Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
10:19:27 (3542056): wrapper (7.7.26015): starting
10:19:27 (3542056): wrapper: running run_atlas (--nthreads 4)
[2024-05-21 10:19:27] Arguments: --nthreads 4
[2024-05-21 10:19:27] Threads: 4
[2024-05-21 10:19:27] Checking for CVMFS
[2024-05-21 10:19:27] No cvmfs_config command found, will try listing directly
[2024-05-21 10:19:27] CVMFS is ok
[2024-05-21 10:19:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-21 10:19:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-21 10:19:27] Further information can be found at the LHC@home message board.
[2024-05-21 10:19:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-21 10:19:27] Checking for apptainer binary...
[2024-05-21 10:19:27] which: no apptainer in ((null))
[2024-05-21 10:19:27] apptainer is not installed, using version from CVMFS
[2024-05-21 10:19:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-21 10:19:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2024-05-21 10:19:30] apptainer works
[2024-05-21 10:19:30] Set ATHENA_PROC_NUMBER=4
[2024-05-21 10:19:30] Set ATHENA_CORE_NUMBER=4
[2024-05-21 10:19:30] Starting ATLAS job with PandaID=6207804316
[2024-05-21 10:19:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:27:56 (3854561): wrapper (7.7.26015): starting
15:27:56 (3854561): wrapper: running run_atlas (--nthreads 4)
[2024-05-21 15:27:56] Arguments: --nthreads 4
[2024-05-21 15:27:56] Threads: 4
[2024-05-21 15:27:56] This job has been restarted, cleaning up previous attempt
[2024-05-21 15:27:56] Checking for CVMFS
[2024-05-21 15:27:56] No cvmfs_config command found, will try listing directly
[2024-05-21 15:27:56] CVMFS is ok
[2024-05-21 15:27:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-21 15:27:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-21 15:27:56] Further information can be found at the LHC@home message board.
[2024-05-21 15:27:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-21 15:27:56] Checking for apptainer binary...
[2024-05-21 15:27:56] which: no apptainer in ((null))
[2024-05-21 15:27:56] apptainer is not installed, using version from CVMFS
[2024-05-21 15:27:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-21 15:27:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2024-05-21 15:27:57] apptainer works
[2024-05-21 15:27:57] Set ATHENA_PROC_NUMBER=4
[2024-05-21 15:27:57] Set ATHENA_CORE_NUMBER=4
[2024-05-21 15:27:57] Starting ATLAS job with PandaID=6207804316
[2024-05-21 15:27:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-21 15:31:27] Job failed
[2024-05-21 15:31:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-05-21 15:31:27] ++ pwd
[2024-05-21 15:31:27] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/1/
[2024-05-21 15:31:27] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/1/
[2024-05-21 15:31:27] + mv ATLAS.root_0 EVNT.38776100._000447.pool.root.1
[2024-05-21 15:31:27] mv: 'ATLAS.root_0' and 'EVNT.38776100._000447.pool.root.1' are the same file
[2024-05-21 15:31:27] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-21 15:31:27] + umask 077
[2024-05-21 15:31:27] ++ date +%s
[2024-05-21 15:31:27] + ACCOUNTING_STARTTIME=1716298077
[2024-05-21 15:31:27] + echo 'Detecting resource accounting method available for the job.'
[2024-05-21 15:31:27] Detecting resource accounting method available for the job.
[2024-05-21 15:31:27] + JOB_ACCOUNTING=
[2024-05-21 15:31:27] + command -v arc-job-cgroup
[2024-05-21 15:31:27] + '[' -z '' ']'
[2024-05-21 15:31:27] + GNU_TIME=/usr/bin/time
[2024-05-21 15:31:27] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-21 15:31:27] Looking for /usr/bin/time tool for accounting measurements
[2024-05-21 15:31:27] + '[' '!' -z /usr/bin/time ']'
[2024-05-21 15:31:27] + /usr/bin/time --version
[2024-05-21 15:31:27] + echo 'GNU time found and will be used for job accounting.'
