Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
12:39:56 (228646): wrapper (7.7.26015): starting
12:39:56 (228646): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 12:39:56] Arguments: --nthreads 12
[2024-05-17 12:39:56] Threads: 12
[2024-05-17 12:39:56] Checking for CVMFS
[2024-05-17 12:39:56] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 12:39:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 12:39:56] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 12:39:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 12:39:56] 2.9.2.0 179502 183908 140276 132852 1 108 40638726 45568001 8614 130560 0 1234987427 99.804 698959767 18641 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 12:39:56] CVMFS is ok
[2024-05-17 12:39:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 12:39:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 12:39:56] Further information can be found at the LHC@home message board.
[2024-05-17 12:39:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 12:39:56] Checking for apptainer binary...
[2024-05-17 12:39:56] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 12:39:56] Running /usr/bin/apptainer --version
[2024-05-17 12:39:56] apptainer version 1.1.8-1.el7
[2024-05-17 12:39:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 12:39:57] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0169.triumf.lcg
[2024-05-17 12:39:57] apptainer works
[2024-05-17 12:39:57] Set ATHENA_PROC_NUMBER=12
[2024-05-17 12:39:57] Set ATHENA_CORE_NUMBER=12
[2024-05-17 12:39:57] Starting ATLAS job with PandaID=6207919565
[2024-05-17 12:39:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 14:12:01]  *** The last 200 lines of the pilot log: ***
[2024-05-17 14:12:01]  guid=5f167f91-73c5-4269-9920-ce033ecbf13a
[2024-05-17 14:12:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 14:12:01]  is_tar=False
[2024-05-17 14:12:01]  lfn=log.38920987._003815.job.log.tgz.1
[2024-05-17 14:12:01]  mtime=0
[2024-05-17 14:12:01]  protocol_id=None
[2024-05-17 14:12:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 14:12:01]  replicas=None
[2024-05-17 14:12:01]  scope=mc23_13p6TeV
[2024-05-17 14:12:01]  status=None
[2024-05-17 14:12:01]  status_code=0
[2024-05-17 14:12:01]  storage_token=
[2024-05-17 14:12:01]  surl=/home/boinc/slots/0/PanDA_Pilot-6207919565/log.38920987._003815.job.log.tgz.1
[2024-05-17 14:12:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/0c/log.38920987._003815.job.log.tgz.1
[2024-05-17 14:12:01]  workdir=None
[2024-05-17 14:12:01] ]
[2024-05-17 14:12:01] 2024-05-17 21:11:28,504 | INFO     | transferring file log.38920987._003815.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6207919565/log.38920987._003815.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 14:12:01] 2024-05-17 21:11:28,504 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6207919565/log.38920987._003815.job.log.tgz.1 /home/boinc/slots/0/log.38920987._003815.job.log.t
[2024-05-17 14:12:01] 2024-05-17 21:11:28,560 | INFO     | adding to output.list: log.38920987._003815.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/0c/log.38920987._003815.job.log.tg
[2024-05-17 14:12:01] 2024-05-17 21:11:28,560 | INFO     | summary of transferred files:
[2024-05-17 14:12:01] 2024-05-17 21:11:28,560 | INFO     |  -- lfn=log.38920987._003815.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 14:12:01] 2024-05-17 21:11:28,560 | INFO     | stage-out finished correctly
[2024-05-17 14:12:01] 2024-05-17 21:11:30,687 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 14:12:01] 2024-05-17 21:11:31,910 | WARNING  | process 239768 is no longer using CPU - aborting
[2024-05-17 14:12:01] 2024-05-17 21:11:31,910 | INFO     | will not send any job update
[2024-05-17 14:12:01] 2024-05-17 21:11:33,732 | INFO     | job 6207919565 has state=finished
[2024-05-17 14:12:01] 2024-05-17 21:11:33,733 | INFO     | preparing for final server update for job 6207919565 in state='finished'
[2024-05-17 14:12:01] 2024-05-17 21:11:33,734 | INFO     | this job has now completed (state=finished)
