Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-21 09:34:04 (15088): Detected: vboxwrapper 26206
2024-05-21 09:34:04 (15088): Detected: BOINC client v7.22.2
2024-05-21 09:34:05 (15088): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2024-05-21 09:34:06 (15088): Successfully copied 'init_data.xml' to the shared directory.
2024-05-21 09:34:06 (15088): Create VM. (boinc_e12fdece19a7894a, slot#0)
2024-05-21 09:34:07 (15088): Setting Memory Size for VM. (4800MB)
2024-05-21 09:34:07 (15088): Setting CPU Count for VM. (8)
2024-05-21 09:34:07 (15088): Setting Chipset Options for VM.
2024-05-21 09:34:08 (15088): Setting Graphics Controller Options for VM.
2024-05-21 09:34:08 (15088): Setting Boot Options for VM.
2024-05-21 09:34:08 (15088): Setting Network Configuration for NAT.
2024-05-21 09:34:08 (15088): Enabling VM Network Access.
2024-05-21 09:34:09 (15088): Disabling USB Support for VM.
2024-05-21 09:34:09 (15088): Disabling COM Port Support for VM.
2024-05-21 09:34:10 (15088): Disabling LPT Port Support for VM.
2024-05-21 09:34:10 (15088): Disabling Audio Support for VM.
2024-05-21 09:34:10 (15088): Disabling Clipboard Support for VM.
2024-05-21 09:34:10 (15088): Disabling Drag and Drop Support for VM.
2024-05-21 09:34:11 (15088): Adding storage controller(s) to VM.
2024-05-21 09:34:11 (15088): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-21 09:34:14 (15088): Adding VirtualBox Guest Additions to VM.
2024-05-21 09:34:14 (15088): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-21 09:34:14 (15088): forwarding host port 49206 to guest port 80
2024-05-21 09:34:15 (15088): Enabling remote desktop for VM.
2024-05-21 09:34:15 (15088): Required extension pack not installed, remote desktop not enabled.
2024-05-21 09:34:15 (15088): Enabling shared directory for VM.
2024-05-21 09:34:15 (15088): Starting VM using VBoxManage interface. (boinc_e12fdece19a7894a, slot#0)
2024-05-21 09:34:20 (15088): Successfully started VM. (PID = '12912')
2024-05-21 09:34:20 (15088): Reporting VM Process ID to BOINC.
2024-05-21 09:34:20 (15088): Guest Log: BIOS: VirtualBox 7.0.8
2024-05-21 09:34:20 (15088): Guest Log: CPUID EDX: 0x178bfbff
2024-05-21 09:34:20 (15088): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-21 09:34:20 (15088): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-21 09:34:20 (15088): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-21 09:34:20 (15088): Detected: Web Application Enabled (http://localhost:49206)
2024-05-21 09:34:20 (15088): Preference change detected
2024-05-21 09:34:20 (15088): Setting CPU throttle for VM. (85%)
2024-05-21 09:34:21 (15088): Setting network throttle for VM. (1000KB)
2024-05-21 09:34:21 (15088): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-21 09:34:22 (15088): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-21 09:34:22 (15088): Guest Log: BIOS: Booting from Hard Disk...
2024-05-21 09:34:25 (15088): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-21 09:34:25 (15088): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-21 09:34:25 (15088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-21 09:34:33 (15088): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-21 09:34:33 (15088): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-21 09:34:41 (15088): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000067 main     Log opened 2024-05-21T09:34:38.939871000Z
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000128 main     OS Product: Linux
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000148 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000163 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000177 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000178 main     Process ID: 1365
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000178 main     Package type: LINUX_64BITS_GENERIC
2024-05-21 09:34:41 (15088): Guest Log: 00:00:00.000542 main     5.2.32 r132073 started. Verbose level = 0
2024-05-21 09:34:41 (15088): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-21 09:34:41 (15088): Guest Log: [INFO] Mounting shared directory
2024-05-21 09:34:41 (15088): Guest Log: [INFO] Checking for init_data.xml
2024-05-21 09:34:49 (15088): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-21 09:34:49 (15088): Guest Log: [INFO] Detected branch: prod
2024-05-21 09:34:49 (15088): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-21 09:34:49 (15088): Guest Log: Copying input files
2024-05-21 09:34:51 (15088): Guest Log: 00:00:10.003739 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 040 401 000ns (GuestNow=1 716 273 290 901 554 000 ns GuestLast=1 716 284 078 941 955 000 ns fSetTimeLastLoop=true )
2024-05-21 09:34:54 (15088): Guest Log: Copied input files into RunAtlas.