[2024-05-21 15:31:27] GNU time found and will be used for job accounting.
[2024-05-21 15:31:27] + JOB_ACCOUNTING=gnutime
[2024-05-21 15:31:27] + '[' -z gnutime ']'
[2024-05-21 15:31:27] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-21 15:31:27] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-21 15:31:27] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-17/BOINC_MCORE/6207804316.out
[2024-05-21 15:31:27] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-17/BOINC_MCORE/6207804316.out
[2024-05-21 15:31:27] + export PILOT_NOKILL=YES
[2024-05-21 15:31:27] + PILOT_NOKILL=YES
[2024-05-21 15:31:27] + export GRID_GLOBAL_JOBID=Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-21 15:31:27] + GRID_GLOBAL_JOBID=Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-21 15:31:27] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-21 15:31:27] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-21 15:31:27] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-21 15:31:27] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-21 15:31:27] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-21 15:31:27] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-21 15:31:27] ++ pwd
[2024-05-21 15:31:27] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/1
[2024-05-21 15:31:27] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-21 15:31:27] ++ pwd
[2024-05-21 15:31:27] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/1/log.38776104._012446.job.log.1
[2024-05-21 15:31:27] ++ pwd
[2024-05-21 15:31:27] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/1/log.38776104._012446.job.log.1
[2024-05-21 15:31:27] ++ pwd
[2024-05-21 15:31:27] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/1.diag
[2024-05-21 15:31:27] + '[' '!' -z '' ']'
[2024-05-21 15:31:27] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-21 15:31:27] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-21 15:31:27] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-21 15:31:27] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-21 15:31:27] + '[' '!' -z '' ']'
[2024-05-21 15:31:27] + '[' -z yes ']'
[2024-05-21 15:31:27] ++ pwd
[2024-05-21 15:31:27] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag
[2024-05-21 15:31:27] + runtimeenvironments=
[2024-05-21 15:31:27] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-21 15:31:27] + RTE_function_0 1
[2024-05-21 15:31:27] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-21 15:31:27] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-21 15:31:27] + export BOINC_APP=ATLAS
[2024-05-21 15:31:27] + BOINC_APP=ATLAS
[2024-05-21 15:31:27] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-21 15:31:27] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-21 15:31:27] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-21 15:31:27] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-21 15:31:27] + '[' -z 1 ']'
[2024-05-21 15:31:27] + '[' 1 == 1 ']'
[2024-05-21 15:31:27] + shift
[2024-05-21 15:31:27] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-21 15:31:27] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-21 15:31:27] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-21 15:31:27] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/1/
[2024-05-21 15:31:27] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/1/
[2024-05-21 15:31:27] + '[' -e /scratch/boinc/var/slot28/slots/1/init_data.xml ']'
[2024-05-21 15:31:27] + grep '<use_http_proxy/>' /scratch/boinc/var/slot28/slots/1/init_data.xml
[2024-05-21 15:31:27] + '[' -e /scratch/boinc/var/slot28/slots/1/init_data.xml ']'
[2024-05-21 15:31:27] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot28/slots/1/init_data.xml
[2024-05-21 15:31:27] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-21 15:31:27] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-21 15:31:27] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-21 15:31:27] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-21 15:31:27] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-21 15:31:27] + '[' 0 -ne 0 ']'
[2024-05-21 15:31:27] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-21 15:31:27] + '[' -f /etc/os-release ']'
[2024-05-21 15:31:27] +++ cat /etc/os-release
[2024-05-21 15:31:27] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-21 15:31:27] +++ NAME='CentOS Linux'
[2024-05-21 15:31:27] +++ VERSION='7 (Core)'
[2024-05-21 15:31:27] +++ ID=centos
[2024-05-21 15:31:27] +++ ID_LIKE='rhel fedora'
[2024-05-21 15:31:27] +++ VERSION_ID=7
[2024-05-21 15:31:27] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-21 15:31:27] +++ ANSI_COLOR='0;31'
[2024-05-21 15:31:27] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-21 15:31:27] +++ HOME_URL=https://www.centos.org/
[2024-05-21 15:31:27] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-21 15:31:27] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-21 15:31:27] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-21 15:31:27] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-21 15:31:27] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-21 15:31:27] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-21 15:31:27] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-21 15:31:27] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-21 15:31:27] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-21 15:31:27] + HOME=/scratch/boinc/var/slot28/slots/1
[2024-05-21 15:31:27] + export HOME
[2024-05-21 15:31:27] + cd /scratch/boinc/var/slot28/slots/1
[2024-05-21 15:31:27] + '[' '!' -z '' ']'
[2024-05-21 15:31:27] + '[' -z '' ']'
[2024-05-21 15:31:27] ++ /bin/hostname -f
[2024-05-21 15:31:27] + nodename=skurut32.grid.cesnet.cz
[2024-05-21 15:31:27] + echo nodename=skurut32.grid.cesnet.cz
[2024-05-21 15:31:27] + echo Processors=1
[2024-05-21 15:31:27] + echo Benchmark=HEPSPEC:1.0
[2024-05-21 15:31:27] + executable=./runpilot2-wrapper.sh
[2024-05-21 15:31:27] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-21 15:31:27] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-21 15:31:27] ++ head -n 1
[2024-05-21 15:31:27] ++ tr -d '\0'
[2024-05-21 15:31:27] + line1='#!/bin/bash'
[2024-05-21 15:31:27] ++ echo '#!/bin/bash'
[2024-05-21 15:31:27] ++ sed -n 's/^#! *//p'
[2024-05-21 15:31:27] + shebang=/bin/bash
[2024-05-21 15:31:27] ++ echo /bin/bash
[2024-05-21 15:31:27] ++ awk '{print $1}'
[2024-05-21 15:31:27] + interpreter=/bin/bash
[2024-05-21 15:31:27] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-21 15:31:27] + '[' x/bin/bash = x ']'
[2024-05-21 15:31:27] + type /bin/bash
[2024-05-21 15:31:27] + '[' xgnutime = xgnutime ']'
[2024-05-21 15:31:27] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-21 15:31:27] + RESULT=2
[2024-05-21 15:31:27] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag
[2024-05-21 15:31:27] ++ grep domain_name init_data.xml
[2024-05-21 15:31:27] ++ awk -F '>' '{print $2}'
[2024-05-21 15:31:27] ++ awk -F '<' '{print $1}'
[2024-05-21 15:31:27] ++ sed -e 's# #_#g'
[2024-05-21 15:31:27] + hostname=skurut32.grid.cesnet.cz
[2024-05-21 15:31:27] ++ grep user_name init_data.xml
[2024-05-21 15:31:27] ++ awk -F '>' '{print $2}'
[2024-05-21 15:31:27] ++ awk -F '<' '{print $1}'
[2024-05-21 15:31:27] ++ sed -e 's# #_#g'
[2024-05-21 15:31:27] + username=praguelcg2
[2024-05-21 15:31:27] + nodename=praguelcg2@skurut32.grid.cesnet.cz
[2024-05-21 15:31:27] + echo nodename=praguelcg2@skurut32.grid.cesnet.cz
[2024-05-21 15:31:27] + '[' -n 4 ']'
[2024-05-21 15:31:27] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag
[2024-05-21 15:31:27] + echo exitcode=2
[2024-05-21 15:31:27] + runtimeenvironments=