[2024-05-17 14:12:01] 2024-05-17 21:11:33,734 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 14:12:01] 2024-05-17 21:11:33,734 | INFO     | job 6207919565 has finished - writing final server update
[2024-05-17 14:12:01] 2024-05-17 21:11:33,734 | INFO     | total number of processed events: 400 (read)
[2024-05-17 14:12:01] 2024-05-17 21:11:33,737 | INFO     | executing command: lscpu
[2024-05-17 14:12:01] 2024-05-17 21:11:33,802 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 14:12:01] 2024-05-17 21:11:33,802 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 14:12:01] 2024-05-17 21:11:33,858 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 14:12:01] 2024-05-17 21:11:34,415 | INFO     | monitor loop #430: job 0:6207919565 is in state 'finished'
[2024-05-17 14:12:01] 2024-05-17 21:11:34,415 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 14:12:01] 2024-05-17 21:11:36,918 | INFO     | monitor loop #431: job 0:6207919565 is in state 'finished'
[2024-05-17 14:12:01] 2024-05-17 21:11:36,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 14:12:01] 2024-05-17 21:11:39,422 | INFO     | monitor loop #432: job 0:6207919565 is in state 'finished'
[2024-05-17 14:12:01] 2024-05-17 21:11:39,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 14:12:01] 2024-05-17 21:11:39,850 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 14:12:01] 2024-05-17 21:11:39,851 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6207919565/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 14:12:01] 2024-05-17 21:11:39,853 | INFO     | extracted standard info from prmon json
[2024-05-17 14:12:01] 2024-05-17 21:11:39,853 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 14:12:01] 2024-05-17 21:11:39,853 | WARNING  | GPU info not found in prmon json
[2024-05-17 14:12:01] 2024-05-17 21:11:39,854 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 14:12:01] 2024-05-17 21:11:39,854 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 14:12:01] 2024-05-17 21:11:39,856 | INFO     | fitting pss+swap vs Time
[2024-05-17 14:12:01] 2024-05-17 21:11:39,857 | INFO     | model: linear, x: [1715975153.0, 1715975214.0, 1715975275.0, 1715975336.0, 1715975397.0, 1715975458.0, 1715975519.0, 1715975580.0, 1715975641.0, 1715975702.0, 1715
[2024-05-17 14:12:01] 2024-05-17 21:11:39,857 | INFO     | sum of square deviations: 177275882.0
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | sum of deviations: 22638296759.000004
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | mean x: 1715977654.0
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | mean y: 2676813.9638554216
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | -- intersect: -219129282507.29694
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | intersect: -219129282507.29694
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | chi2: 2.4217419063585273
[2024-05-17 14:12:01] 2024-05-17 21:11:39,858 | INFO     | -- intersect: -219129282507.29694
[2024-05-17 14:12:01] 2024-05-17 21:11:39,859 | INFO     | current memory leak: 127.70 B/s (using 83 data points, chi2=2.42)
[2024-05-17 14:12:01] 2024-05-17 21:11:39,859 | INFO     | ..............................
[2024-05-17 14:12:01] 2024-05-17 21:11:39,859 | INFO     | . Timing measurements:
[2024-05-17 14:12:01] 2024-05-17 21:11:39,859 | INFO     | . get job = 0 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,859 | INFO     | . initial setup = 2 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,860 | INFO     | . payload setup = 8 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,860 | INFO     | . stage-in = 0 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,860 | INFO     | . payload execution = 5445 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,860 | INFO     | . stage-out = 0 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,860 | INFO     | . log creation = 0 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,860 | INFO     | ..............................
