Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-20 16:18:29 (4200): Detected: vboxwrapper 26206
2024-05-20 16:18:29 (4200): Detected: BOINC client v7.22.2
2024-05-20 16:18:30 (4200): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2024-05-20 16:18:30 (4200): Successfully copied 'init_data.xml' to the shared directory.
2024-05-20 16:18:31 (4200): Create VM. (boinc_92f893a2fea35958, slot#0)
2024-05-20 16:18:32 (4200): Setting Memory Size for VM. (4800MB)
2024-05-20 16:18:32 (4200): Setting CPU Count for VM. (8)
2024-05-20 16:18:32 (4200): Setting Chipset Options for VM.
2024-05-20 16:18:32 (4200): Setting Graphics Controller Options for VM.
2024-05-20 16:18:33 (4200): Setting Boot Options for VM.
2024-05-20 16:18:33 (4200): Setting Network Configuration for NAT.
2024-05-20 16:18:33 (4200): Enabling VM Network Access.
2024-05-20 16:18:33 (4200): Disabling USB Support for VM.
2024-05-20 16:18:34 (4200): Disabling COM Port Support for VM.
2024-05-20 16:18:34 (4200): Disabling LPT Port Support for VM.
2024-05-20 16:18:35 (4200): Disabling Audio Support for VM.
2024-05-20 16:18:35 (4200): Disabling Clipboard Support for VM.
2024-05-20 16:18:35 (4200): Disabling Drag and Drop Support for VM.
2024-05-20 16:18:35 (4200): Adding storage controller(s) to VM.
2024-05-20 16:18:36 (4200): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-20 16:18:38 (4200): Adding VirtualBox Guest Additions to VM.
2024-05-20 16:18:39 (4200): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-20 16:18:39 (4200): forwarding host port 56471 to guest port 80
2024-05-20 16:18:39 (4200): Enabling remote desktop for VM.
2024-05-20 16:18:40 (4200): Required extension pack not installed, remote desktop not enabled.
2024-05-20 16:18:40 (4200): Enabling shared directory for VM.
2024-05-20 16:18:40 (4200): Starting VM using VBoxManage interface. (boinc_92f893a2fea35958, slot#0)
2024-05-20 16:18:45 (4200): Successfully started VM. (PID = '4880')
2024-05-20 16:18:45 (4200): Reporting VM Process ID to BOINC.
2024-05-20 16:18:45 (4200): Guest Log: BIOS: VirtualBox 7.0.8
2024-05-20 16:18:45 (4200): Guest Log: CPUID EDX: 0x178bfbff
2024-05-20 16:18:45 (4200): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-20 16:18:45 (4200): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-20 16:18:45 (4200): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-20 16:18:45 (4200): Detected: Web Application Enabled (http://localhost:56471)
2024-05-20 16:18:45 (4200): Preference change detected
2024-05-20 16:18:45 (4200): Setting CPU throttle for VM. (85%)
2024-05-20 16:18:45 (4200): Setting network throttle for VM. (1000KB)
2024-05-20 16:18:46 (4200): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-20 16:18:47 (4200): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-20 16:18:47 (4200): Guest Log: BIOS: Booting from Hard Disk...
2024-05-20 16:18:50 (4200): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-20 16:18:50 (4200): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-20 16:18:50 (4200): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-20 16:18:55 (4200): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-20 16:18:55 (4200): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-20 16:19:03 (4200): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000070 main     Log opened 2024-05-20T16:19:00.796796000Z
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000134 main     OS Product: Linux
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000156 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000173 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000189 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000190 main     Process ID: 1366
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000190 main     Package type: LINUX_64BITS_GENERIC
2024-05-20 16:19:03 (4200): Guest Log: 00:00:00.000605 main     5.2.32 r132073 started. Verbose level = 0
2024-05-20 16:19:03 (4200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-20 16:19:03 (4200): Guest Log: [INFO] Mounting shared directory
2024-05-20 16:19:03 (4200): Guest Log: [INFO] Checking for init_data.xml
2024-05-20 16:19:08 (4200): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-20 16:19:08 (4200): Guest Log: [INFO] Detected branch: prod
2024-05-20 16:19:08 (4200): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-20 16:19:08 (4200): Guest Log: Copying input files
2024-05-20 16:19:12 (4200): Guest Log: Copied input files into RunAtlas.