2024-05-21 09:34:54 (15088): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-21 09:34:54 (15088): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-21 09:34:54 (15088): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-21 09:34:54 (15088): Guest Log: Further information can be found at the LHC@home message board.
2024-05-21 09:35:06 (15088): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-21 09:35:06 (15088): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-21 09:35:06 (15088): Guest Log: 2.6.3.0 1642 0 30304 132978 4 1 3119304 4096000 0 65024 0 0 n/a 1042 546 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-21 09:35:08 (15088): Guest Log: copied the webapp to /var/www
2024-05-21 09:35:08 (15088): Guest Log: ATHENA_PROC_NUMBER=8
2024-05-21 09:35:08 (15088): Guest Log: ATHENA_CORE_NUMBER=8
2024-05-21 09:35:08 (15088): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-21 09:35:08 (15088): Guest Log:  *** Starting ATLAS job. (PandaID=6207769909 taskID=38920987) ***
2024-05-21 10:27:21 (15088): VM state change detected. (old = 'running', new = 'paused')
2024-05-21 10:27:41 (15088): VM state change detected. (old = 'paused', new = 'running')
2024-05-21 11:06:13 (15088): VM state change detected. (old = 'running', new = 'paused')
2024-05-21 11:06:33 (15088): VM state change detected. (old = 'paused', new = 'running')
2024-05-21 11:15:05 (15088): Status Report: Elapsed Time: '6000.000000'
2024-05-21 11:15:05 (15088): Status Report: CPU Time: '33757.312500'
2024-05-21 11:17:44 (15088): VM state change detected. (old = 'running', new = 'paused')
2024-05-21 11:18:04 (15088): VM state change detected. (old = 'paused', new = 'running')
2024-05-21 12:55:28 (15088): Status Report: Elapsed Time: '12000.000000'
2024-05-21 12:55:28 (15088): Status Report: CPU Time: '76895.656250'
2024-05-21 13:15:18 (15088): Guest Log:  *** Job finished ***
2024-05-21 13:15:18 (15088): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:12,700 | INFO     | [job] queue monitor thread has finished
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:12,945 | INFO     | [data] copytool_out thread has finished
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:16,449 | INFO     | [data] queue_monitor thread has finished
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:16,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672309057344)>', '<ExcThread(monitor, started 139671556302592)>']
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:17,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:17,501 | INFO     | [monitor] control thread has ended
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,747 | INFO     | all workflow threads have been joined
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,748 | INFO     | end of generic workflow (traces error code: 0)
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,748 | INFO     | traces error code: 0
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,748 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,831 [wrapper] ==== pilot stdout END ====
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,833 [wrapper] ==== wrapper stdout RESUME ====
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,836 [wrapper] pilotpid: 6560
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,837 [wrapper] Pilot exit status: 0
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,963 [wrapper] pandaids: 6207769909
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,978 [wrapper] cleanup: SIGTERM to supervisor_pilot 13711 6561
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,980 [wrapper] Test setup, not cleaning
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,983 [wrapper] ==== wrapper stdout END ====
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,984 [wrapper] ==== wrapper stderr END ====
2024-05-21 13:15:18 (15088): Guest Log: 2024-05-21 10:14:21,989 [wrapper] apfmon messages muted
2024-05-21 13:15:18 (15088): Guest Log:  *** Error codes and diagnostics ***
2024-05-21 13:15:18 (15088): Guest Log:     "exeErrorCode": 0,
2024-05-21 13:15:18 (15088): Guest Log:     "exeErrorDiag": "",
2024-05-21 13:15:18 (15088): Guest Log:     "pilotErrorCode": 0,
2024-05-21 13:15:18 (15088): Guest Log:     "pilotErrorDiag": "",
2024-05-21 13:15:18 (15088): Guest Log:  *** Listing of results directory ***
2024-05-21 13:15:18 (15088): Guest Log: total 333320