[2024-05-17 14:12:01] 2024-05-17 21:11:39,948 | INFO     | 
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | job summary report
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | --------------------------------------------------
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | PanDA job id: 6207919565
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | task id: 38920987
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | errors: (none)
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 14:12:01] 2024-05-17 21:11:39,949 | INFO     | pilot state: finished 
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | transexitcode: 0
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | exeerrorcode: 0
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | exeerrordiag: 
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | exitcode: 0
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | exitmsg: OK
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | cpuconsumptiontime: 52850 s
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | nevents: 400
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | neventsw: 0
[2024-05-17 14:12:01] 2024-05-17 21:11:39,950 | INFO     | pid: 239768
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | pgrp: 239768
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | corecount: 12
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | event service: False
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | sizes: {0: 2391954, 1: 2392153, 8: 2392359, 11: 2392387, 5456: 2418782, 5457: 2418781, 5458: 2427919, 5460: 2427975, 5469: 2428145}
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | --------------------------------------------------
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | 
[2024-05-17 14:12:01] 2024-05-17 21:11:39,951 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 14:12:01] 2024-05-17 21:11:40,003 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,006 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 14:12:01] 2024-05-17 21:11:40,006 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,006 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 14:12:01] 2024-05-17 21:11:40,006 | INFO     | job 6207919565 has completed (purged errors)
[2024-05-17 14:12:01] 2024-05-17 21:11:40,006 | INFO     | overall cleanup function is called
[2024-05-17 14:12:01] 2024-05-17 21:11:41,015 | INFO     | --- collectZombieJob: --- 10, [239768]
[2024-05-17 14:12:01] 2024-05-17 21:11:41,015 | INFO     | zombie collector waiting for pid 239768
[2024-05-17 14:12:01] 2024-05-17 21:11:41,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 14:12:01] 2024-05-17 21:11:42,021 | INFO     | collected zombie processes
[2024-05-17 14:12:01] 2024-05-17 21:11:42,021 | INFO     | will now attempt to kill all subprocesses of pid=239768
[2024-05-17 14:12:01] 2024-05-17 21:11:42,166 | INFO     | process IDs to be killed: [239768] (in reverse order)
[2024-05-17 14:12:01] 2024-05-17 21:11:42,293 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 14:12:01] 2024-05-17 21:11:42,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 14:12:01] 2024-05-17 21:11:42,303 | INFO     | did not find any defunct processes belonging to 239768
[2024-05-17 14:12:01] 2024-05-17 21:11:42,311 | INFO     | did not find any defunct processes belonging to 239768
[2024-05-17 14:12:01] 2024-05-17 21:11:42,311 | INFO     | ready for new job
[2024-05-17 14:12:01] 2024-05-17 21:11:42,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 14:12:01] 2024-05-17 21:11:42,313 | INFO     | *************************************
[2024-05-17 14:12:01] 2024-05-17 21:11:42,313 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 14:12:01] 2024-05-17 21:11:42,313 | INFO     | *************************************
[2024-05-17 14:12:01] 2024-05-17 21:11:42,313 | INFO     | 
[2024-05-17 14:12:01] 2024-05-17 21:11:42,316 | INFO     | architecture information:
[2024-05-17 14:12:01] 2024-05-17 21:11:42,317 | INFO     | executing command: cat /etc/os-release
[2024-05-17 14:12:01] 2024-05-17 21:11:42,354 | INFO     | cat /etc/os-release:
[2024-05-17 14:12:01] NAME="CentOS Linux"
[2024-05-17 14:12:01] VERSION="7 (Core)"
[2024-05-17 14:12:01] ID="centos"
[2024-05-17 14:12:01] ID_LIKE="rhel fedora"
[2024-05-17 14:12:01] VERSION_ID="7"
[2024-05-17 14:12:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 14:12:01] ANSI_COLOR="0;31"
[2024-05-17 14:12:01] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 14:12:01] HOME_URL="https://www.centos.org/"
[2024-05-17 14:12:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 14:12:01] 
[2024-05-17 14:12:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 14:12:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 14:12:01] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 14:12:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 14:12:01] 
[2024-05-17 14:12:01] 2024-05-17 21:11:42,355 | INFO     | *************************************
[2024-05-17 14:12:01] 2024-05-17 21:11:42,858 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 14:12:01] 2024-05-17 21:11:42,904 | INFO     | sufficient remaining disk space (2702335541248 B)
[2024-05-17 14:12:01] 2024-05-17 21:11:42,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 14:12:01] 2024-05-17 21:11:42,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 14:12:01] 2024-05-17 21:11:42,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 14:12:01] 2024-05-17 21:11:42,929 | INFO     | aborting loop
[2024-05-17 14:12:01] 2024-05-17 21:11:43,466 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 14:12:01] 2024-05-17 21:11:43,466 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 14:12:01] 2024-05-17 21:11:43,466 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 14:12:01] 2024-05-17 21:11:43,683 | INFO     | all data control threads have been joined
[2024-05-17 14:12:01] 2024-05-17 21:11:43,863 | INFO     | all job control threads have been joined
[2024-05-17 14:12:01] 2024-05-17 21:11:43,911 | INFO     | [job] retrieve thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:43,935 | INFO     | [job] job monitor thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,124 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 14:12:01] 2024-05-17 21:11:44,197 | INFO     | [data] copytool_in thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,247 | INFO     | all payload control threads have been joined
[2024-05-17 14:12:01] 2024-05-17 21:11:44,440 | INFO     | [job] validate thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,543 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,689 | INFO     | [data] control thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,726 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,726 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,735 | INFO     | [payload] validate_post thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,869 | INFO     | [job] control thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:44,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 14:12:01] 2024-05-17 21:11:44,969 | INFO     | [payload] failed_post thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:45,253 | INFO     | [payload] control thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:45,784 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 14:12:01] 2024-05-17 21:11:45,967 | INFO     | [job] queue monitor thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:46,129 | INFO     | [data] copytool_out thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:49,787 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:53,437 | INFO     | job.realtimelogging is not enabled
[2024-05-17 14:12:01] 2024-05-17 21:11:54,440 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 14:12:01] 2024-05-17 21:11:55,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777071544128)>', '<ExcThread(monitor, started 139776791394048)>']
[2024-05-17 14:12:01] 2024-05-17 21:11:56,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 14:12:01] 2024-05-17 21:11:56,517 | INFO     | [monitor] control thread has ended
[2024-05-17 14:12:01] 2024-05-17 21:12:00,639 | INFO     | all workflow threads have been joined
[2024-05-17 14:12:01] 2024-05-17 21:12:00,639 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 14:12:01] 2024-05-17 21:12:00,639 | INFO     | traces error code: 0
[2024-05-17 14:12:01] 2024-05-17 21:12:00,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 14:12:01] 2024-05-17 21:12:00,742 [wrapper] ==== pilot stdout END ====
[2024-05-17 14:12:01] 2024-05-17 21:12:00,754 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 14:12:01] 2024-05-17 21:12:00,765 [wrapper] pilotpid: 233151
[2024-05-17 14:12:01] 2024-05-17 21:12:00,772 [wrapper] Pilot exit status: 0
[2024-05-17 14:12:01] 2024-05-17 21:12:00,798 [wrapper] pandaids: 6207919565
[2024-05-17 14:12:01] 2024-05-17 21:12:00,861 [wrapper] cleanup: SIGTERM to supervisor_pilot 189997 233152
[2024-05-17 14:12:01] 2024-05-17 21:12:00,875 [wrapper] Test setup, not cleaning
[2024-05-17 14:12:01] 2024-05-17 21:12:00,884 [wrapper] ==== wrapper stdout END ====
[2024-05-17 14:12:01] 2024-05-17 21:12:00,898 [wrapper] ==== wrapper stderr END ====
[2024-05-17 14:12:01] 2024-05-17 21:12:00,917 [wrapper] apfmon messages muted
[2024-05-17 14:12:01]  *** Error codes and diagnostics ***
[2024-05-17 14:12:01]     "exeErrorCode": 0,
[2024-05-17 14:12:01]     "exeErrorDiag": "",
[2024-05-17 14:12:01]     "pilotErrorCode": 0,
[2024-05-17 14:12:01]     "pilotErrorDiag": "",
[2024-05-17 14:12:01]  *** Listing of results directory ***
[2024-05-17 14:12:01] total 956588
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc    467845 May 17 02:57 pilot3.tar.gz
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc      5633 May 17 03:08 queuedata.json
[2024-05-17 14:12:01] -rwx------ 1 boinc boinc     32251 May 17 03:09 runpilot2-wrapper.sh
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc       100 May 17 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 14:12:01] -rwxr-xr-x 1 boinc boinc      7986 May 17 12:39 run_atlas
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc       105 May 17 12:39 job.xml
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc      6652 May 17 12:39 init_data.xml
[2024-05-17 14:12:01] -rw-r--r-- 2 boinc boinc 636045072 May 17 12:39 EVNT.38776170._000146.pool.root.1
[2024-05-17 14:12:01] -rw-r--r-- 2 boinc boinc     17537 May 17 12:39 start_atlas.sh
[2024-05-17 14:12:01] drwxrwx--x 2 boinc boinc      4096 May 17 12:39 shared
[2024-05-17 14:12:01] -rw-r--r-- 2 boinc boinc    480004 May 17 12:39 input.tar.gz
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc         0 May 17 12:39 boinc_lockfile
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc      2617 May 17 12:39 pandaJob.out
[2024-05-17 14:12:01] -rw------- 1 boinc boinc       424 May 17 12:39 setup.sh.local
[2024-05-17 14:12:01] -rw------- 1 boinc boinc   1019073 May 17 12:40 agis_schedconf.cvmfs.json
[2024-05-17 14:12:01] -rw------- 1 boinc boinc         0 May 17 12:40 agis_ddmendpoints.agis.ALL.json
[2024-05-17 14:12:01] -rw------- 1 boinc boinc   1324701 May 17 12:40 cric_ddmendpoints.json
[2024-05-17 14:12:01] drwx------ 4 boinc boinc      4096 May 17 12:40 pilot3
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc       530 May 17 14:10 boinc_task_state.xml
[2024-05-17 14:12:01] -rw------- 1 boinc boinc 338137671 May 17 14:10 HITS.38920987._003815.pool.root.1
[2024-05-17 14:12:01] -rw------- 1 boinc boinc        95 May 17 14:11 pilot_heartbeat.json
[2024-05-17 14:12:01] -rw------- 1 boinc boinc      1054 May 17 14:11 memory_monitor_summary.json
[2024-05-17 14:12:01] -rw------- 1 boinc boinc    380255 May 17 14:11 log.38920987._003815.job.log.tgz.1
[2024-05-17 14:12:01] -rw------- 1 boinc boinc      7767 May 17 14:11 heartbeat.json
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc      8192 May 17 14:11 boinc_mmap_file
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc        27 May 17 14:11 wrapper_checkpoint.txt
[2024-05-17 14:12:01] -rw------- 1 boinc boinc      4282 May 17 14:12 pilotlog.txt
[2024-05-17 14:12:01] -rw------- 1 boinc boinc    536048 May 17 14:12 log.38920987._003815.job.log.1
[2024-05-17 14:12:01] -rw------- 1 boinc boinc       357 May 17 14:12 output.list
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc       620 May 17 14:12 runtime_log
[2024-05-17 14:12:01] -rw------- 1 boinc boinc    931840 May 17 14:12 result.tar.gz
[2024-05-17 14:12:01] -rw------- 1 boinc boinc       655 May 17 14:12 VL9NDmlh9R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmQtQKDmEDEoBn.diag
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc     11286 May 17 14:12 runtime_log.err
[2024-05-17 14:12:01] -rw-r--r-- 1 boinc boinc     21765 May 17 14:12 stderr.txt
[2024-05-17 14:12:01] HITS file was successfully produced:
[2024-05-17 14:12:01] -rw------- 1 boinc boinc 338137671 May 17 14:10 shared/HITS.pool.root.1
[2024-05-17 14:12:01]  *** Contents of shared directory: ***
[2024-05-17 14:12:01] total 952768
[2024-05-17 14:12:01] -rw-r--r-- 2 boinc boinc 636045072 May 17 12:39 ATLAS.root_0
[2024-05-17 14:12:01] -rw-r--r-- 2 boinc boinc     17537 May 17 12:39 start_atlas.sh
[2024-05-17 14:12:01] -rw-r--r-- 2 boinc boinc    480004 May 17 12:39 input.tar.gz
[2024-05-17 14:12:01] -rw------- 1 boinc boinc 338137671 May 17 14:10 HITS.pool.root.1
[2024-05-17 14:12:01] -rw------- 1 boinc boinc    931840 May 17 14:12 result.tar.gz
14:12:03 (228646): run_atlas exited; CPU time 52689.307524
14:12:03 (228646): called boinc_finish(0)

</stderr_txt>
]]>

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