Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
16:35:13 (33953): wrapper (7.7.26015): starting
16:35:13 (33953): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 16:35:13] Arguments: --nthreads 12
[2024-05-17 16:35:13] Threads: 12
[2024-05-17 16:35:13] Checking for CVMFS
[2024-05-17 16:35:13] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 16:35:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 16:35:14] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 16:35:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 16:35:14] 2.10.1.0 183950 184141 194600 132859 2 98 30612093 45568001 10912 130560 0 1192095751 99.758 742244884 17646 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2024-05-17 16:35:14] CVMFS is ok
[2024-05-17 16:35:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 16:35:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 16:35:14] Further information can be found at the LHC@home message board.
[2024-05-17 16:35:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 16:35:14] Checking for apptainer binary...
[2024-05-17 16:35:14] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 16:35:14] Running /usr/bin/apptainer --version
[2024-05-17 16:35:14] apptainer version 1.1.8-1.el7
[2024-05-17 16:35:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 16:35:15] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0065.triumf.lcg
[2024-05-17 16:35:15] apptainer works
[2024-05-17 16:35:15] Set ATHENA_PROC_NUMBER=12
[2024-05-17 16:35:15] Set ATHENA_CORE_NUMBER=12
[2024-05-17 16:35:15] Starting ATLAS job with PandaID=6208019745
[2024-05-17 16:35:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 18:06:14]  *** The last 200 lines of the pilot log: ***
[2024-05-17 18:06:14]  guid=15e63ce7-bba9-4acb-8355-a37bfb535903
[2024-05-17 18:06:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 18:06:14]  is_tar=False
[2024-05-17 18:06:14]  lfn=log.38920982._003183.job.log.tgz.1
[2024-05-17 18:06:14]  mtime=0
[2024-05-17 18:06:14]  protocol_id=None
[2024-05-17 18:06:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 18:06:14]  replicas=None
[2024-05-17 18:06:14]  scope=mc23_13p6TeV
[2024-05-17 18:06:14]  status=None
[2024-05-17 18:06:14]  status_code=0
[2024-05-17 18:06:14]  storage_token=
[2024-05-17 18:06:14]  surl=/home/boinc/slots/0/PanDA_Pilot-6208019745/log.38920982._003183.job.log.tgz.1
[2024-05-17 18:06:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/a8/log.38920982._003183.job.log.tgz.1
[2024-05-17 18:06:14]  workdir=None
[2024-05-17 18:06:14] ]
[2024-05-17 18:06:14] 2024-05-18 01:05:51,015 | INFO     | transferring file log.38920982._003183.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6208019745/log.38920982._003183.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 18:06:14] 2024-05-18 01:05:51,016 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6208019745/log.38920982._003183.job.log.tgz.1 /home/boinc/slots/0/log.38920982._003183.job.log.t
[2024-05-17 18:06:14] 2024-05-18 01:05:51,038 | INFO     | adding to output.list: log.38920982._003183.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/a8/log.38920982._003183.job.log.tg
[2024-05-17 18:06:14] 2024-05-18 01:05:51,038 | INFO     | summary of transferred files:
[2024-05-17 18:06:14] 2024-05-18 01:05:51,038 | INFO     |  -- lfn=log.38920982._003183.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 18:06:14] 2024-05-18 01:05:51,038 | INFO     | stage-out finished correctly
[2024-05-17 18:06:14] 2024-05-18 01:05:52,657 | INFO     | monitor loop #424: job 0:6208019745 is in state 'finished'
[2024-05-17 18:06:14] 2024-05-18 01:05:52,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 18:06:14] 2024-05-18 01:05:53,770 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 18:06:14] 2024-05-18 01:05:55,060 | INFO     | job 6208019745 has state=finished
[2024-05-17 18:06:14] 2024-05-18 01:05:55,060 | INFO     | preparing for final server update for job 6208019745 in state='finished'