2024-05-20 16:19:12 (4200): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-20 16:19:12 (4200): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-20 16:19:12 (4200): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-20 16:19:12 (4200): Guest Log: Further information can be found at the LHC@home message board.
2024-05-20 16:19:13 (4200): Guest Log: 00:00:10.002997 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 169 304 000ns (GuestNow=1 716 211 152 629 192 000 ns GuestLast=1 716 221 940 798 496 000 ns fSetTimeLastLoop=true )
2024-05-20 16:19:22 (4200): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-20 16:19:22 (4200): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-20 16:19:22 (4200): Guest Log: 2.6.3.0 1658 0 32028 132951 4 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-20 16:19:23 (4200): Guest Log: copied the webapp to /var/www
2024-05-20 16:19:23 (4200): Guest Log: ATHENA_PROC_NUMBER=8
2024-05-20 16:19:23 (4200): Guest Log: ATHENA_CORE_NUMBER=8
2024-05-20 16:19:24 (4200): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-20 16:19:24 (4200): Guest Log:  *** Starting ATLAS job. (PandaID=6207703037 taskID=38921001) ***
2024-05-20 17:58:47 (4200): Status Report: Elapsed Time: '6000.000000'
2024-05-20 17:58:47 (4200): Status Report: CPU Time: '33752.625000'
2024-05-20 19:22:53 (4200): VM state change detected. (old = 'running', new = 'paused')
2024-05-20 19:23:13 (4200): VM state change detected. (old = 'paused', new = 'running')
2024-05-20 19:39:11 (4200): Status Report: Elapsed Time: '12000.000000'
2024-05-20 19:39:11 (4200): Status Report: CPU Time: '76901.828125'
2024-05-20 20:58:26 (4200): Guest Log:  *** Job finished ***
2024-05-20 20:58:26 (4200): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:00,877 | INFO     | [payload] failed_post thread has finished
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:01,513 | INFO     | [job] queue monitor thread has finished
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:02,602 | INFO     | [data] queue_monitor thread has finished
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:02,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781287262016)>', '<ExcThread(monitor, started 139780624992000)>']
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:03,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:03,651 | INFO     | [monitor] control thread has ended
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,828 | INFO     | all workflow threads have been joined
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,828 | INFO     | end of generic workflow (traces error code: 0)
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,828 | INFO     | traces error code: 0
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,939 [wrapper] ==== pilot stdout END ====
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,942 [wrapper] ==== wrapper stdout RESUME ====
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,944 [wrapper] pilotpid: 6565
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:07,947 [wrapper] Pilot exit status: 0
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:08,092 [wrapper] pandaids: 6207703037
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:08,114 [wrapper] cleanup: SIGTERM to supervisor_pilot 19623 6566
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:08,116 [wrapper] Test setup, not cleaning
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:08,119 [wrapper] ==== wrapper stdout END ====
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:08,121 [wrapper] ==== wrapper stderr END ====
2024-05-20 20:58:26 (4200): Guest Log: 2024-05-20 17:58:08,126 [wrapper] apfmon messages muted
2024-05-20 20:58:26 (4200): Guest Log:  *** Error codes and diagnostics ***
2024-05-20 20:58:26 (4200): Guest Log:     "exeErrorCode": 0,
2024-05-20 20:58:26 (4200): Guest Log:     "exeErrorDiag": "",
2024-05-20 20:58:26 (4200): Guest Log:     "pilotErrorCode": 0,
2024-05-20 20:58:26 (4200): Guest Log:     "pilotErrorDiag": "",
2024-05-20 20:58:26 (4200): Guest Log:  *** Listing of results directory ***
2024-05-20 20:58:26 (4200): Guest Log: total 354812
2024-05-20 20:58:26 (4200): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 17 02:46 pilot3.tar.gz