[2024-05-21 15:31:27] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-21 15:31:27] + RTE_function_0 2
[2024-05-21 15:31:27] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-21 15:31:27] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-21 15:31:27] + export BOINC_APP=ATLAS
[2024-05-21 15:31:27] + BOINC_APP=ATLAS
[2024-05-21 15:31:27] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-21 15:31:27] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-21 15:31:27] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-21 15:31:27] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-21 15:31:27] + '[' -z 2 ']'
[2024-05-21 15:31:27] + '[' 2 == 1 ']'
[2024-05-21 15:31:27] + '[' 0 -ne 0 ']'
[2024-05-21 15:31:27] + echo 'zip all output files'
[2024-05-21 15:31:27] + flist='*.diag '
[2024-05-21 15:31:27] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-21 15:31:27] + '[' -e ./heartbeat.json ']'
[2024-05-21 15:31:27] + flist='*.diag  ./heartbeat.json'
[2024-05-21 15:31:27] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-21 15:31:27] + '[' -e ./output.list ']'
[2024-05-21 15:31:27] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-21 15:31:27] + '[' -e ./log.38776104._012446.job.log.1 ']'
[2024-05-21 15:31:27] + flist='*.diag  ./heartbeat.json ./log.38776104._012446.job.log.1'
[2024-05-21 15:31:27] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-21 15:31:27] + '[' -e ./log.38776104._012446.job.log.1 ']'
[2024-05-21 15:31:27] + flist='*.diag  ./heartbeat.json ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1'
[2024-05-21 15:31:27] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-21 15:31:27] + '[' -e ./gmlog/ ']'
[2024-05-21 15:31:27] + '[' -f output.list ']'
[2024-05-21 15:31:27] + tar cvf result.tar.gz Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag ./heartbeat.json ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1
[2024-05-21 15:31:27] + '[' xgnutime = xcgroup ']'
[2024-05-21 15:31:27] + '[' -n '' ']'
[2024-05-21 15:31:27] + '[' -n '' ']'
[2024-05-21 15:31:27] ++ date +%s
[2024-05-21 15:31:27] + ACCOUNTING_ENDTIME=1716298264
[2024-05-21 15:31:27] ++ date -d '1970-01-01 UTC 1716298077 seconds' +%Y%m%d%H%M%SZ
[2024-05-21 15:31:27] + echo LRMSStartTime=20240521152757Z
[2024-05-21 15:31:27] ++ date -d '1970-01-01 UTC 1716298264 seconds' +%Y%m%d%H%M%SZ
[2024-05-21 15:31:27] + echo LRMSEndTime=20240521153104Z
[2024-05-21 15:31:27] + echo walltime=187
[2024-05-21 15:31:27] + echo exitcode=2
[2024-05-21 15:31:27] + exit 2
[2024-05-21 15:31:27] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-21 15:31:27] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-21 15:31:27] ./pilot3/pilot/util/loggingsupport.py
[2024-05-21 15:31:27] ./pilot3/pilot/util/realtimelogger.py
[2024-05-21 15:31:27] ./log.38776104._012446.job.log.1
[2024-05-21 15:31:27] ./runtime_log.err
[2024-05-21 15:31:27] ./PanDA_Pilot-6207804316/PoolFileCatalog.xml
[2024-05-21 15:31:27] ./PanDA_Pilot-6207804316/log.EVNTtoHITS
[2024-05-21 15:31:27] ./PanDA_Pilot-6207804316/prmon.log
[2024-05-21 15:31:27] ./PanDA_Pilot-6207804316/pilotlog.txt
[2024-05-21 15:31:27] ./runtime_log
[2024-05-21 15:31:27] ./log.38776104._012446.job.log.tgz.1
[2024-05-21 15:31:27] ./pilotlog.txt
04:22:58 (466230): wrapper (7.7.26015): starting
04:22:58 (466230): wrapper: running run_atlas (--nthreads 4)
[2024-05-22 04:22:59] Arguments: --nthreads 4
[2024-05-22 04:22:59] Threads: 4
[2024-05-22 04:22:59] This job has been restarted, cleaning up previous attempt
[2024-05-22 04:22:59] Checking for CVMFS
[2024-05-22 04:22:59] No cvmfs_config command found, will try listing directly
[2024-05-22 04:22:59] CVMFS is ok
[2024-05-22 04:22:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-22 04:22:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-22 04:22:59] Further information can be found at the LHC@home message board.
[2024-05-22 04:22:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-22 04:22:59] Checking for apptainer binary...
[2024-05-22 04:22:59] which: no apptainer in ((null))
[2024-05-22 04:22:59] apptainer is not installed, using version from CVMFS
[2024-05-22 04:22:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-22 04:23:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2024-05-22 04:23:00] apptainer works
[2024-05-22 04:23:00] Set ATHENA_PROC_NUMBER=4
[2024-05-22 04:23:00] Set ATHENA_CORE_NUMBER=4
[2024-05-22 04:23:00] Starting ATLAS job with PandaID=6207804316
[2024-05-22 04:23:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:22:46 (1685553): wrapper (7.7.26015): starting
01:22:46 (1685553): wrapper: running run_atlas (--nthreads 4)
[2024-05-23 01:22:46] Arguments: --nthreads 4
[2024-05-23 01:22:46] Threads: 4
[2024-05-23 01:22:46] This job has been restarted, cleaning up previous attempt
[2024-05-23 01:22:46] Checking for CVMFS
[2024-05-23 01:22:46] No cvmfs_config command found, will try listing directly
[2024-05-23 01:22:46] CVMFS is ok
[2024-05-23 01:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-23 01:22:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-23 01:22:47] Further information can be found at the LHC@home message board.
[2024-05-23 01:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-23 01:22:47] Checking for apptainer binary...
[2024-05-23 01:22:47] which: no apptainer in ((null))
[2024-05-23 01:22:47] apptainer is not installed, using version from CVMFS
[2024-05-23 01:22:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-23 01:22:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2024-05-23 01:22:47] apptainer works
[2024-05-23 01:22:47] Set ATHENA_PROC_NUMBER=4
[2024-05-23 01:22:47] Set ATHENA_CORE_NUMBER=4
[2024-05-23 01:22:47] Starting ATLAS job with PandaID=6207804316
[2024-05-23 01:22:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-23 01:52:53] Job failed
[2024-05-23 01:52:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-05-23 01:52:53] ++ pwd
[2024-05-23 01:52:53] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/1/
[2024-05-23 01:52:53] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/1/
[2024-05-23 01:52:53] + mv ATLAS.root_0 EVNT.38776100._000447.pool.root.1
[2024-05-23 01:52:53] mv: 'ATLAS.root_0' and 'EVNT.38776100._000447.pool.root.1' are the same file
[2024-05-23 01:52:53] + tar --strip-components=5 -xvf input.tar.gz
[2024-05-23 01:52:53] + umask 077
[2024-05-23 01:52:53] ++ date +%s
[2024-05-23 01:52:53] + ACCOUNTING_STARTTIME=1716420168
[2024-05-23 01:52:53] + echo 'Detecting resource accounting method available for the job.'
[2024-05-23 01:52:53] Detecting resource accounting method available for the job.
[2024-05-23 01:52:53] + JOB_ACCOUNTING=
[2024-05-23 01:52:53] + command -v arc-job-cgroup
[2024-05-23 01:52:53] + '[' -z '' ']'
[2024-05-23 01:52:53] + GNU_TIME=/usr/bin/time
[2024-05-23 01:52:53] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-05-23 01:52:53] Looking for /usr/bin/time tool for accounting measurements
[2024-05-23 01:52:53] + '[' '!' -z /usr/bin/time ']'
[2024-05-23 01:52:53] + /usr/bin/time --version
[2024-05-23 01:52:53] + echo 'GNU time found and will be used for job accounting.'
[2024-05-23 01:52:53] GNU time found and will be used for job accounting.
[2024-05-23 01:52:53] + JOB_ACCOUNTING=gnutime
[2024-05-23 01:52:53] + '[' -z gnutime ']'
[2024-05-23 01:52:53] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-23 01:52:53] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-05-23 01:52:53] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-17/BOINC_MCORE/6207804316.out
[2024-05-23 01:52:53] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-05-17/BOINC_MCORE/6207804316.out
[2024-05-23 01:52:53] + export PILOT_NOKILL=YES
[2024-05-23 01:52:53] + PILOT_NOKILL=YES
[2024-05-23 01:52:53] + export GRID_GLOBAL_JOBID=Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-23 01:52:53] + GRID_GLOBAL_JOBID=Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-23 01:52:53] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-23 01:52:53] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm
[2024-05-23 01:52:53] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-23 01:52:53] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-05-23 01:52:53] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-23 01:52:53] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-05-23 01:52:53] ++ pwd
[2024-05-23 01:52:53] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/1
[2024-05-23 01:52:53] + RUNTIME_JOB_STDIN=/dev/null
[2024-05-23 01:52:53] ++ pwd
[2024-05-23 01:52:53] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/1/log.38776104._012446.job.log.1
[2024-05-23 01:52:53] ++ pwd
[2024-05-23 01:52:53] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/1/log.38776104._012446.job.log.1
[2024-05-23 01:52:53] ++ pwd
[2024-05-23 01:52:53] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/1.diag
[2024-05-23 01:52:53] + '[' '!' -z '' ']'
[2024-05-23 01:52:53] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-05-23 01:52:53] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-05-23 01:52:53] + RUNTIME_FRONTEND_SEES_NODE=
[2024-05-23 01:52:53] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-05-23 01:52:53] + '[' '!' -z '' ']'
[2024-05-23 01:52:53] + '[' -z yes ']'
[2024-05-23 01:52:53] ++ pwd
[2024-05-23 01:52:53] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag
[2024-05-23 01:52:53] + runtimeenvironments=
[2024-05-23 01:52:53] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-23 01:52:53] + RTE_function_0 1
[2024-05-23 01:52:53] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-23 01:52:53] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-23 01:52:53] + export BOINC_APP=ATLAS
[2024-05-23 01:52:53] + BOINC_APP=ATLAS
[2024-05-23 01:52:53] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-23 01:52:53] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-23 01:52:53] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-23 01:52:53] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-23 01:52:53] + '[' -z 1 ']'
[2024-05-23 01:52:53] + '[' 1 == 1 ']'
[2024-05-23 01:52:53] + shift
[2024-05-23 01:52:53] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-05-23 01:52:53] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-23 01:52:53] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-05-23 01:52:53] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/1/
[2024-05-23 01:52:53] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/1/
[2024-05-23 01:52:53] + '[' -e /scratch/boinc/var/slot28/slots/1/init_data.xml ']'
[2024-05-23 01:52:53] + grep '<use_http_proxy/>' /scratch/boinc/var/slot28/slots/1/init_data.xml
[2024-05-23 01:52:53] + '[' -e /scratch/boinc/var/slot28/slots/1/init_data.xml ']'
[2024-05-23 01:52:53] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot28/slots/1/init_data.xml
[2024-05-23 01:52:53] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-05-23 01:52:53] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-23 01:52:53] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-05-23 01:52:53] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-23 01:52:53] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-05-23 01:52:53] + '[' 0 -ne 0 ']'
[2024-05-23 01:52:53] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-05-23 01:52:53] + '[' -f /etc/os-release ']'
[2024-05-23 01:52:53] +++ cat /etc/os-release
[2024-05-23 01:52:53] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-05-23 01:52:53] +++ NAME='CentOS Linux'
[2024-05-23 01:52:53] +++ VERSION='7 (Core)'
[2024-05-23 01:52:53] +++ ID=centos
[2024-05-23 01:52:53] +++ ID_LIKE='rhel fedora'
[2024-05-23 01:52:53] +++ VERSION_ID=7
[2024-05-23 01:52:53] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-05-23 01:52:53] +++ ANSI_COLOR='0;31'
[2024-05-23 01:52:53] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-05-23 01:52:53] +++ HOME_URL=https://www.centos.org/
[2024-05-23 01:52:53] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-05-23 01:52:53] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-05-23 01:52:53] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-05-23 01:52:53] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-05-23 01:52:53] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-05-23 01:52:53] ++ echo 'CentOS Linux 7 (Core)'
[2024-05-23 01:52:53] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-05-23 01:52:53] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-05-23 01:52:53] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-05-23 01:52:53] + HOME=/scratch/boinc/var/slot28/slots/1
[2024-05-23 01:52:53] + export HOME
[2024-05-23 01:52:53] + cd /scratch/boinc/var/slot28/slots/1
[2024-05-23 01:52:53] + '[' '!' -z '' ']'
[2024-05-23 01:52:53] + '[' -z '' ']'
[2024-05-23 01:52:53] ++ /bin/hostname -f
[2024-05-23 01:52:53] + nodename=skurut32.grid.cesnet.cz
[2024-05-23 01:52:53] + echo nodename=skurut32.grid.cesnet.cz
[2024-05-23 01:52:53] + echo Processors=1
[2024-05-23 01:52:53] + echo Benchmark=HEPSPEC:1.0
[2024-05-23 01:52:53] + executable=./runpilot2-wrapper.sh
[2024-05-23 01:52:53] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-05-23 01:52:53] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-05-23 01:52:53] ++ head -n 1
[2024-05-23 01:52:53] ++ tr -d '\0'
[2024-05-23 01:52:53] + line1='#!/bin/bash'
[2024-05-23 01:52:53] ++ echo '#!/bin/bash'
[2024-05-23 01:52:53] ++ sed -n 's/^#! *//p'
[2024-05-23 01:52:53] + shebang=/bin/bash
[2024-05-23 01:52:53] ++ echo /bin/bash
[2024-05-23 01:52:53] ++ awk '{print $1}'
[2024-05-23 01:52:53] + interpreter=/bin/bash
[2024-05-23 01:52:53] + '[' /bin/bash = /usr/bin/env ']'
[2024-05-23 01:52:53] + '[' x/bin/bash = x ']'
[2024-05-23 01:52:53] + type /bin/bash
[2024-05-23 01:52:53] + '[' xgnutime = xgnutime ']'
[2024-05-23 01:52:53] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.5.4 -z -t --piloturl local --mute --container
[2024-05-23 01:52:53] + RESULT=2
[2024-05-23 01:52:53] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag
[2024-05-23 01:52:53] ++ grep domain_name init_data.xml
[2024-05-23 01:52:53] ++ awk -F '<' '{print $1}'
[2024-05-23 01:52:53] ++ sed -e 's# #_#g'
[2024-05-23 01:52:53] ++ awk -F '>' '{print $2}'
[2024-05-23 01:52:53] + hostname=skurut32.grid.cesnet.cz
[2024-05-23 01:52:53] ++ grep user_name init_data.xml
[2024-05-23 01:52:53] ++ awk -F '<' '{print $1}'
[2024-05-23 01:52:53] ++ awk -F '>' '{print $2}'
[2024-05-23 01:52:53] ++ sed -e 's# #_#g'
[2024-05-23 01:52:53] + username=praguelcg2
[2024-05-23 01:52:53] + nodename=praguelcg2@skurut32.grid.cesnet.cz
[2024-05-23 01:52:53] + echo nodename=praguelcg2@skurut32.grid.cesnet.cz
[2024-05-23 01:52:53] + '[' -n 4 ']'
[2024-05-23 01:52:53] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/1/Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag
[2024-05-23 01:52:53] + echo exitcode=2
[2024-05-23 01:52:53] + runtimeenvironments=
[2024-05-23 01:52:53] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-05-23 01:52:53] + RTE_function_0 2
[2024-05-23 01:52:53] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-23 01:52:53] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-05-23 01:52:53] + export BOINC_APP=ATLAS
[2024-05-23 01:52:53] + BOINC_APP=ATLAS
[2024-05-23 01:52:53] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-23 01:52:53] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-05-23 01:52:53] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-23 01:52:53] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-05-23 01:52:53] + '[' -z 2 ']'
[2024-05-23 01:52:53] + '[' 2 == 1 ']'
[2024-05-23 01:52:53] + '[' 0 -ne 0 ']'
[2024-05-23 01:52:53] + echo 'zip all output files'
[2024-05-23 01:52:53] + flist='*.diag '
[2024-05-23 01:52:53] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-23 01:52:53] + '[' -e ./heartbeat.json ']'
[2024-05-23 01:52:53] + flist='*.diag  ./heartbeat.json'
[2024-05-23 01:52:53] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-23 01:52:53] + '[' -e ./output.list ']'
[2024-05-23 01:52:53] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-23 01:52:53] + '[' -e ./log.38776104._012446.job.log.1 ']'
[2024-05-23 01:52:53] + flist='*.diag  ./heartbeat.json ./log.38776104._012446.job.log.1'
[2024-05-23 01:52:53] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-23 01:52:53] + '[' -e ./log.38776104._012446.job.log.1 ']'
[2024-05-23 01:52:53] + flist='*.diag  ./heartbeat.json ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1'
[2024-05-23 01:52:53] + for f in ./heartbeat.json ./output.list ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1 ./gmlog/
[2024-05-23 01:52:53] + '[' -e ./gmlog/ ']'
[2024-05-23 01:52:53] + '[' -f output.list ']'
[2024-05-23 01:52:53] + tar cvf result.tar.gz Q8TMDmaL6R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfeQKDmH1aIWm.diag ./heartbeat.json ./log.38776104._012446.job.log.1 ./log.38776104._012446.job.log.1
[2024-05-23 01:52:53] + '[' xgnutime = xcgroup ']'
[2024-05-23 01:52:53] + '[' -n '' ']'
[2024-05-23 01:52:53] + '[' -n '' ']'
[2024-05-23 01:52:53] ++ date +%s
[2024-05-23 01:52:53] + ACCOUNTING_ENDTIME=1716420356
[2024-05-23 01:52:53] ++ date -d '1970-01-01 UTC 1716420168 seconds' +%Y%m%d%H%M%SZ
[2024-05-23 01:52:53] + echo LRMSStartTime=20240523012248Z
[2024-05-23 01:52:53] ++ date -d '1970-01-01 UTC 1716420356 seconds' +%Y%m%d%H%M%SZ
[2024-05-23 01:52:53] + echo LRMSEndTime=20240523012556Z
[2024-05-23 01:52:53] + echo walltime=188
[2024-05-23 01:52:53] + echo exitcode=2
[2024-05-23 01:52:53] + exit 2
[2024-05-23 01:52:53] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-05-23 01:52:53] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-05-23 01:52:53] ./pilot3/pilot/util/loggingsupport.py
[2024-05-23 01:52:53] ./pilot3/pilot/util/realtimelogger.py
[2024-05-23 01:52:53] ./log.38776104._012446.job.log.1
[2024-05-23 01:52:53] ./runtime_log.err
[2024-05-23 01:52:53] ./PanDA_Pilot-6207804316/PoolFileCatalog.xml
[2024-05-23 01:52:53] ./PanDA_Pilot-6207804316/log.EVNTtoHITS
[2024-05-23 01:52:53] ./PanDA_Pilot-6207804316/prmon.log
[2024-05-23 01:52:53] ./PanDA_Pilot-6207804316/pilotlog.txt
[2024-05-23 01:52:53] ./runtime_log
[2024-05-23 01:52:53] ./log.38776104._012446.job.log.tgz.1
[2024-05-23 01:52:53] ./pilotlog.txt
02:04:36 (1685553): run_atlas exited; CPU time 13.142454
02:04:36 (1685553): app exit status: 0x1
02:04:36 (1685553): called boinc_finish(195)

</stderr_txt>
]]>

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