.525923
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | current memory leak: 6.56 B/s (using 35 data points, chi2=0.00)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | ..............................
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | . Timing measurements:
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | . get job = 0 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | . initial setup = 2 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,594 | INFO     | . payload setup = 7 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,595 | INFO     | . stage-in = 0 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,595 | INFO     | . payload execution = 6765 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,595 | INFO     | . stage-out = 1 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,595 | INFO     | . log creation = 0 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,595 | INFO     | ..............................
[2024-05-17 16:45:41] 2024-05-17 23:45:22,927 | INFO     | 
[2024-05-17 16:45:41] 2024-05-17 23:45:22,927 | INFO     | job summary report
[2024-05-17 16:45:41] 2024-05-17 23:45:22,927 | INFO     | --------------------------------------------------
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | PanDA job id: 6208019785
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | task id: 38920982
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | errors: (none)
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | pilot state: finished 
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | transexitcode: 0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | exeerrorcode: 0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | exeerrordiag: 
[2024-05-17 16:45:41] 2024-05-17 23:45:22,928 | INFO     | exitcode: 0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | exitmsg: OK
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | cpuconsumptiontime: 67084 s
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | nevents: 400
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | neventsw: 0
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | pid: 34689
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | pgrp: 34689
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | corecount: 12
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | event service: False
[2024-05-17 16:45:41] 2024-05-17 23:45:22,929 | INFO     | sizes: {0: 2392005, 1: 2392204, 9: 2392410, 11: 2392438, 6776: 2419439, 6778: 2428393, 6780: 2428577, 6796: 2428747}
[2024-05-17 16:45:41] 2024-05-17 23:45:22,930 | INFO     | --------------------------------------------------
[2024-05-17 16:45:41] 2024-05-17 23:45:22,930 | INFO     | 
[2024-05-17 16:45:41] 2024-05-17 23:45:22,930 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 16:45:41] 2024-05-17 23:45:23,102 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,103 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,103 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,103 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,105 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 16:45:41] 2024-05-17 23:45:23,106 | INFO     | job 6208019785 has completed (purged errors)
[2024-05-17 16:45:41] 2024-05-17 23:45:23,106 | INFO     | overall cleanup function is called
[2024-05-17 16:45:41] 2024-05-17 23:45:24,114 | INFO     | --- collectZombieJob: --- 10, [34689]
[2024-05-17 16:45:41] 2024-05-17 23:45:24,114 | INFO     | zombie collector waiting for pid 34689
[2024-05-17 16:45:41] 2024-05-17 23:45:24,114 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 16:45:41] 2024-05-17 23:45:25,116 | INFO     | collected zombie processes
[2024-05-17 16:45:41] 2024-05-17 23:45:25,117 | INFO     | will now attempt to kill all subprocesses of pid=34689
[2024-05-17 16:45:41] 2024-05-17 23:45:26,704 | INFO     | process IDs to be killed: [34689] (in reverse order)
[2024-05-17 16:45:41] 2024-05-17 23:45:26,816 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 16:45:41] 2024-05-17 23:45:26,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 16:45:41] 2024-05-17 23:45:26,828 | INFO     | did not find any defunct processes belonging to 34689
[2024-05-17 16:45:41] 2024-05-17 23:45:26,835 | INFO     | did not find any defunct processes belonging to 34689
[2024-05-17 16:45:41] 2024-05-17 23:45:26,835 | INFO     | ready for new job
[2024-05-17 16:45:41] 2024-05-17 23:45:26,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 16:45:41] 2024-05-17 23:45:26,837 | INFO     | *************************************
[2024-05-17 16:45:41] 2024-05-17 23:45:26,837 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 16:45:41] 2024-05-17 23:45:26,837 | INFO     | *************************************
[2024-05-17 16:45:41] 2024-05-17 23:45:26,837 | INFO     | 