[2024-05-17 18:06:14] 2024-05-18 01:05:55,061 | INFO     | this job has now completed (state=finished)
[2024-05-17 18:06:14] 2024-05-18 01:05:55,061 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 18:06:14] 2024-05-18 01:05:55,061 | INFO     | job 6208019745 has finished - writing final server update
[2024-05-17 18:06:14] 2024-05-18 01:05:55,061 | INFO     | total number of processed events: 400 (read)
[2024-05-17 18:06:14] 2024-05-18 01:05:55,065 | INFO     | executing command: lscpu
[2024-05-17 18:06:14] 2024-05-18 01:05:55,118 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 18:06:14] 2024-05-18 01:05:55,118 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 18:06:14] 2024-05-18 01:05:55,160 | INFO     | monitor loop #425: job 0:6208019745 is in state 'finished'
[2024-05-17 18:06:14] 2024-05-18 01:05:55,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 18:06:14] 2024-05-18 01:05:55,162 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 18:06:14] 2024-05-18 01:05:57,664 | INFO     | monitor loop #426: job 0:6208019745 is in state 'finished'
[2024-05-17 18:06:14] 2024-05-18 01:05:57,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 18:06:14] 2024-05-18 01:05:58,780 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 18:06:14] 2024-05-18 01:05:58,781 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6208019745/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 18:06:14] 2024-05-18 01:05:58,782 | INFO     | extracted standard info from prmon json
[2024-05-17 18:06:14] 2024-05-18 01:05:58,783 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 18:06:14] 2024-05-18 01:05:58,783 | WARNING  | GPU info not found in prmon json
[2024-05-17 18:06:14] 2024-05-18 01:05:58,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 18:06:14] 2024-05-18 01:05:58,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 18:06:14] 2024-05-18 01:05:58,787 | INFO     | fitting pss+swap vs Time
[2024-05-17 18:06:14] 2024-05-18 01:05:58,787 | INFO     | model: linear, x: [1715989254.0, 1715989315.0, 1715989376.0, 1715989437.0, 1715989498.0, 1715989559.0, 1715989620.0, 1715989681.0, 1715989742.0, 1715989803.0, 1715
[2024-05-17 18:06:14] 2024-05-18 01:05:58,787 | INFO     | sum of square deviations: 170944600.5
[2024-05-17 18:06:14] 2024-05-18 01:05:58,788 | INFO     | sum of deviations: 22305466759.499992
[2024-05-17 18:06:14] 2024-05-18 01:05:58,788 | INFO     | mean x: 1715991724.5
[2024-05-17 18:06:14] 2024-05-18 01:05:58,788 | INFO     | mean y: 2698783.475609756
[2024-05-17 18:06:14] 2024-05-18 01:05:58,788 | INFO     | -- intersect: -223906077852.09772
[2024-05-17 18:06:14] 2024-05-18 01:05:58,789 | INFO     | intersect: -223906077852.09772
[2024-05-17 18:06:14] 2024-05-18 01:05:58,789 | INFO     | chi2: 2.495618390289626
[2024-05-17 18:06:14] 2024-05-18 01:05:58,789 | INFO     | -- intersect: -223906077852.09772
[2024-05-17 18:06:14] 2024-05-18 01:05:58,789 | INFO     | current memory leak: 130.48 B/s (using 82 data points, chi2=2.50)
[2024-05-17 18:06:14] 2024-05-18 01:05:58,790 | INFO     | ..............................
[2024-05-17 18:06:14] 2024-05-18 01:05:58,790 | INFO     | . Timing measurements:
[2024-05-17 18:06:14] 2024-05-18 01:05:58,790 | INFO     | . get job = 0 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,790 | INFO     | . initial setup = 2 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,790 | INFO     | . payload setup = 5 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,790 | INFO     | . stage-in = 0 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,791 | INFO     | . payload execution = 5401 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,791 | INFO     | . stage-out = 0 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,791 | INFO     | . log creation = 0 s
[2024-05-17 18:06:14] 2024-05-18 01:05:58,791 | INFO     | ..............................
[2024-05-17 18:06:14] 2024-05-18 01:05:59,191 | INFO     | 
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | job summary report
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | --------------------------------------------------
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | PanDA job id: 6208019745
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | task id: 38920982
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | errors: (none)
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 18:06:14] 2024-05-18 01:05:59,192 | INFO     | pilot state: finished 
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | transexitcode: 0
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | exeerrorcode: 0
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | exeerrordiag: 
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | exitcode: 0
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | exitmsg: OK
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | cpuconsumptiontime: 51964 s
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | nevents: 400
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | neventsw: 0
[2024-05-17 18:06:14] 2024-05-18 01:05:59,193 | INFO     | pid: 44702
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | pgrp: 44702
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | corecount: 12
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | event service: False
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | sizes: {0: 2392182, 4: 2392388, 11: 2392416, 5409: 2418920, 5410: 2427874, 5413: 2427930, 5418: 2428228}
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | --------------------------------------------------
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | 
[2024-05-17 18:06:14] 2024-05-18 01:05:59,194 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 18:06:14] 2024-05-18 01:05:59,223 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,224 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,224 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,224 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,224 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,224 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,225 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,226 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 18:06:14] 2024-05-18 01:05:59,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,226 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 18:06:14] 2024-05-18 01:05:59,226 | INFO     | job 6208019745 has completed (purged errors)
[2024-05-17 18:06:14] 2024-05-18 01:05:59,227 | INFO     | overall cleanup function is called
[2024-05-17 18:06:14] 2024-05-18 01:06:00,236 | INFO     | --- collectZombieJob: --- 10, [44702]
[2024-05-17 18:06:14] 2024-05-18 01:06:00,237 | INFO     | zombie collector waiting for pid 44702
[2024-05-17 18:06:14] 2024-05-18 01:06:00,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 18:06:14] 2024-05-18 01:06:01,243 | INFO     | collected zombie processes
[2024-05-17 18:06:14] 2024-05-18 01:06:01,243 | INFO     | will now attempt to kill all subprocesses of pid=44702
[2024-05-17 18:06:14] 2024-05-18 01:06:01,454 | INFO     | process IDs to be killed: [44702] (in reverse order)
[2024-05-17 18:06:14] 2024-05-18 01:06:01,616 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 18:06:14] 2024-05-18 01:06:01,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 18:06:14] 2024-05-18 01:06:01,630 | INFO     | did not find any defunct processes belonging to 44702
[2024-05-17 18:06:14] 2024-05-18 01:06:01,641 | INFO     | did not find any defunct processes belonging to 44702
[2024-05-17 18:06:14] 2024-05-18 01:06:01,641 | INFO     | ready for new job
[2024-05-17 18:06:14] 2024-05-18 01:06:01,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 18:06:14] 2024-05-18 01:06:01,643 | INFO     | *************************************
[2024-05-17 18:06:14] 2024-05-18 01:06:01,644 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 18:06:14] 2024-05-18 01:06:01,644 | INFO     | *************************************
[2024-05-17 18:06:14] 2024-05-18 01:06:01,644 | INFO     | 
[2024-05-17 18:06:14] 2024-05-18 01:06:01,648 | INFO     | architecture information:
[2024-05-17 18:06:14] 2024-05-18 01:06:01,649 | INFO     | executing command: cat /etc/os-release
[2024-05-17 18:06:14] 2024-05-18 01:06:01,671 | INFO     | cat /etc/os-release:
[2024-05-17 18:06:14] NAME="CentOS Linux"
[2024-05-17 18:06:14] VERSION="7 (Core)"
[2024-05-17 18:06:14] ID="centos"
[2024-05-17 18:06:14] ID_LIKE="rhel fedora"
[2024-05-17 18:06:14] VERSION_ID="7"
[2024-05-17 18:06:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 18:06:14] ANSI_COLOR="0;31"
[2024-05-17 18:06:14] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 18:06:14] HOME_URL="https://www.centos.org/"
[2024-05-17 18:06:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 18:06:14] 
[2024-05-17 18:06:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 18:06:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 18:06:14] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 18:06:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 18:06:14] 
[2024-05-17 18:06:14] 2024-05-18 01:06:01,671 | INFO     | *************************************
[2024-05-17 18:06:14] 2024-05-18 01:06:02,175 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 18:06:14] 2024-05-18 01:06:02,201 | INFO     | sufficient remaining disk space (2095206891520 B)
[2024-05-17 18:06:14] 2024-05-18 01:06:02,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 18:06:14] 2024-05-18 01:06:02,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 18:06:14] 2024-05-18 01:06:02,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 18:06:14] 2024-05-18 01:06:02,203 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 18:06:14] 2024-05-18 01:06:02,203 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 18:06:14] 2024-05-18 01:06:02,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 18:06:14] 2024-05-18 01:06:02,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 18:06:14] 2024-05-18 01:06:02,536 | INFO     | all payload control threads have been joined
[2024-05-17 18:06:14] 2024-05-18 01:06:02,674 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-17 18:06:14] 2024-05-18 01:06:02,674 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-17 18:06:14] 2024-05-18 01:06:02,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 18:06:14] 2024-05-18 01:06:02,674 | INFO     | will abort loop
[2024-05-17 18:06:14] 2024-05-18 01:06:02,683 | INFO     | all data control threads have been joined
[2024-05-17 18:06:14] 2024-05-18 01:06:03,209 | INFO     | [job] retrieve thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:03,314 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:03,538 | INFO     | [payload] control thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:03,676 | INFO     | [job] job monitor thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:03,688 | INFO     | [data] control thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:03,731 | INFO     | all job control threads have been joined
[2024-05-17 18:06:14] 2024-05-18 01:06:03,835 | INFO     | [payload] failed_post thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:03,896 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 18:06:14] 2024-05-18 01:06:03,959 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,037 | INFO     | [payload] validate_post thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,187 | INFO     | [job] validate thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,207 | INFO     | [data] copytool_out thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,381 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 18:06:14] 2024-05-18 01:06:04,596 | INFO     | [data] copytool_in thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,691 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,696 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,737 | INFO     | [job] control thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:04,899 | INFO     | [job] queue monitor thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:08,389 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 18:06:14] 2024-05-18 01:06:09,010 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140647476631360)>', '<ExcThread(monitor, started 140647059142400)>']
[2024-05-17 18:06:14] 2024-05-18 01:06:09,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 18:06:14] 2024-05-18 01:06:09,249 | INFO     | [monitor] control thread has ended
[2024-05-17 18:06:14] 2024-05-18 01:06:14,023 | INFO     | all workflow threads have been joined
[2024-05-17 18:06:14] 2024-05-18 01:06:14,023 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 18:06:14] 2024-05-18 01:06:14,023 | INFO     | traces error code: 0
[2024-05-17 18:06:14] 2024-05-18 01:06:14,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 18:06:14] 2024-05-18 01:06:14,102 [wrapper] ==== pilot stdout END ====
[2024-05-17 18:06:14] 2024-05-18 01:06:14,105 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 18:06:14] 2024-05-18 01:06:14,107 [wrapper] pilotpid: 38193
[2024-05-17 18:06:14] 2024-05-18 01:06:14,110 [wrapper] Pilot exit status: 0
[2024-05-17 18:06:14] 2024-05-18 01:06:14,122 [wrapper] pandaids: 6208019745
[2024-05-17 18:06:14] 2024-05-18 01:06:14,201 [wrapper] cleanup: SIGTERM to supervisor_pilot 165745 38194