2024-05-20 20:58:26 (4200): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 17 02:47 queuedata.json
2024-05-20 20:58:26 (4200): Guest Log: -rwx------. 1 atlas atlas     32251 May 17 02:47 runpilot2-wrapper.sh
2024-05-20 20:58:26 (4200): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 20 13:19 start_atlas.sh
2024-05-20 20:58:26 (4200): Guest Log: -rwxr-xr-x. 1 atlas atlas    480010 May 20 13:19 input.tar.gz
2024-05-20 20:58:26 (4200): Guest Log: -rwxr-xr-x. 1 atlas atlas      9264 May 20 13:19 init_data.xml
2024-05-20 20:58:26 (4200): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 20 13:19 EVNT.38776190._000018.pool.root.1 -> /data/./ATLAS.root_0
2024-05-20 20:58:26 (4200): Guest Log: -rw-r--r--. 1 atlas atlas      2649 May 20 13:19 pandaJob.out
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas       424 May 20 13:19 setup.sh.local
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas   1013965 May 20 13:20 agis_schedconf.cvmfs.json
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas   1324701 May 20 13:20 cric_ddmendpoints.json
2024-05-20 20:58:26 (4200): Guest Log: drwx------. 4 atlas atlas      4096 May 20 13:20 pilot3
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas 356118258 May 20 17:57 HITS.38921001._001118.pool.root.1
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas      1028 May 20 17:57 memory_monitor_summary.json
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas         0 May 20 17:57 agis_ddmendpoints.agis.ALL.json
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas    419077 May 20 17:57 log.38921001._001118.job.log.tgz.1
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas      7709 May 20 17:57 heartbeat.json
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas        95 May 20 17:57 pilot_heartbeat.json
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas      4271 May 20 17:58 pilotlog.txt
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas   1451510 May 20 17:58 log.38921001._001118.job.log.1
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas       357 May 20 17:58 output.list
2024-05-20 20:58:26 (4200): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 20 17:58 runtime_log
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas   1894400 May 20 17:58 result.tar.gz
2024-05-20 20:58:26 (4200): Guest Log: -rw-r--r--. 1 atlas atlas     10901 May 20 17:58 runtime_log.err
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas       638 May 20 17:58 GTpLDmco2R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmpPQKDmvm5D9m.diag
2024-05-20 20:58:26 (4200): Guest Log: Looking for outputfile HITS.38921001._001118.pool.root.1
2024-05-20 20:58:26 (4200): Guest Log: HITS file was successfully produced
2024-05-20 20:58:26 (4200): Guest Log: -rw-------. 1 atlas atlas 356118258 May 20 17:57 /home/atlas/RunAtlas/HITS.38921001._001118.pool.root.1
2024-05-20 20:58:27 (4200): Guest Log: Successfully finished the ATLAS job!
2024-05-20 20:58:27 (4200): Guest Log: Copying the results back to the shared directory!
2024-05-20 20:58:27 (4200): Guest Log:  *** Contents of shared directory: ***
2024-05-20 20:58:27 (4200): Guest Log: total 951336
2024-05-20 20:58:27 (4200): Guest Log: -rwxrwxrwx. 1 root root 615634558 May 20 13:18 ATLAS.root_0
2024-05-20 20:58:27 (4200): Guest Log: -rwxrwxrwx. 1 root root 356118258 May 20  2024 HITS.pool.root.1
2024-05-20 20:58:27 (4200): Guest Log: -rwxrwxrwx. 1 root root      9264 May 20 13:18 init_data.xml
2024-05-20 20:58:27 (4200): Guest Log: -rwxrwxrwx. 1 root root    480010 May 17 04:58 input.tar.gz
2024-05-20 20:58:27 (4200): Guest Log: -rwxrwxrwx. 1 root root   1894400 May 20  2024 result.tar.gz
2024-05-20 20:58:27 (4200): Guest Log: -rwxrwxrwx. 1 root root     17537 May 17 04:58 start_atlas.sh
2024-05-20 20:58:27 (4200): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-20 20:58:27 (4200): VM Completion File Detected.
2024-05-20 20:58:27 (4200): Powering off VM.
2024-05-20 20:58:27 (4200): Successfully stopped VM.
2024-05-20 20:58:27 (4200): Deregistering VM. (boinc_92f893a2fea35958, slot#0)
2024-05-20 20:58:27 (4200): Removing network bandwidth throttle group from VM.
2024-05-20 20:58:28 (4200): Removing VM from VirtualBox.
20:58:33 (4200): called boinc_finish(0)

</stderr_txt>
]]>

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