[2024-05-17 16:45:41] 2024-05-17 23:45:26,840 | INFO     | architecture information:
[2024-05-17 16:45:41] 2024-05-17 23:45:26,840 | INFO     | executing command: cat /etc/os-release
[2024-05-17 16:45:41] 2024-05-17 23:45:26,863 | INFO     | cat /etc/os-release:
[2024-05-17 16:45:41] NAME="CentOS Linux"
[2024-05-17 16:45:41] VERSION="7 (Core)"
[2024-05-17 16:45:41] ID="centos"
[2024-05-17 16:45:41] ID_LIKE="rhel fedora"
[2024-05-17 16:45:41] VERSION_ID="7"
[2024-05-17 16:45:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 16:45:41] ANSI_COLOR="0;31"
[2024-05-17 16:45:41] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 16:45:41] HOME_URL="https://www.centos.org/"
[2024-05-17 16:45:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 16:45:41] 
[2024-05-17 16:45:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 16:45:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 16:45:41] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 16:45:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 16:45:41] 
[2024-05-17 16:45:41] 2024-05-17 23:45:26,864 | INFO     | *************************************
[2024-05-17 16:45:41] 2024-05-17 23:45:27,367 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 16:45:41] 2024-05-17 23:45:27,393 | INFO     | sufficient remaining disk space (2136795512832 B)
[2024-05-17 16:45:41] 2024-05-17 23:45:27,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 16:45:41] 2024-05-17 23:45:27,394 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 16:45:41] 2024-05-17 23:45:27,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 16:45:41] 2024-05-17 23:45:27,395 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 16:45:41] 2024-05-17 23:45:27,395 | INFO     | aborting loop
[2024-05-17 16:45:41] 2024-05-17 23:45:27,396 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 16:45:41] 2024-05-17 23:45:27,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 16:45:41] 2024-05-17 23:45:27,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 16:45:41] 2024-05-17 23:45:27,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 16:45:41] 2024-05-17 23:45:27,671 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 16:45:41] 2024-05-17 23:45:27,717 | INFO     | all data control threads have been joined
[2024-05-17 16:45:41] 2024-05-17 23:45:28,125 | INFO     | all payload control threads have been joined
[2024-05-17 16:45:41] 2024-05-17 23:45:28,399 | INFO     | [job] retrieve thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:28,402 | INFO     | [job] job monitor thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:28,676 | INFO     | [job] queue monitor thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:28,717 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:28,723 | INFO     | [data] control thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:28,732 | INFO     | all job control threads have been joined
[2024-05-17 16:45:41] 2024-05-17 23:45:29,056 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,118 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,130 | INFO     | [payload] control thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,301 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,401 | INFO     | [data] copytool_in thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,479 | INFO     | [payload] validate_post thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,514 | INFO     | [data] copytool_out thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,534 | INFO     | [payload] failed_post thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,738 | INFO     | [job] control thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:29,852 | INFO     | [job] validate thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:30,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 16:45:41] 2024-05-17 23:45:34,435 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 16:45:41] 2024-05-17 23:45:35,085 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139884961281856)>', '<ExcThread(monitor, started 139884400473856)>']
[2024-05-17 16:45:41] 2024-05-17 23:45:35,437 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 16:45:41] 2024-05-17 23:45:35,437 | INFO     | [monitor] control thread has ended
[2024-05-17 16:45:41] 2024-05-17 23:45:40,111 | INFO     | all workflow threads have been joined
[2024-05-17 16:45:41] 2024-05-17 23:45:40,111 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 16:45:41] 2024-05-17 23:45:40,111 | INFO     | traces error code: 0
[2024-05-17 16:45:41] 2024-05-17 23:45:40,112 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 16:45:41] 2024-05-17 23:45:40,315 [wrapper] ==== pilot stdout END ====
[2024-05-17 16:45:41] 2024-05-17 23:45:40,401 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 16:45:41] 2024-05-17 23:45:40,408 [wrapper] pilotpid: 26192
[2024-05-17 16:45:41] 2024-05-17 23:45:40,418 [wrapper] Pilot exit status: 0
[2024-05-17 16:45:41] 2024-05-17 23:45:40,438 [wrapper] pandaids: 6208019785
[2024-05-17 16:45:41] 2024-05-17 23:45:40,513 [wrapper] cleanup: SIGTERM to supervisor_pilot 230196 26193
[2024-05-17 16:45:41] 2024-05-17 23:45:40,519 [wrapper] Test setup, not cleaning
[2024-05-17 16:45:41] 2024-05-17 23:45:40,525 [wrapper] ==== wrapper stdout END ====
[2024-05-17 16:45:41] 2024-05-17 23:45:40,529 [wrapper] ==== wrapper stderr END ====
[2024-05-17 16:45:41] 2024-05-17 23:45:40,540 [wrapper] apfmon messages muted
[2024-05-17 16:45:41]  *** Error codes and diagnostics ***
[2024-05-17 16:45:41]     "exeErrorCode": 0,
[2024-05-17 16:45:41]     "exeErrorDiag": "",
[2024-05-17 16:45:41]     "pilotErrorCode": 0,
[2024-05-17 16:45:41]     "pilotErrorDiag": "",
[2024-05-17 16:45:41]  *** Listing of results directory ***
[2024-05-17 16:45:41] total 926528
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc    467845 May 17 04:37 pilot3.tar.gz
[2024-05-17 16:45:41] -rwx------ 1 boinc boinc     32251 May 17 04:43 runpilot2-wrapper.sh
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc      5633 May 17 04:43 queuedata.json
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc       100 May 17 14:51 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 16:45:41] -rwxr-xr-x 1 boinc boinc      7986 May 17 14:51 run_atlas
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc       105 May 17 14:51 job.xml
[2024-05-17 16:45:41] -rw-r--r-- 2 boinc boinc 631748734 May 17 14:51 EVNT.38776160._000070.pool.root.1
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc      6621 May 17 14:51 init_data.xml
[2024-05-17 16:45:41] -rw-r--r-- 2 boinc boinc     17537 May 17 14:51 start_atlas.sh
[2024-05-17 16:45:41] drwxrwx--x 2 boinc boinc      4096 May 17 14:51 shared
[2024-05-17 16:45:41] -rw-r--r-- 2 boinc boinc    480009 May 17 14:51 input.tar.gz
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc         0 May 17 14:51 boinc_lockfile
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc      2622 May 17 14:51 pandaJob.out
[2024-05-17 16:45:41] -rw------- 1 boinc boinc       424 May 17 14:51 setup.sh.local
[2024-05-17 16:45:41] -rw------- 1 boinc boinc   1019089 May 17 14:51 agis_schedconf.cvmfs.json
[2024-05-17 16:45:41] -rw------- 1 boinc boinc         0 May 17 14:51 agis_ddmendpoints.agis.ALL.json
[2024-05-17 16:45:41] -rw------- 1 boinc boinc   1324701 May 17 14:51 cric_ddmendpoints.json
[2024-05-17 16:45:41] drwx------ 4 boinc boinc      4096 May 17 14:51 pilot3
[2024-05-17 16:45:41] -rw------- 1 boinc boinc 311410377 May 17 16:44 HITS.38920982._003201.pool.root.1
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc       530 May 17 16:44 boinc_task_state.xml
[2024-05-17 16:45:41] -rw------- 1 boinc boinc      1075 May 17 16:44 memory_monitor_summary.json
[2024-05-17 16:45:41] -rw------- 1 boinc boinc        95 May 17 16:45 pilot_heartbeat.json
[2024-05-17 16:45:41] -rw------- 1 boinc boinc    372198 May 17 16:45 log.38920982._003201.job.log.tgz.1
[2024-05-17 16:45:41] -rw------- 1 boinc boinc      7764 May 17 16:45 heartbeat.json
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc      8192 May 17 16:45 boinc_mmap_file
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc        27 May 17 16:45 wrapper_checkpoint.txt
[2024-05-17 16:45:41] -rw------- 1 boinc boinc      4333 May 17 16:45 pilotlog.txt
[2024-05-17 16:45:41] -rw------- 1 boinc boinc    666851 May 17 16:45 log.38920982._003201.job.log.1
[2024-05-17 16:45:41] -rw------- 1 boinc boinc       357 May 17 16:45 output.list
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc       620 May 17 16:45 runtime_log
[2024-05-17 16:45:41] -rw------- 1 boinc boinc   1054720 May 17 16:45 result.tar.gz
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc     11286 May 17 16:45 runtime_log.err
[2024-05-17 16:45:41] -rw------- 1 boinc boinc       653 May 17 16:45 c8eMDm3ABS5nsSi4apGgGQJmABFKDmABFKDm4ySLDmSzQKDmdPCYbm.diag
[2024-05-17 16:45:41] -rw-r--r-- 1 boinc boinc     21925 May 17 16:45 stderr.txt
[2024-05-17 16:45:41] HITS file was successfully produced:
[2024-05-17 16:45:41] -rw------- 1 boinc boinc 311410377 May 17 16:44 shared/HITS.pool.root.1
[2024-05-17 16:45:41]  *** Contents of shared directory: ***
[2024-05-17 16:45:41] total 922588
[2024-05-17 16:45:41] -rw-r--r-- 2 boinc boinc 631748734 May 17 14:51 ATLAS.root_0
[2024-05-17 16:45:41] -rw-r--r-- 2 boinc boinc     17537 May 17 14:51 start_atlas.sh
[2024-05-17 16:45:41] -rw-r--r-- 2 boinc boinc    480009 May 17 14:51 input.tar.gz
[2024-05-17 16:45:41] -rw------- 1 boinc boinc 311410377 May 17 16:44 HITS.pool.root.1
[2024-05-17 16:45:41] -rw------- 1 boinc boinc   1054720 May 17 16:45 result.tar.gz
16:45:42 (21940): run_atlas exited; CPU time 66916.868104
16:45:42 (21940): called boinc_finish(0)

</stderr_txt>
]]>

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