Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:50:49 (3287702): wrapper (7.7.26015): starting
03:50:49 (3287702): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 03:50:49] Arguments: --nthreads 4
[2024-05-19 03:50:49] Threads: 4
[2024-05-19 03:50:49] Checking for CVMFS
[2024-05-19 03:50:49] No cvmfs_config command found, will try listing directly
[2024-05-19 03:50:49] CVMFS is ok
[2024-05-19 03:50:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 03:50:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 03:50:49] Further information can be found at the LHC@home message board.
[2024-05-19 03:50:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 03:50:49] Checking for apptainer binary...
[2024-05-19 03:50:49] which: no apptainer in ((null))
[2024-05-19 03:50:49] apptainer is not installed, using version from CVMFS
[2024-05-19 03:50:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 03:50:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-05-19 03:50:50] apptainer works
[2024-05-19 03:50:50] Set ATHENA_PROC_NUMBER=4
[2024-05-19 03:50:50] Set ATHENA_CORE_NUMBER=4
[2024-05-19 03:50:50] Starting ATLAS job with PandaID=6207710861
[2024-05-19 03:50:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 06:55:33]  *** The last 200 lines of the pilot log: ***
[2024-05-19 06:55:33] 2024-05-19 04:55:11,167 | INFO     | chi2: 3.9864988735702758
[2024-05-19 06:55:33] 2024-05-19 04:55:11,167 | INFO     | model: linear, x: [1716083483.0, 1716083544.0, 1716083605.0, 1716083666.0, 1716083727.0, 1716083788.0, 1716083849.0, 1716083910.0, 1716083971.0, 1716084032.0, 1716
[2024-05-19 06:55:33] 2024-05-19 04:55:11,168 | INFO     | sum of square deviations: 1690450300.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,169 | INFO     | sum of deviations: 77585345662.49998
[2024-05-19 06:55:33] 2024-05-19 04:55:11,169 | INFO     | mean x: 1716088820.5
[2024-05-19 06:55:33] 2024-05-19 04:55:11,169 | INFO     | mean y: 2285531.153409091
[2024-05-19 06:55:33] 2024-05-19 04:55:11,169 | INFO     | -- intersect: -78759772321.74199
[2024-05-19 06:55:33] 2024-05-19 04:55:11,169 | INFO     | intersect: -78759772321.74199
[2024-05-19 06:55:33] 2024-05-19 04:55:11,169 | INFO     | chi2: 3.9857383957624597
[2024-05-19 06:55:33] 2024-05-19 04:55:11,170 | INFO     | current chi2=3.9857383957624597 (change=0.01907633319196189 %)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,170 | INFO     | right removable region: 175
[2024-05-19 06:55:33] 2024-05-19 04:55:11,170 | INFO     | model: linear, x: [1716083788.0, 1716083849.0, 1716083910.0, 1716083971.0, 1716084032.0, 1716084093.0, 1716084154.0, 1716084215.0, 1716084276.0, 1716084337.0, 1716
[2024-05-19 06:55:33] 2024-05-19 04:55:11,170 | INFO     | sum of square deviations: 1690450300.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,171 | INFO     | sum of deviations: 38142051665.49999
[2024-05-19 06:55:33] 2024-05-19 04:55:11,171 | INFO     | mean x: 1716089125.5
[2024-05-19 06:55:33] 2024-05-19 04:55:11,172 | INFO     | mean y: 2331117.085227273
[2024-05-19 06:55:33] 2024-05-19 04:55:11,172 | INFO     | -- intersect: -38718215761.710144
[2024-05-19 06:55:33] 2024-05-19 04:55:11,172 | INFO     | intersect: -38718215761.710144
[2024-05-19 06:55:33] 2024-05-19 04:55:11,172 | INFO     | chi2: 1.4843673010015737
[2024-05-19 06:55:33] 2024-05-19 04:55:11,172 | INFO     | current chi2=1.4843673010015737 (change=62.765139334601486 %)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,172 | INFO     | model: linear, x: [1716084093.0, 1716084154.0, 1716084215.0, 1716084276.0, 1716084337.0, 1716084398.0, 1716084459.0, 1716084520.0, 1716084581.0, 1716084642.0, 1716
[2024-05-19 06:55:33] 2024-05-19 04:55:11,173 | INFO     | sum of square deviations: 1550429070.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | sum of deviations: 4712751237.000001
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | mean x: 1716089278.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | mean y: 2367531.4385964912
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | -- intersect: -5213931636.4407425
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | intersect: -5213931636.4407425
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | chi2: 0.033506822643567864
[2024-05-19 06:55:33] 2024-05-19 04:55:11,174 | INFO     | current chi2=0.033506822643567864 (change=97.7426865560189 %)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,175 | INFO     | model: linear, x: [1716084398.0, 1716084459.0, 1716084520.0, 1716084581.0, 1716084642.0, 1716084703.0, 1716084764.0, 1716084825.0, 1716084886.0, 1716084947.0, 1716
[2024-05-19 06:55:33] 2024-05-19 04:55:11,175 | INFO     | sum of square deviations: 1418361477.5
[2024-05-19 06:55:33] 2024-05-19 04:55:11,176 | INFO     | sum of deviations: 1551181047.5
[2024-05-19 06:55:33] 2024-05-19 04:55:11,176 | INFO     | mean x: 1716089430.5
[2024-05-19 06:55:33] 2024-05-19 04:55:11,176 | INFO     | mean y: 2371112.801204819
[2024-05-19 06:55:33] 2024-05-19 04:55:11,176 | INFO     | -- intersect: -1874418015.1005492
[2024-05-19 06:55:33] 2024-05-19 04:55:11,176 | INFO     | intersect: -1874418015.1005492
[2024-05-19 06:55:33] 2024-05-19 04:55:11,177 | INFO     | chi2: 0.0011257705931929536
[2024-05-19 06:55:33] 2024-05-19 04:55:11,177 | INFO     | current chi2=0.0011257705931929536 (change=96.64017503190784 %)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,177 | INFO     | model: linear, x: [1716084703.0, 1716084764.0, 1716084825.0, 1716084886.0, 1716084947.0, 1716085008.0, 1716085069.0, 1716085130.0, 1716085191.0, 1716085252.0, 1716
[2024-05-19 06:55:33] 2024-05-19 04:55:11,177 | INFO     | sum of square deviations: 1294014960.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,178 | INFO     | sum of deviations: 1650925959.9999998
[2024-05-19 06:55:33] 2024-05-19 04:55:11,178 | INFO     | mean x: 1716089583.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,178 | INFO     | mean y: 2370992.7701863353
[2024-05-19 06:55:33] 2024-05-19 04:55:11,178 | INFO     | -- intersect: -2187044840.7687664
[2024-05-19 06:55:33] 2024-05-19 04:55:11,178 | INFO     | intersect: -2187044840.7687664
[2024-05-19 06:55:33] 2024-05-19 04:55:11,179 | INFO     | chi2: 0.001003690531697359
[2024-05-19 06:55:33] 2024-05-19 04:55:11,179 | INFO     | current chi2=0.001003690531697359 (change=10.844133097254423 %)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,179 | INFO     | left removable region: 40
[2024-05-19 06:55:33] 2024-05-19 04:55:11,179 | INFO     | model: linear, x: [1716085923.0, 1716085984.0, 1716086045.0, 1716086106.0, 1716086167.0, 1716086228.0, 1716086289.0, 1716086350.0, 1716086411.0, 1716086472.0, 1716
[2024-05-19 06:55:33] 2024-05-19 04:55:11,179 | INFO     | sum of square deviations: 762879420.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,180 | INFO     | sum of deviations: 912774720.0000004
[2024-05-19 06:55:33] 2024-05-19 04:55:11,180 | INFO     | mean x: 1716090010.0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,181 | INFO     | mean y: 2371618.7925925925
[2024-05-19 06:55:33] 2024-05-19 04:55:11,181 | INFO     | -- intersect: -2050906444.9577022
[2024-05-19 06:55:33] 2024-05-19 04:55:11,181 | INFO     | intersect: -2050906444.9577022
[2024-05-19 06:55:33] 2024-05-19 04:55:11,181 | INFO     | chi2: 8.208451136362066e-05
[2024-05-19 06:55:33] 2024-05-19 04:55:11,181 | INFO     | -- intersect: -2050906444.9577022
[2024-05-19 06:55:33] 2024-05-19 04:55:11,181 | INFO     | current memory leak: 1.20 B/s (using 135 data points, chi2=0.00)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | ..............................
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . Timing measurements:
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . get job = 0 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . initial setup = 1 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . payload setup = 4 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . stage-in = 0 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . payload execution = 11018 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . stage-out = 0 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | . log creation = 0 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,182 | INFO     | ..............................
[2024-05-19 06:55:33] 2024-05-19 04:55:11,455 | INFO     | 
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | job summary report
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | --------------------------------------------------
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | PanDA job id: 6207710861
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | task id: 38920982
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | errors: (none)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | pilot state: finished 
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | transexitcode: 0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | exeerrorcode: 0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | exeerrordiag: 
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | exitcode: 0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | exitmsg: OK
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | cpuconsumptiontime: 41382 s
[2024-05-19 06:55:33] 2024-05-19 04:55:11,456 | INFO     | nevents: 400
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | neventsw: 0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | pid: 3299940
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | pgrp: 3299940
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | corecount: 4
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | event service: False
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | sizes: {0: 2390727, 1: 2392275, 5: 2392481, 12: 2392537, 11027: 2421650, 11028: 2430634, 11030: 2430818, 11037: 2430988}
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | --------------------------------------------------
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | 
[2024-05-19 06:55:33] 2024-05-19 04:55:11,457 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2024-05-19 06:55:33] 2024-05-19 04:55:11,477 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,477 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,477 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,477 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,478 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | job 6207710861 has completed (purged errors)
[2024-05-19 06:55:33] 2024-05-19 04:55:11,479 | INFO     | overall cleanup function is called
[2024-05-19 06:55:33] 2024-05-19 04:55:12,482 | INFO     | --- collectZombieJob: --- 10, [3299940]
[2024-05-19 06:55:33] 2024-05-19 04:55:12,482 | INFO     | zombie collector waiting for pid 3299940
[2024-05-19 06:55:33] 2024-05-19 04:55:12,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 06:55:33] 2024-05-19 04:55:13,488 | INFO     | collected zombie processes
[2024-05-19 06:55:33] 2024-05-19 04:55:13,488 | INFO     | will now attempt to kill all subprocesses of pid=3299940
[2024-05-19 06:55:33] 2024-05-19 04:55:13,645 | INFO     | process IDs to be killed: [3299940] (in reverse order)
[2024-05-19 06:55:33] 2024-05-19 04:55:13,818 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 06:55:33] 2024-05-19 04:55:13,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 06:55:33] 2024-05-19 04:55:13,838 | INFO     | did not find any defunct processes belonging to 3299940
[2024-05-19 06:55:33] 2024-05-19 04:55:13,854 | INFO     | did not find any defunct processes belonging to 3299940
[2024-05-19 06:55:33] 2024-05-19 04:55:13,854 | INFO     | ready for new job
[2024-05-19 06:55:33] 2024-05-19 04:55:13,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 06:55:33] 2024-05-19 04:55:13,857 | INFO     | *************************************
[2024-05-19 06:55:33] 2024-05-19 04:55:13,857 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 06:55:33] 2024-05-19 04:55:13,857 | INFO     | *************************************
[2024-05-19 06:55:33] 2024-05-19 04:55:13,858 | INFO     | 
[2024-05-19 06:55:33] 2024-05-19 04:55:13,866 | INFO     | architecture information:
[2024-05-19 06:55:33] 2024-05-19 04:55:13,867 | INFO     | executing command: cat /etc/os-release
[2024-05-19 06:55:33] 2024-05-19 04:55:13,883 | INFO     | cat /etc/os-release:
[2024-05-19 06:55:33] NAME="CentOS Linux"
[2024-05-19 06:55:33] VERSION="7 (Core)"
[2024-05-19 06:55:33] ID="centos"
[2024-05-19 06:55:33] ID_LIKE="rhel fedora"
[2024-05-19 06:55:33] VERSION_ID="7"
[2024-05-19 06:55:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 06:55:33] ANSI_COLOR="0;31"
[2024-05-19 06:55:33] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 06:55:33] HOME_URL="https://www.centos.org/"
[2024-05-19 06:55:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 06:55:33] 
[2024-05-19 06:55:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 06:55:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 06:55:33] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 06:55:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 06:55:33] 
[2024-05-19 06:55:33] 2024-05-19 04:55:13,884 | INFO     | *************************************
[2024-05-19 06:55:33] 2024-05-19 04:55:14,387 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2024-05-19 06:55:33] 2024-05-19 04:55:14,405 | INFO     | sufficient remaining disk space (2976319012864 B)
[2024-05-19 06:55:33] 2024-05-19 04:55:14,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 06:55:33] 2024-05-19 04:55:14,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 06:55:33] 2024-05-19 04:55:14,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 06:55:33] 2024-05-19 04:55:14,406 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 06:55:33] 2024-05-19 04:55:14,406 | INFO     | aborting loop
[2024-05-19 06:55:33] 2024-05-19 04:55:14,407 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 06:55:33] 2024-05-19 04:55:14,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 06:55:33] 2024-05-19 04:55:14,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 06:55:33] 2024-05-19 04:55:14,590 | INFO     | all job control threads have been joined
[2024-05-19 06:55:33] 2024-05-19 04:55:14,741 | INFO     | all data control threads have been joined
[2024-05-19 06:55:33] 2024-05-19 04:55:14,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 06:55:33] 2024-05-19 04:55:14,800 | INFO     | all payload control threads have been joined
[2024-05-19 06:55:33] 2024-05-19 04:55:15,316 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 06:55:33] 2024-05-19 04:55:15,411 | INFO     | [job] retrieve thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,415 | INFO     | [job] job monitor thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,558 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,596 | INFO     | [job] control thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,620 | INFO     | [payload] failed_post thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,691 | INFO     | [job] validate thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,746 | INFO     | [data] control thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,806 | INFO     | [payload] control thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,876 | INFO     | [data] copytool_in thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:15,937 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:16,232 | INFO     | [payload] validate_post thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:16,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 06:55:33] 2024-05-19 04:55:16,750 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:17,294 | INFO     | [job] queue monitor thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:17,322 | INFO     | [data] copytool_out thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:18,789 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:24,624 | INFO     | job.realtimelogging is not enabled
[2024-05-19 06:55:33] 2024-05-19 04:55:25,629 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 06:55:33] 2024-05-19 04:55:27,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47493130093632)>', '<ExcThread(monitor, started 47493309748992)>']
[2024-05-19 06:55:33] 2024-05-19 04:55:28,484 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 06:55:33] 2024-05-19 04:55:28,484 | INFO     | [monitor] control thread has ended
[2024-05-19 06:55:33] 2024-05-19 04:55:32,686 | INFO     | all workflow threads have been joined
[2024-05-19 06:55:33] 2024-05-19 04:55:32,687 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 06:55:33] 2024-05-19 04:55:32,687 | INFO     | traces error code: 0
[2024-05-19 06:55:33] 2024-05-19 04:55:32,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 06:55:33] 2024-05-19 04:55:32,787 [wrapper] ==== pilot stdout END ====
[2024-05-19 06:55:33] 2024-05-19 04:55:32,790 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 06:55:33] 2024-05-19 04:55:32,793 [wrapper] pilotpid: 3292378
[2024-05-19 06:55:33] 2024-05-19 04:55:32,795 [wrapper] Pilot exit status: 0
[2024-05-19 06:55:33] 2024-05-19 04:55:32,803 [wrapper] pandaids: 6207710861
[2024-05-19 06:55:33] 2024-05-19 04:55:32,927 [wrapper] cleanup: SIGTERM to supervisor_pilot 3885050 3292379
[2024-05-19 06:55:33] 2024-05-19 04:55:32,930 [wrapper] Test setup, not cleaning
[2024-05-19 06:55:33] 2024-05-19 04:55:32,932 [wrapper] ==== wrapper stdout END ====
[2024-05-19 06:55:33] 2024-05-19 04:55:32,933 [wrapper] ==== wrapper stderr END ====
[2024-05-19 06:55:33] 2024-05-19 04:55:32,937 [wrapper] apfmon messages muted
[2024-05-19 06:55:33]  *** Error codes and diagnostics ***
[2024-05-19 06:55:33]     "exeErrorCode": 0,
[2024-05-19 06:55:33]     "exeErrorDiag": "",
[2024-05-19 06:55:33]     "pilotErrorCode": 0,
[2024-05-19 06:55:33]     "pilotErrorDiag": "",
[2024-05-19 06:55:33]  *** Listing of results directory ***
[2024-05-19 06:55:33] total 926216
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc    467845 May 17 05:03 pilot3.tar.gz
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc      5633 May 17 05:05 queuedata.json
[2024-05-19 06:55:33] -rwx------ 1 boinc boinc     32251 May 17 05:05 runpilot2-wrapper.sh
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc       100 May 19 03:50 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 06:55:33] -rwxr-xr-x 1 boinc boinc      7986 May 19 03:50 run_atlas
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc       105 May 19 03:50 job.xml
[2024-05-19 06:55:33] -rw-r--r-- 2 boinc boinc 630311372 May 19 03:50 EVNT.38776160._000058.pool.root.1
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc      6645 May 19 03:50 init_data.xml
[2024-05-19 06:55:33] -rw-r--r-- 2 boinc boinc     17537 May 19 03:50 start_atlas.sh
[2024-05-19 06:55:33] drwxrwx--x 2 boinc boinc      4096 May 19 03:50 shared
[2024-05-19 06:55:33] -rw-r--r-- 2 boinc boinc    480007 May 19 03:50 input.tar.gz
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc         0 May 19 03:50 boinc_lockfile
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc      2625 May 19 03:50 pandaJob.out
[2024-05-19 06:55:33] -rw------- 1 boinc boinc       424 May 19 03:50 setup.sh.local
[2024-05-19 06:55:33] -rw------- 1 boinc boinc   1013712 May 19 03:50 agis_schedconf.cvmfs.json
[2024-05-19 06:55:33] -rw------- 1 boinc boinc   1324701 May 19 03:50 cric_ddmendpoints.json
[2024-05-19 06:55:33] drwx------ 4 boinc boinc      4096 May 19 03:50 pilot3
[2024-05-19 06:55:33] -rw------- 1 boinc boinc 311618211 May 19 06:54 HITS.38920982._003071.pool.root.1
[2024-05-19 06:55:33] -rw------- 1 boinc boinc        95 May 19 06:54 pilot_heartbeat.json
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc       532 May 19 06:54 boinc_task_state.xml
[2024-05-19 06:55:33] -rw------- 1 boinc boinc      1041 May 19 06:54 memory_monitor_summary.json
[2024-05-19 06:55:33] -rw------- 1 boinc boinc         0 May 19 06:55 agis_ddmendpoints.agis.ALL.json
[2024-05-19 06:55:33] -rw------- 1 boinc boinc    311961 May 19 06:55 log.38920982._003071.job.log.tgz.1
[2024-05-19 06:55:33] -rw------- 1 boinc boinc      7718 May 19 06:55 heartbeat.json
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc        28 May 19 06:55 wrapper_checkpoint.txt
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc      8192 May 19 06:55 boinc_mmap_file
[2024-05-19 06:55:33] -rw------- 1 boinc boinc      4418 May 19 06:55 pilotlog.txt
[2024-05-19 06:55:33] -rw------- 1 boinc boinc   1179194 May 19 06:55 log.38920982._003071.job.log.1
[2024-05-19 06:55:33] -rw------- 1 boinc boinc       357 May 19 06:55 output.list
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc       620 May 19 06:55 runtime_log
[2024-05-19 06:55:33] -rw------- 1 boinc boinc   1515520 May 19 06:55 result.tar.gz
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc     11429 May 19 06:55 runtime_log.err
[2024-05-19 06:55:33] -rw------- 1 boinc boinc       659 May 19 06:55 MgEMDme52R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmaRQKDmMVSm2n.diag
[2024-05-19 06:55:33] -rw-r--r-- 1 boinc boinc     21392 May 19 06:55 stderr.txt
[2024-05-19 06:55:33] HITS file was successfully produced:
[2024-05-19 06:55:33] -rw------- 1 boinc boinc 311618211 May 19 06:54 shared/HITS.pool.root.1
[2024-05-19 06:55:33]  *** Contents of shared directory: ***
[2024-05-19 06:55:33] total 921836
[2024-05-19 06:55:33] -rw-r--r-- 2 boinc boinc 630311372 May 19 03:50 ATLAS.root_0
[2024-05-19 06:55:33] -rw-r--r-- 2 boinc boinc     17537 May 19 03:50 start_atlas.sh
[2024-05-19 06:55:33] -rw-r--r-- 2 boinc boinc    480007 May 19 03:50 input.tar.gz
[2024-05-19 06:55:33] -rw------- 1 boinc boinc 311618211 May 19 06:54 HITS.pool.root.1
[2024-05-19 06:55:33] -rw------- 1 boinc boinc   1515520 May 19 06:55 result.tar.gz
06:55:34 (3287702): run_atlas exited; CPU time 41126.038382
06:55:34 (3287702): called boinc_finish(0)

</stderr_txt>
]]>

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