2024-05-21 13:15:18 (15088): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 17 04:34 pilot3.tar.gz
2024-05-21 13:15:18 (15088): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 17 04:37 queuedata.json
2024-05-21 13:15:18 (15088): Guest Log: -rwx------. 1 atlas atlas     32251 May 17 04:38 runpilot2-wrapper.sh
2024-05-21 13:15:18 (15088): Guest Log: -rwxr-xr-x. 1 atlas atlas      9264 May 21 06:34 init_data.xml
2024-05-21 13:15:18 (15088): Guest Log: -rwxr-xr-x. 1 atlas atlas    480004 May 21 06:34 input.tar.gz
2024-05-21 13:15:18 (15088): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 21 06:34 start_atlas.sh
2024-05-21 13:15:18 (15088): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 21 06:34 EVNT.38776170._000118.pool.root.1 -> /data/./ATLAS.root_0
2024-05-21 13:15:18 (15088): Guest Log: -rw-r--r--. 1 atlas atlas      2616 May 21 06:35 pandaJob.out
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas       424 May 21 06:35 setup.sh.local
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas   1013555 May 21 06:35 agis_schedconf.cvmfs.json
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas   1324701 May 21 06:36 cric_ddmendpoints.json
2024-05-21 13:15:18 (15088): Guest Log: drwx------. 4 atlas atlas      4096 May 21 06:36 pilot3
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas 334910692 May 21 10:13 HITS.38920987._003119.pool.root.1
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas        95 May 21 10:13 pilot_heartbeat.json
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas      1026 May 21 10:13 memory_monitor_summary.json
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas         0 May 21 10:13 agis_ddmendpoints.agis.ALL.json
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas    383949 May 21 10:13 log.38920987._003119.job.log.tgz.1
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas      7710 May 21 10:14 heartbeat.json
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas      4271 May 21 10:14 pilotlog.txt
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas   1087563 May 21 10:14 log.38920987._003119.job.log.1
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas       357 May 21 10:14 output.list
2024-05-21 13:15:18 (15088): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 21 10:14 runtime_log
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas   1495040 May 21 10:14 result.tar.gz
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas       637 May 21 10:14 yy5MDmoX4R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmyXQKDmKqqWen.diag
2024-05-21 13:15:18 (15088): Guest Log: -rw-r--r--. 1 atlas atlas     10901 May 21 10:14 runtime_log.err
2024-05-21 13:15:18 (15088): Guest Log: Looking for outputfile HITS.38920987._003119.pool.root.1
2024-05-21 13:15:18 (15088): Guest Log: HITS file was successfully produced
2024-05-21 13:15:18 (15088): Guest Log: -rw-------. 1 atlas atlas 334910692 May 21 10:13 /home/atlas/RunAtlas/HITS.38920987._003119.pool.root.1
2024-05-21 13:15:18 (15088): Guest Log: Successfully finished the ATLAS job!
2024-05-21 13:15:18 (15088): Guest Log: Copying the results back to the shared directory!
2024-05-21 13:15:19 (15088): Guest Log:  *** Contents of shared directory: ***
2024-05-21 13:15:19 (15088): Guest Log: total 953280
2024-05-21 13:15:19 (15088): Guest Log: -rwxrwxrwx. 1 root root 639230093 May 21 06:34 ATLAS.root_0
2024-05-21 13:15:19 (15088): Guest Log: -rwxrwxrwx. 1 root root 334910692 May 21  2024 HITS.pool.root.1
2024-05-21 13:15:19 (15088): Guest Log: -rwxrwxrwx. 1 root root      9264 May 21 06:34 init_data.xml
2024-05-21 13:15:19 (15088): Guest Log: -rwxrwxrwx. 1 root root    480004 May 17 04:52 input.tar.gz
2024-05-21 13:15:19 (15088): Guest Log: -rwxrwxrwx. 1 root root   1495040 May 21  2024 result.tar.gz
2024-05-21 13:15:19 (15088): Guest Log: -rwxrwxrwx. 1 root root     17537 May 17 04:52 start_atlas.sh
2024-05-21 13:15:19 (15088): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-21 13:15:19 (15088): VM Completion File Detected.
2024-05-21 13:15:19 (15088): Powering off VM.
2024-05-21 13:15:20 (15088): Successfully stopped VM.
2024-05-21 13:15:20 (15088): Deregistering VM. (boinc_e12fdece19a7894a, slot#0)
2024-05-21 13:15:20 (15088): Removing network bandwidth throttle group from VM.
2024-05-21 13:15:20 (15088): Removing VM from VirtualBox.
13:15:25 (15088): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN