Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
15:08:01 (174616): wrapper (7.7.26015): starting
15:08:01 (174616): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 15:08:01] Arguments: --nthreads 12
[2024-05-17 15:08:01] Threads: 12
[2024-05-17 15:08:01] Checking for CVMFS
[2024-05-17 15:08:02] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 15:08:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 15:08:02] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 15:08:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 15:08:02] 2.10.1.0 70285 184059 162972 132855 2 193 23482024 45568001 5104 130560 0 617806297 99.753 409812549 3828 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 15:08:02] CVMFS is ok
[2024-05-17 15:08:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 15:08:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 15:08:02] Further information can be found at the LHC@home message board.
[2024-05-17 15:08:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 15:08:02] Checking for apptainer binary...
[2024-05-17 15:08:02] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 15:08:02] Running /usr/bin/apptainer --version
[2024-05-17 15:08:02] apptainer version 1.1.8-1.el7
[2024-05-17 15:08:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 15:08:03] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0055.triumf.lcg
[2024-05-17 15:08:03] apptainer works
[2024-05-17 15:08:03] Set ATHENA_PROC_NUMBER=12
[2024-05-17 15:08:03] Set ATHENA_CORE_NUMBER=12
[2024-05-17 15:08:03] Starting ATLAS job with PandaID=6207885310
[2024-05-17 15:08:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 16:21:52]  *** The last 200 lines of the pilot log: ***
[2024-05-17 16:21:52]  filetype=log
[2024-05-17 16:21:52]  guid=aa0af7c3-bb71-46aa-bfc1-c7e1e9df7594
[2024-05-17 16:21:52]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 16:21:52]  is_tar=False
[2024-05-17 16:21:52]  lfn=log.38776146._014859.job.log.tgz.1
[2024-05-17 16:21:52]  mtime=0
[2024-05-17 16:21:52]  protocol_id=None
[2024-05-17 16:21:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 16:21:52]  replicas=None
[2024-05-17 16:21:52]  scope=mc23_13p6TeV
[2024-05-17 16:21:52]  status=None
[2024-05-17 16:21:52]  status_code=0
[2024-05-17 16:21:52]  storage_token=
[2024-05-17 16:21:52]  surl=/home/boinc/slots/0/PanDA_Pilot-6207885310/log.38776146._014859.job.log.tgz.1
[2024-05-17 16:21:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/50/log.38776146._014859.job.log.tgz.1
[2024-05-17 16:21:52]  workdir=None
[2024-05-17 16:21:52] ]
[2024-05-17 16:21:52] 2024-05-17 23:21:29,111 | INFO     | transferring file log.38776146._014859.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6207885310/log.38776146._014859.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 16:21:52] 2024-05-17 23:21:29,112 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6207885310/log.38776146._014859.job.log.tgz.1 /home/boinc/slots/0/log.38776146._014859.job.log.t
[2024-05-17 16:21:52] 2024-05-17 23:21:29,141 | INFO     | adding to output.list: log.38776146._014859.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/50/log.38776146._014859.job.log.tg
[2024-05-17 16:21:52] 2024-05-17 23:21:29,142 | INFO     | summary of transferred files:
[2024-05-17 16:21:52] 2024-05-17 23:21:29,142 | INFO     |  -- lfn=log.38776146._014859.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 16:21:52] 2024-05-17 23:21:29,142 | INFO     | stage-out finished correctly
[2024-05-17 16:21:52] 2024-05-17 23:21:30,385 | INFO     | monitor loop #348: job 0:6207885310 is in state 'finished'
[2024-05-17 16:21:52] 2024-05-17 23:21:30,386 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 16:21:52] 2024-05-17 23:21:31,672 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 16:21:52] 2024-05-17 23:21:31,762 | INFO     | job 6207885310 has state=finished
[2024-05-17 16:21:52] 2024-05-17 23:21:31,763 | INFO     | preparing for final server update for job 6207885310 in state='finished'
[2024-05-17 16:21:52] 2024-05-17 23:21:32,066 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2024-05-17 16:21:52] 2024-05-17 23:21:32,067 | INFO     | this job has now completed (state=finished)
[2024-05-17 16:21:52] 2024-05-17 23:21:32,067 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 16:21:52] 2024-05-17 23:21:32,067 | INFO     | job 6207885310 has finished - writing final server update
[2024-05-17 16:21:52] 2024-05-17 23:21:32,068 | INFO     | total number of processed events: 400 (read)
[2024-05-17 16:21:52] 2024-05-17 23:21:32,074 | INFO     | executing command: lscpu
[2024-05-17 16:21:52] 2024-05-17 23:21:32,141 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 16:21:52] 2024-05-17 23:21:32,141 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 16:21:52] 2024-05-17 23:21:32,207 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 16:21:52] 2024-05-17 23:21:32,889 | INFO     | monitor loop #349: job 0:6207885310 is in state 'finished'
[2024-05-17 16:21:52] 2024-05-17 23:21:32,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 16:21:52] 2024-05-17 23:21:35,392 | INFO     | monitor loop #350: job 0:6207885310 is in state 'finished'
[2024-05-17 16:21:52] 2024-05-17 23:21:35,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 16:21:52] 2024-05-17 23:21:37,546 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 16:21:52] 2024-05-17 23:21:37,547 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6207885310/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 16:21:52] 2024-05-17 23:21:37,548 | INFO     | extracted standard info from prmon json
[2024-05-17 16:21:52] 2024-05-17 23:21:37,548 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 16:21:52] 2024-05-17 23:21:37,548 | WARNING  | GPU info not found in prmon json
[2024-05-17 16:21:52] 2024-05-17 23:21:37,549 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 16:21:52] 2024-05-17 23:21:37,549 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 16:21:52] 2024-05-17 23:21:37,551 | INFO     | fitting pss+swap vs Time
[2024-05-17 16:21:52] 2024-05-17 23:21:37,551 | INFO     | model: linear, x: [1715984022.0, 1715984083.0, 1715984144.0, 1715984205.0, 1715984266.0, 1715984327.0, 1715984388.0, 1715984449.0, 1715984510.0, 1715984571.0, 1715
[2024-05-17 16:21:52] 2024-05-17 23:21:37,552 | INFO     | sum of square deviations: 85136480.0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,552 | INFO     | sum of deviations: 24295549395.000004
[2024-05-17 16:21:52] 2024-05-17 23:21:37,552 | INFO     | mean x: 1715985974.0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,552 | INFO     | mean y: 2573701.8615384614
[2024-05-17 16:21:52] 2024-05-17 23:21:37,552 | INFO     | -- intersect: -489691409329.19867
[2024-05-17 16:21:52] 2024-05-17 23:21:37,553 | INFO     | intersect: -489691409329.19867
[2024-05-17 16:21:52] 2024-05-17 23:21:37,553 | INFO     | chi2: 2.9106919460916845
[2024-05-17 16:21:52] 2024-05-17 23:21:37,553 | INFO     | -- intersect: -489691409329.19867
[2024-05-17 16:21:52] 2024-05-17 23:21:37,553 | INFO     | current memory leak: 285.37 B/s (using 65 data points, chi2=2.91)
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | ..............................
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . Timing measurements:
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . get job = 0 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . initial setup = 2 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . payload setup = 5 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . stage-in = 0 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . payload execution = 4369 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . stage-out = 0 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,554 | INFO     | . log creation = 0 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,555 | INFO     | ..............................
[2024-05-17 16:21:52] 2024-05-17 23:21:37,766 | INFO     | 
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | job summary report
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | --------------------------------------------------
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | PanDA job id: 6207885310
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | task id: 38776146
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | errors: (none)
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | pilot state: finished 
[2024-05-17 16:21:52] 2024-05-17 23:21:37,767 | INFO     | transexitcode: 0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | exeerrorcode: 0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | exeerrordiag: 
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | exitcode: 0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | exitmsg: OK
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | cpuconsumptiontime: 41093 s
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | nevents: 400
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | neventsw: 0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | pid: 185225
[2024-05-17 16:21:52] 2024-05-17 23:21:37,768 | INFO     | pgrp: 185225
[2024-05-17 16:21:52] 2024-05-17 23:21:37,769 | INFO     | corecount: 12
[2024-05-17 16:21:52] 2024-05-17 23:21:37,769 | INFO     | event service: False
[2024-05-17 16:21:52] 2024-05-17 23:21:37,769 | INFO     | sizes: {0: 2390667, 1: 2392200, 5: 2392406, 12: 2392462, 4379: 2418500, 4381: 2427454, 4383: 2427638, 4389: 2427808}
[2024-05-17 16:21:52] 2024-05-17 23:21:37,769 | INFO     | --------------------------------------------------
[2024-05-17 16:21:52] 2024-05-17 23:21:37,769 | INFO     | 
[2024-05-17 16:21:52] 2024-05-17 23:21:37,769 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 16:21:52] 2024-05-17 23:21:37,801 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,802 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,802 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,802 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,802 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,804 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 16:21:52] 2024-05-17 23:21:37,805 | INFO     | job 6207885310 has completed (purged errors)
[2024-05-17 16:21:52] 2024-05-17 23:21:37,805 | INFO     | overall cleanup function is called
[2024-05-17 16:21:52] 2024-05-17 23:21:38,816 | INFO     | --- collectZombieJob: --- 10, [185225]
[2024-05-17 16:21:52] 2024-05-17 23:21:38,817 | INFO     | zombie collector waiting for pid 185225
[2024-05-17 16:21:52] 2024-05-17 23:21:38,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 16:21:52] 2024-05-17 23:21:39,823 | INFO     | collected zombie processes
[2024-05-17 16:21:52] 2024-05-17 23:21:39,824 | INFO     | will now attempt to kill all subprocesses of pid=185225
[2024-05-17 16:21:52] 2024-05-17 23:21:39,955 | INFO     | process IDs to be killed: [185225] (in reverse order)
[2024-05-17 16:21:52] 2024-05-17 23:21:40,076 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 16:21:52] 2024-05-17 23:21:40,077 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 16:21:52] 2024-05-17 23:21:40,085 | INFO     | did not find any defunct processes belonging to 185225
[2024-05-17 16:21:52] 2024-05-17 23:21:40,092 | INFO     | did not find any defunct processes belonging to 185225
[2024-05-17 16:21:52] 2024-05-17 23:21:40,092 | INFO     | ready for new job
[2024-05-17 16:21:52] 2024-05-17 23:21:40,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 16:21:52] 2024-05-17 23:21:40,094 | INFO     | *************************************
[2024-05-17 16:21:52] 2024-05-17 23:21:40,094 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 16:21:52] 2024-05-17 23:21:40,095 | INFO     | *************************************
[2024-05-17 16:21:52] 2024-05-17 23:21:40,095 | INFO     | 
[2024-05-17 16:21:52] 2024-05-17 23:21:40,099 | INFO     | architecture information:
[2024-05-17 16:21:52] 2024-05-17 23:21:40,100 | INFO     | executing command: cat /etc/os-release
[2024-05-17 16:21:52] 2024-05-17 23:21:40,124 | INFO     | cat /etc/os-release:
[2024-05-17 16:21:52] NAME="CentOS Linux"
[2024-05-17 16:21:52] VERSION="7 (Core)"
[2024-05-17 16:21:52] ID="centos"
[2024-05-17 16:21:52] ID_LIKE="rhel fedora"
[2024-05-17 16:21:52] VERSION_ID="7"
[2024-05-17 16:21:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 16:21:52] ANSI_COLOR="0;31"
[2024-05-17 16:21:52] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 16:21:52] HOME_URL="https://www.centos.org/"
[2024-05-17 16:21:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 16:21:52] 
[2024-05-17 16:21:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 16:21:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 16:21:52] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 16:21:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 16:21:52] 
[2024-05-17 16:21:52] 2024-05-17 23:21:40,124 | INFO     | *************************************
[2024-05-17 16:21:52] 2024-05-17 23:21:40,628 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 16:21:52] 2024-05-17 23:21:40,656 | INFO     | sufficient remaining disk space (2232622776320 B)
[2024-05-17 16:21:52] 2024-05-17 23:21:40,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 16:21:52] 2024-05-17 23:21:40,657 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 16:21:52] 2024-05-17 23:21:40,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 16:21:52] 2024-05-17 23:21:40,658 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 16:21:52] 2024-05-17 23:21:40,659 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 16:21:52] 2024-05-17 23:21:40,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 16:21:52] 2024-05-17 23:21:40,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 16:21:52] 2024-05-17 23:21:41,217 | INFO     | all data control threads have been joined
[2024-05-17 16:21:52] 2024-05-17 23:21:41,325 | INFO     | all job control threads have been joined
[2024-05-17 16:21:52] 2024-05-17 23:21:41,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 16:21:52] 2024-05-17 23:21:41,411 | INFO     | aborting loop
[2024-05-17 16:21:52] 2024-05-17 23:21:41,661 | INFO     | [job] retrieve thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:41,715 | INFO     | [payload] validate_post thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:41,725 | INFO     | all payload control threads have been joined
[2024-05-17 16:21:52] 2024-05-17 23:21:41,831 | INFO     | [job] validate thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:41,911 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,148 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,222 | INFO     | [data] control thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,227 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 16:21:52] 2024-05-17 23:21:42,330 | INFO     | [job] control thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,417 | INFO     | [job] job monitor thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,655 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 16:21:52] 2024-05-17 23:21:42,663 | INFO     | [data] copytool_out thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,732 | INFO     | [payload] control thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,878 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,884 | INFO     | [data] copytool_in thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:42,887 | INFO     | [payload] failed_post thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:43,661 | INFO     | [job] queue monitor thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:46,286 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 16:21:52] 2024-05-17 23:21:46,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563391350592)>', '<ExcThread(monitor, started 140562971735808)>']
[2024-05-17 16:21:52] 2024-05-17 23:21:47,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 16:21:52] 2024-05-17 23:21:47,694 | INFO     | [monitor] control thread has ended
[2024-05-17 16:21:52] 2024-05-17 23:21:52,022 | INFO     | all workflow threads have been joined
[2024-05-17 16:21:52] 2024-05-17 23:21:52,022 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 16:21:52] 2024-05-17 23:21:52,022 | INFO     | traces error code: 0
[2024-05-17 16:21:52] 2024-05-17 23:21:52,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 16:21:52] 2024-05-17 23:21:52,124 [wrapper] ==== pilot stdout END ====
[2024-05-17 16:21:52] 2024-05-17 23:21:52,128 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 16:21:52] 2024-05-17 23:21:52,132 [wrapper] pilotpid: 178798
[2024-05-17 16:21:52] 2024-05-17 23:21:52,135 [wrapper] Pilot exit status: 0
[2024-05-17 16:21:52] 2024-05-17 23:21:52,148 [wrapper] pandaids: 6207885310
[2024-05-17 16:21:52] 2024-05-17 23:21:52,219 [wrapper] cleanup: SIGTERM to supervisor_pilot 226588 178799
[2024-05-17 16:21:52] 2024-05-17 23:21:52,223 [wrapper] Test setup, not cleaning
[2024-05-17 16:21:52] 2024-05-17 23:21:52,226 [wrapper] ==== wrapper stdout END ====
[2024-05-17 16:21:52] 2024-05-17 23:21:52,229 [wrapper] ==== wrapper stderr END ====
[2024-05-17 16:21:52] 2024-05-17 23:21:52,235 [wrapper] apfmon messages muted
[2024-05-17 16:21:52]  *** Error codes and diagnostics ***
[2024-05-17 16:21:52]     "exeErrorCode": 0,
[2024-05-17 16:21:52]     "exeErrorDiag": "",
[2024-05-17 16:21:52]     "pilotErrorCode": 0,
[2024-05-17 16:21:52]     "pilotErrorDiag": "",
[2024-05-17 16:21:52]  *** Listing of results directory ***
[2024-05-17 16:21:52] total 872856
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc    467845 May 17 01:41 pilot3.tar.gz
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc      5633 May 17 01:53 queuedata.json
[2024-05-17 16:21:52] -rwx------ 1 boinc boinc     32251 May 17 01:53 runpilot2-wrapper.sh
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc       100 May 17 15:08 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 16:21:52] -rwxr-xr-x 1 boinc boinc      7986 May 17 15:08 run_atlas
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc       105 May 17 15:08 job.xml
[2024-05-17 16:21:52] -rw-r--r-- 2 boinc boinc 615106710 May 17 15:08 EVNT.38776140._000126.pool.root.1
[2024-05-17 16:21:52] -rw-r--r-- 2 boinc boinc     17537 May 17 15:08 start_atlas.sh
[2024-05-17 16:21:52] drwxrwx--x 2 boinc boinc      4096 May 17 15:08 shared
[2024-05-17 16:21:52] -rw-r--r-- 2 boinc boinc    480006 May 17 15:08 input.tar.gz
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc      6626 May 17 15:08 init_data.xml
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc         0 May 17 15:08 boinc_lockfile
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc      2614 May 17 15:08 pandaJob.out
[2024-05-17 16:21:52] -rw------- 1 boinc boinc       424 May 17 15:08 setup.sh.local
[2024-05-17 16:21:52] -rw------- 1 boinc boinc   1019089 May 17 15:08 agis_schedconf.cvmfs.json
[2024-05-17 16:21:52] -rw------- 1 boinc boinc         0 May 17 15:08 agis_ddmendpoints.agis.ALL.json
[2024-05-17 16:21:52] -rw------- 1 boinc boinc   1324701 May 17 15:08 cric_ddmendpoints.json
[2024-05-17 16:21:52] drwx------ 4 boinc boinc      4096 May 17 15:08 pilot3
[2024-05-17 16:21:52] -rw------- 1 boinc boinc 273527122 May 17 16:20 HITS.38776146._014859.pool.root.1
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc       530 May 17 16:21 boinc_task_state.xml
[2024-05-17 16:21:52] -rw------- 1 boinc boinc        95 May 17 16:21 pilot_heartbeat.json
[2024-05-17 16:21:52] -rw------- 1 boinc boinc      1044 May 17 16:21 memory_monitor_summary.json
[2024-05-17 16:21:52] -rw------- 1 boinc boinc    376093 May 17 16:21 log.38776146._014859.job.log.tgz.1
[2024-05-17 16:21:52] -rw------- 1 boinc boinc      7758 May 17 16:21 heartbeat.json
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc        27 May 17 16:21 wrapper_checkpoint.txt
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc      8192 May 17 16:21 boinc_mmap_file
[2024-05-17 16:21:52] -rw------- 1 boinc boinc      4333 May 17 16:21 pilotlog.txt
[2024-05-17 16:21:52] -rw------- 1 boinc boinc    441730 May 17 16:21 log.38776146._014859.job.log.1
[2024-05-17 16:21:52] -rw------- 1 boinc boinc       357 May 17 16:21 output.list
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc       620 May 17 16:21 runtime_log
[2024-05-17 16:21:52] -rw------- 1 boinc boinc    839680 May 17 16:21 result.tar.gz
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc     11286 May 17 16:21 runtime_log.err
[2024-05-17 16:21:52] -rw------- 1 boinc boinc       651 May 17 16:21 PIfKDmkW8R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmSoQKDmxBq8Un.diag
[2024-05-17 16:21:52] -rw-r--r-- 1 boinc boinc     21753 May 17 16:21 stderr.txt
[2024-05-17 16:21:52] HITS file was successfully produced:
[2024-05-17 16:21:52] -rw------- 1 boinc boinc 273527122 May 17 16:20 shared/HITS.pool.root.1
[2024-05-17 16:21:52]  *** Contents of shared directory: ***
[2024-05-17 16:21:53] total 869132
[2024-05-17 16:21:53] -rw-r--r-- 2 boinc boinc 615106710 May 17 15:08 ATLAS.root_0
[2024-05-17 16:21:53] -rw-r--r-- 2 boinc boinc     17537 May 17 15:08 start_atlas.sh
[2024-05-17 16:21:53] -rw-r--r-- 2 boinc boinc    480006 May 17 15:08 input.tar.gz
[2024-05-17 16:21:53] -rw------- 1 boinc boinc 273527122 May 17 16:20 HITS.pool.root.1
[2024-05-17 16:21:53] -rw------- 1 boinc boinc    839680 May 17 16:21 result.tar.gz
16:21:54 (174616): run_atlas exited; CPU time 40995.279026
16:21:54 (174616): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN