Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:25:24 (216610): wrapper (7.7.26015): starting
14:25:24 (216610): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 14:25:24] Arguments: --nthreads 4
[2024-05-20 14:25:24] Threads: 4
[2024-05-20 14:25:24] Checking for CVMFS
[2024-05-20 14:25:24] No cvmfs_config command found, will try listing directly
[2024-05-20 14:25:24] CVMFS is ok
[2024-05-20 14:25:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 14:25:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 14:25:24] Further information can be found at the LHC@home message board.
[2024-05-20 14:25:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 14:25:24] Checking for apptainer binary...
[2024-05-20 14:25:24] which: no apptainer in ((null))
[2024-05-20 14:25:24] apptainer is not installed, using version from CVMFS
[2024-05-20 14:25:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 14:25:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2024-05-20 14:25:25] apptainer works
[2024-05-20 14:25:25] Set ATHENA_PROC_NUMBER=4
[2024-05-20 14:25:25] Set ATHENA_CORE_NUMBER=4
[2024-05-20 14:25:25] Starting ATLAS job with PandaID=6207981277
[2024-05-20 14:25:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 16:49:03]  *** The last 200 lines of the pilot log: ***
[2024-05-20 16:49:03] 2024-05-20 14:48:40,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-20 16:49:03] 2024-05-20 14:48:40,799 | INFO     | fitting pss+swap vs Time
[2024-05-20 16:49:03] 2024-05-20 14:48:40,799 | INFO     | model: linear, x: [1716207959.0, 1716208020.0, 1716208081.0, 1716208142.0, 1716208203.0, 1716208264.0, 1716208325.0, 1716208386.0, 1716208447.0, 1716208508.0, 1716
[2024-05-20 16:49:03] 2024-05-20 14:48:40,799 | INFO     | sum of square deviations: 869188390.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,800 | INFO     | sum of deviations: 42948928373.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,800 | INFO     | mean x: 1716212229.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,800 | INFO     | mean y: 2239467.0212765955
[2024-05-20 16:49:03] 2024-05-20 14:48:40,800 | INFO     | -- intersect: -84800407397.8174
[2024-05-20 16:49:03] 2024-05-20 14:48:40,800 | INFO     | intersect: -84800407397.8174
[2024-05-20 16:49:03] 2024-05-20 14:48:40,801 | INFO     | chi2: 4.784569438538914
[2024-05-20 16:49:03] 2024-05-20 14:48:40,801 | INFO     | model: linear, x: [1716207959.0, 1716208020.0, 1716208081.0, 1716208142.0, 1716208203.0, 1716208264.0, 1716208325.0, 1716208386.0, 1716208447.0, 1716208508.0, 1716
[2024-05-20 16:49:03] 2024-05-20 14:48:40,801 | INFO     | sum of square deviations: 779958810.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,802 | INFO     | sum of deviations: 50135560138.5
[2024-05-20 16:49:03] 2024-05-20 14:48:40,802 | INFO     | mean x: 1716212076.5
[2024-05-20 16:49:03] 2024-05-20 14:48:40,802 | INFO     | mean y: 2251314.257352941
[2024-05-20 16:49:03] 2024-05-20 14:48:40,802 | INFO     | -- intersect: -110315438118.32397
[2024-05-20 16:49:03] 2024-05-20 14:48:40,802 | INFO     | intersect: -110315438118.32397
[2024-05-20 16:49:03] 2024-05-20 14:48:40,803 | INFO     | chi2: 3.9997116111475037
[2024-05-20 16:49:03] 2024-05-20 14:48:40,803 | INFO     | current chi2=3.9997116111475037 (change=16.403938483356736 %)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,803 | INFO     | right removable region: 135
[2024-05-20 16:49:03] 2024-05-20 14:48:40,803 | INFO     | model: linear, x: [1716208264.0, 1716208325.0, 1716208386.0, 1716208447.0, 1716208508.0, 1716208569.0, 1716208630.0, 1716208691.0, 1716208752.0, 1716208813.0, 1716
[2024-05-20 16:49:03] 2024-05-20 14:48:40,803 | INFO     | sum of square deviations: 779958810.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,804 | INFO     | sum of deviations: 12151599885.499996
[2024-05-20 16:49:03] 2024-05-20 14:48:40,804 | INFO     | mean x: 1716212381.5
[2024-05-20 16:49:03] 2024-05-20 14:48:40,804 | INFO     | mean y: 2291878.7279411764
[2024-05-20 16:49:03] 2024-05-20 14:48:40,804 | INFO     | -- intersect: -26735948540.05658
[2024-05-20 16:49:03] 2024-05-20 14:48:40,804 | INFO     | intersect: -26735948540.05658
[2024-05-20 16:49:03] 2024-05-20 14:48:40,805 | INFO     | chi2: 2.3704196796212393
[2024-05-20 16:49:03] 2024-05-20 14:48:40,805 | INFO     | current chi2=2.3704196796212393 (change=50.45699074763339 %)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,805 | INFO     | model: linear, x: [1716208569.0, 1716208630.0, 1716208691.0, 1716208752.0, 1716208813.0, 1716208874.0, 1716208935.0, 1716208996.0, 1716209057.0, 1716209118.0, 1716
[2024-05-20 16:49:03] 2024-05-20 14:48:40,805 | INFO     | sum of square deviations: 697054930.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,806 | INFO     | sum of deviations: -12944692636.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,806 | INFO     | mean x: 1716212534.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,806 | INFO     | mean y: 2338067.427480916
[2024-05-20 16:49:03] 2024-05-20 14:48:40,806 | INFO     | -- intersect: 31873346785.034145
[2024-05-20 16:49:03] 2024-05-20 14:48:40,806 | INFO     | intersect: 31873346785.034145
[2024-05-20 16:49:03] 2024-05-20 14:48:40,806 | INFO     | chi2: 0.8938273885642265
[2024-05-20 16:49:03] 2024-05-20 14:48:40,807 | INFO     | current chi2=0.8938273885642265 (change=62.29244145040814 %)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,807 | INFO     | model: linear, x: [1716208874.0, 1716208935.0, 1716208996.0, 1716209057.0, 1716209118.0, 1716209179.0, 1716209240.0, 1716209301.0, 1716209362.0, 1716209423.0, 1716
[2024-05-20 16:49:03] 2024-05-20 14:48:40,807 | INFO     | sum of square deviations: 620244187.5
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | sum of deviations: -14920043436.000004
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | mean x: 1716212686.5
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | mean y: 2341846.873015873
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | -- intersect: 41286030342.53386
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | intersect: 41286030342.53386
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | chi2: 0.843237537265938
[2024-05-20 16:49:03] 2024-05-20 14:48:40,808 | INFO     | current chi2=0.843237537265938 (change=5.659912858516458 %)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,809 | INFO     | left removable region: 30
[2024-05-20 16:49:03] 2024-05-20 14:48:40,809 | INFO     | model: linear, x: [1716209789.0, 1716209850.0, 1716209911.0, 1716209972.0, 1716210033.0, 1716210094.0, 1716210155.0, 1716210216.0, 1716210277.0, 1716210338.0, 1716
[2024-05-20 16:49:03] 2024-05-20 14:48:40,809 | INFO     | sum of square deviations: 358927660.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | sum of deviations: -3572739560.999999
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | mean x: 1716212961.0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | mean y: 2352047.238095238
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | -- intersect: 17085409788.916872
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | intersect: 17085409788.916872
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | chi2: 0.008145626450377719
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | -- intersect: 17085409788.916872
[2024-05-20 16:49:03] 2024-05-20 14:48:40,810 | INFO     | current memory leak: -9.95 B/s (using 105 data points, chi2=0.01)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | ..............................
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . Timing measurements:
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . get job = 0 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . initial setup = 1 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . payload setup = 5 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . stage-in = 0 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . payload execution = 8553 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,811 | INFO     | . stage-out = 0 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,812 | INFO     | . log creation = 0 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,812 | INFO     | ..............................