[2024-05-17 18:06:14] 2024-05-18 01:06:14,204 [wrapper] Test setup, not cleaning
[2024-05-17 18:06:14] 2024-05-18 01:06:14,206 [wrapper] ==== wrapper stdout END ====
[2024-05-17 18:06:14] 2024-05-18 01:06:14,209 [wrapper] ==== wrapper stderr END ====
[2024-05-17 18:06:14] 2024-05-18 01:06:14,213 [wrapper] apfmon messages muted
[2024-05-17 18:06:14]  *** Error codes and diagnostics ***
[2024-05-17 18:06:14]     "exeErrorCode": 0,
[2024-05-17 18:06:14]     "exeErrorDiag": "",
[2024-05-17 18:06:14]     "pilotErrorCode": 0,
[2024-05-17 18:06:14]     "pilotErrorDiag": "",
[2024-05-17 18:06:14]  *** Listing of results directory ***
[2024-05-17 18:06:14] total 921612
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc      5633 May 17 04:36 queuedata.json
[2024-05-17 18:06:14] -rwx------ 1 boinc boinc     32251 May 17 04:37 runpilot2-wrapper.sh
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc    467845 May 17 04:37 pilot3.tar.gz
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc       100 May 17 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 18:06:14] -rwxr-xr-x 1 boinc boinc      7986 May 17 16:35 run_atlas
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc       105 May 17 16:35 job.xml
[2024-05-17 18:06:14] -rw-r--r-- 2 boinc boinc 627692615 May 17 16:35 EVNT.38776160._000051.pool.root.1
[2024-05-17 18:06:14] -rw-r--r-- 2 boinc boinc     17537 May 17 16:35 start_atlas.sh
[2024-05-17 18:06:14] drwxrwx--x 2 boinc boinc      4096 May 17 16:35 shared
[2024-05-17 18:06:14] -rw-r--r-- 2 boinc boinc    480002 May 17 16:35 input.tar.gz
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc      6627 May 17 16:35 init_data.xml
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc         0 May 17 16:35 boinc_lockfile
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc      2625 May 17 16:35 pandaJob.out
[2024-05-17 18:06:14] -rw------- 1 boinc boinc       424 May 17 16:35 setup.sh.local
[2024-05-17 18:06:14] -rw------- 1 boinc boinc   1019081 May 17 16:35 agis_schedconf.cvmfs.json
[2024-05-17 18:06:14] -rw------- 1 boinc boinc         0 May 17 16:35 agis_ddmendpoints.agis.ALL.json
[2024-05-17 18:06:14] -rw------- 1 boinc boinc   1324701 May 17 16:35 cric_ddmendpoints.json
[2024-05-17 18:06:14] drwx------ 4 boinc boinc      4096 May 17 16:35 pilot3
[2024-05-17 18:06:14] -rw------- 1 boinc boinc 310672433 May 17 18:05 HITS.38920982._003183.pool.root.1
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc       530 May 17 18:05 boinc_task_state.xml
[2024-05-17 18:06:14] -rw------- 1 boinc boinc        95 May 17 18:05 pilot_heartbeat.json
[2024-05-17 18:06:14] -rw------- 1 boinc boinc      1058 May 17 18:05 memory_monitor_summary.json
[2024-05-17 18:06:14] -rw------- 1 boinc boinc    385206 May 17 18:05 log.38920982._003183.job.log.tgz.1
[2024-05-17 18:06:14] -rw------- 1 boinc boinc      7774 May 17 18:05 heartbeat.json
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc      8192 May 17 18:06 boinc_mmap_file
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc        27 May 17 18:06 wrapper_checkpoint.txt
[2024-05-17 18:06:14] -rw------- 1 boinc boinc      4519 May 17 18:06 pilotlog.txt
[2024-05-17 18:06:14] -rw------- 1 boinc boinc    530143 May 17 18:06 log.38920982._003183.job.log.1
[2024-05-17 18:06:14] -rw------- 1 boinc boinc       357 May 17 18:06 output.list
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc       620 May 17 18:06 runtime_log
[2024-05-17 18:06:14] -rw------- 1 boinc boinc    931840 May 17 18:06 result.tar.gz
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc     11286 May 17 18:06 runtime_log.err
[2024-05-17 18:06:14] -rw------- 1 boinc boinc       653 May 17 18:06 Iw1MDm94AS5nsSi4apGgGQJmABFKDmABFKDm4ySLDm5yQKDmLRP0Qn.diag
[2024-05-17 18:06:14] -rw-r--r-- 1 boinc boinc     21810 May 17 18:06 stderr.txt
[2024-05-17 18:06:14] HITS file was successfully produced:
[2024-05-17 18:06:14] -rw------- 1 boinc boinc 310672433 May 17 18:05 shared/HITS.pool.root.1
[2024-05-17 18:06:14]  *** Contents of shared directory: ***
[2024-05-17 18:06:14] total 917788
[2024-05-17 18:06:14] -rw-r--r-- 2 boinc boinc 627692615 May 17 16:35 ATLAS.root_0
[2024-05-17 18:06:14] -rw-r--r-- 2 boinc boinc     17537 May 17 16:35 start_atlas.sh
[2024-05-17 18:06:14] -rw-r--r-- 2 boinc boinc    480002 May 17 16:35 input.tar.gz
[2024-05-17 18:06:14] -rw------- 1 boinc boinc 310672433 May 17 18:05 HITS.pool.root.1
[2024-05-17 18:06:14] -rw------- 1 boinc boinc    931840 May 17 18:06 result.tar.gz
18:06:15 (33953): run_atlas exited; CPU time 51759.150714
18:06:15 (33953): called boinc_finish(0)

</stderr_txt>
]]>

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