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | 
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | job summary report
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | --------------------------------------------------
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | PanDA job id: 6207981277
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | task id: 38776104
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | errors: (none)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | pilot state: finished 
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | transexitcode: 0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | exeerrorcode: 0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | exeerrordiag: 
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | exitcode: 0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | exitmsg: OK
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | cpuconsumptiontime: 31665 s
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | nevents: 400
[2024-05-20 16:49:03] 2024-05-20 14:48:40,934 | INFO     | neventsw: 0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | pid: 228760
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | pgrp: 228760
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | corecount: 4
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | event service: False
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | sizes: {0: 2392092, 1: 2392291, 5: 2392497, 11: 2392553, 8563: 2420631, 8564: 2429613, 8567: 2429797, 8571: 2429967}
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | --------------------------------------------------
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | 
[2024-05-20 16:49:03] 2024-05-20 14:48:40,935 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2024-05-20 16:49:03] 2024-05-20 14:48:40,953 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,953 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,953 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,953 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | job 6207981277 has completed (purged errors)
[2024-05-20 16:49:03] 2024-05-20 14:48:40,954 | INFO     | overall cleanup function is called
[2024-05-20 16:49:03] 2024-05-20 14:48:41,961 | INFO     | --- collectZombieJob: --- 10, [228760]
[2024-05-20 16:49:03] 2024-05-20 14:48:41,961 | INFO     | zombie collector waiting for pid 228760
[2024-05-20 16:49:03] 2024-05-20 14:48:41,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 16:49:03] 2024-05-20 14:48:42,966 | INFO     | collected zombie processes
[2024-05-20 16:49:03] 2024-05-20 14:48:42,966 | INFO     | will now attempt to kill all subprocesses of pid=228760
[2024-05-20 16:49:03] 2024-05-20 14:48:43,145 | INFO     | process IDs to be killed: [228760] (in reverse order)
[2024-05-20 16:49:03] 2024-05-20 14:48:43,248 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 16:49:03] 2024-05-20 14:48:43,249 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 16:49:03] 2024-05-20 14:48:43,259 | INFO     | did not find any defunct processes belonging to 228760
[2024-05-20 16:49:03] 2024-05-20 14:48:43,266 | INFO     | did not find any defunct processes belonging to 228760
[2024-05-20 16:49:03] 2024-05-20 14:48:43,267 | INFO     | ready for new job
[2024-05-20 16:49:03] 2024-05-20 14:48:43,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 16:49:03] 2024-05-20 14:48:43,268 | INFO     | *************************************
[2024-05-20 16:49:03] 2024-05-20 14:48:43,268 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 16:49:03] 2024-05-20 14:48:43,268 | INFO     | *************************************
[2024-05-20 16:49:03] 2024-05-20 14:48:43,268 | INFO     | 
[2024-05-20 16:49:03] 2024-05-20 14:48:43,271 | INFO     | architecture information:
[2024-05-20 16:49:03] 2024-05-20 14:48:43,271 | INFO     | executing command: cat /etc/os-release
[2024-05-20 16:49:03] 2024-05-20 14:48:43,288 | INFO     | cat /etc/os-release:
[2024-05-20 16:49:03] NAME="CentOS Linux"
[2024-05-20 16:49:03] VERSION="7 (Core)"
[2024-05-20 16:49:03] ID="centos"
[2024-05-20 16:49:03] ID_LIKE="rhel fedora"
[2024-05-20 16:49:03] VERSION_ID="7"
[2024-05-20 16:49:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 16:49:03] ANSI_COLOR="0;31"
[2024-05-20 16:49:03] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 16:49:03] HOME_URL="https://www.centos.org/"
[2024-05-20 16:49:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 16:49:03] 
[2024-05-20 16:49:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 16:49:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 16:49:03] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 16:49:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 16:49:03] 
[2024-05-20 16:49:03] 2024-05-20 14:48:43,288 | INFO     | *************************************
[2024-05-20 16:49:03] 2024-05-20 14:48:43,791 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2024-05-20 16:49:03] 2024-05-20 14:48:43,812 | INFO     | sufficient remaining disk space (584356724736 B)
[2024-05-20 16:49:03] 2024-05-20 14:48:43,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 16:49:03] 2024-05-20 14:48:43,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 16:49:03] 2024-05-20 14:48:43,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 16:49:03] 2024-05-20 14:48:43,813 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 16:49:03] 2024-05-20 14:48:43,813 | INFO     | aborting loop
[2024-05-20 16:49:03] 2024-05-20 14:48:43,813 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 16:49:03] 2024-05-20 14:48:43,814 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 16:49:03] 2024-05-20 14:48:43,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 16:49:03] 2024-05-20 14:48:44,454 | INFO     | all payload control threads have been joined
[2024-05-20 16:49:03] 2024-05-20 14:48:44,511 | INFO     | all data control threads have been joined
[2024-05-20 16:49:03] 2024-05-20 14:48:44,818 | INFO     | [job] retrieve thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:44,819 | INFO     | [job] job monitor thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:44,936 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 16:49:03] 2024-05-20 14:48:45,136 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,189 | INFO     | [payload] validate_post thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,226 | INFO     | all job control threads have been joined
[2024-05-20 16:49:03] 2024-05-20 14:48:45,459 | INFO     | [payload] control thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,516 | INFO     | [data] control thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,588 | INFO     | [job] validate thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,703 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,829 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,872 | INFO     | [data] copytool_in thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:45,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 16:49:03] 2024-05-20 14:48:46,061 | INFO     | [payload] failed_post thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:46,231 | INFO     | [job] control thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:46,894 | INFO     | [job] queue monitor thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:46,941 | INFO     | [data] copytool_out thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:47,228 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 16:49:03] 2024-05-20 14:48:51,233 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:54,459 | INFO     | job.realtimelogging is not enabled
[2024-05-20 16:49:03] 2024-05-20 14:48:55,464 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 16:49:03] 2024-05-20 14:48:57,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47558527661120)>', '<ExcThread(monitor, started 47558698911488)>']
[2024-05-20 16:49:03] 2024-05-20 14:48:57,878 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 16:49:03] 2024-05-20 14:48:57,878 | INFO     | [monitor] control thread has ended
[2024-05-20 16:49:03] 2024-05-20 14:49:02,037 | INFO     | all workflow threads have been joined
[2024-05-20 16:49:03] 2024-05-20 14:49:02,038 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 16:49:03] 2024-05-20 14:49:02,038 | INFO     | traces error code: 0
[2024-05-20 16:49:03] 2024-05-20 14:49:02,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 16:49:03] 2024-05-20 14:49:02,116 [wrapper] ==== pilot stdout END ====
[2024-05-20 16:49:03] 2024-05-20 14:49:02,120 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 16:49:03] 2024-05-20 14:49:02,122 [wrapper] pilotpid: 221629
[2024-05-20 16:49:03] 2024-05-20 14:49:02,125 [wrapper] Pilot exit status: 0
[2024-05-20 16:49:03] 2024-05-20 14:49:02,137 [wrapper] pandaids: 6207981277
[2024-05-20 16:49:03] 2024-05-20 14:49:02,223 [wrapper] cleanup: SIGTERM to supervisor_pilot  571422 221630
[2024-05-20 16:49:03] 2024-05-20 14:49:02,225 [wrapper] Test setup, not cleaning
[2024-05-20 16:49:03] 2024-05-20 14:49:02,227 [wrapper] ==== wrapper stdout END ====
[2024-05-20 16:49:03] 2024-05-20 14:49:02,229 [wrapper] ==== wrapper stderr END ====
[2024-05-20 16:49:03] 2024-05-20 14:49:02,233 [wrapper] apfmon messages muted
[2024-05-20 16:49:03]  *** Error codes and diagnostics ***
[2024-05-20 16:49:03]     "exeErrorCode": 0,
[2024-05-20 16:49:03]     "exeErrorDiag": "",
[2024-05-20 16:49:03]     "pilotErrorCode": 0,
[2024-05-20 16:49:03]     "pilotErrorDiag": "",
[2024-05-20 16:49:03]  *** Listing of results directory ***
[2024-05-20 16:49:03] total 821488
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc    467845 May 17 12:38 pilot3.tar.gz
[2024-05-20 16:49:03] -rwx------ 1 boinc boinc     32251 May 17 12:44 runpilot2-wrapper.sh
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc      5633 May 17 12:44 queuedata.json
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc       100 May 20 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 16:49:03] -rwxr-xr-x 1 boinc boinc      7986 May 20 14:25 run_atlas
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc       105 May 20 14:25 job.xml
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc      6663 May 20 14:25 init_data.xml
[2024-05-20 16:49:03] -rw-r--r-- 2 boinc boinc 603446163 May 20 14:25 EVNT.38776100._000081.pool.root.1
[2024-05-20 16:49:03] -rw-r--r-- 2 boinc boinc     17537 May 20 14:25 start_atlas.sh
[2024-05-20 16:49:03] drwxrwx--x 2 boinc boinc      4096 May 20 14:25 shared
[2024-05-20 16:49:03] -rw-r--r-- 2 boinc boinc    480008 May 20 14:25 input.tar.gz
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc         0 May 20 14:25 boinc_lockfile
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc      2642 May 20 14:25 pandaJob.out
[2024-05-20 16:49:03] -rw------- 1 boinc boinc       424 May 20 14:25 setup.sh.local
[2024-05-20 16:49:03] -rw------- 1 boinc boinc   1013965 May 20 14:25 agis_schedconf.cvmfs.json
[2024-05-20 16:49:03] -rw------- 1 boinc boinc         0 May 20 14:25 agis_ddmendpoints.agis.ALL.json
[2024-05-20 16:49:03] -rw------- 1 boinc boinc   1324701 May 20 14:25 cric_ddmendpoints.json
[2024-05-20 16:49:03] drwx------ 4 boinc boinc      4096 May 20 14:25 pilot3
[2024-05-20 16:49:03] -rw------- 1 boinc boinc        95 May 20 16:47 pilot_heartbeat.json
[2024-05-20 16:49:03] -rw------- 1 boinc boinc 231866004 May 20 16:48 HITS.38776104._013012.pool.root.1
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc       530 May 20 16:48 boinc_task_state.xml
[2024-05-20 16:49:03] -rw------- 1 boinc boinc      1053 May 20 16:48 memory_monitor_summary.json
[2024-05-20 16:49:03] -rw------- 1 boinc boinc    300667 May 20 16:48 log.38776104._013012.job.log.tgz.1
[2024-05-20 16:49:03] -rw------- 1 boinc boinc      7767 May 20 16:48 heartbeat.json
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc      8192 May 20 16:48 boinc_mmap_file
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc        27 May 20 16:48 wrapper_checkpoint.txt
[2024-05-20 16:49:03] -rw------- 1 boinc boinc      4416 May 20 16:49 pilotlog.txt
[2024-05-20 16:49:03] -rw------- 1 boinc boinc    881031 May 20 16:49 log.38776104._013012.job.log.1
[2024-05-20 16:49:03] -rw------- 1 boinc boinc       357 May 20 16:49 output.list
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc       620 May 20 16:49 runtime_log
[2024-05-20 16:49:03] -rw------- 1 boinc boinc   1198080 May 20 16:49 result.tar.gz
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc     11409 May 20 16:49 runtime_log.err
[2024-05-20 16:49:03] -rw------- 1 boinc boinc       654 May 20 16:49 Qk3MDmPFAS5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm98KKDmSpkXRm.diag
[2024-05-20 16:49:03] -rw-r--r-- 1 boinc boinc     21310 May 20 16:49 stderr.txt
[2024-05-20 16:49:03] HITS file was successfully produced:
[2024-05-20 16:49:03] -rw------- 1 boinc boinc 231866004 May 20 16:48 shared/HITS.pool.root.1
[2024-05-20 16:49:03]  *** Contents of shared directory: ***
[2024-05-20 16:49:03] total 817408
[2024-05-20 16:49:03] -rw-r--r-- 2 boinc boinc 603446163 May 20 14:25 ATLAS.root_0
[2024-05-20 16:49:03] -rw-r--r-- 2 boinc boinc     17537 May 20 14:25 start_atlas.sh
[2024-05-20 16:49:03] -rw-r--r-- 2 boinc boinc    480008 May 20 14:25 input.tar.gz
[2024-05-20 16:49:03] -rw------- 1 boinc boinc 231866004 May 20 16:48 HITS.pool.root.1
[2024-05-20 16:49:03] -rw------- 1 boinc boinc   1198080 May 20 16:49 result.tar.gz
16:49:04 (216610): run_atlas exited; CPU time 31427.586702
16:49:04 (216610): called boinc_finish(0)

</stderr_txt>
]]>

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