Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
07:08:33 (91998): wrapper (7.7.26015): starting
07:08:33 (91998): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 07:08:33] Arguments: --nthreads 12
[2024-05-17 07:08:33] Threads: 12
[2024-05-17 07:08:33] Checking for CVMFS
[2024-05-17 07:08:33] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 07:08:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 07:08:33] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 07:08:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 07:08:33] 2.10.1.0 2798 172320 175036 132842 1 283 44332734 45568000 15350 130560 0 1091260358 99.771 636738871 17681 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-17 07:08:33] CVMFS is ok
[2024-05-17 07:08:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 07:08:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 07:08:33] Further information can be found at the LHC@home message board.
[2024-05-17 07:08:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 07:08:33] Checking for apptainer binary...
[2024-05-17 07:08:33] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 07:08:33] Running /usr/bin/apptainer --version
[2024-05-17 07:08:33] apptainer version 1.1.8-1.el7
[2024-05-17 07:08:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 07:08:34] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0093.triumf.lcg
[2024-05-17 07:08:34] apptainer works
[2024-05-17 07:08:34] Set ATHENA_PROC_NUMBER=12
[2024-05-17 07:08:34] Set ATHENA_CORE_NUMBER=12
[2024-05-17 07:08:34] Starting ATLAS job with PandaID=6207691309
[2024-05-17 07:08:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 08:41:36]  *** The last 200 lines of the pilot log: ***
[2024-05-17 08:41:36]  domain=
[2024-05-17 08:41:36]  filesize=384347
[2024-05-17 08:41:36]  filetype=log
[2024-05-17 08:41:36]  guid=e5a80c07-065d-4094-8847-168af5f57781
[2024-05-17 08:41:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-17 08:41:36]  is_tar=False
[2024-05-17 08:41:36]  lfn=log.38920982._002998.job.log.tgz.1
[2024-05-17 08:41:36]  mtime=0
[2024-05-17 08:41:36]  protocol_id=None
[2024-05-17 08:41:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 08:41:36]  replicas=None
[2024-05-17 08:41:36]  scope=mc23_13p6TeV
[2024-05-17 08:41:36]  status=None
[2024-05-17 08:41:36]  status_code=0
[2024-05-17 08:41:36]  storage_token=
[2024-05-17 08:41:36]  surl=/home/boinc/slots/0/PanDA_Pilot-6207691309/log.38920982._002998.job.log.tgz.1
[2024-05-17 08:41:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/e0/log.38920982._002998.job.log.tgz.1
[2024-05-17 08:41:36]  workdir=None
[2024-05-17 08:41:36] ]
[2024-05-17 08:41:36] 2024-05-17 15:41:09,490 | INFO     | transferring file log.38920982._002998.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6207691309/log.38920982._002998.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 08:41:36] 2024-05-17 15:41:09,490 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6207691309/log.38920982._002998.job.log.tgz.1 /home/boinc/slots/0/log.38920982._002998.job.log.t
[2024-05-17 08:41:36] 2024-05-17 15:41:09,513 | INFO     | adding to output.list: log.38920982._002998.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/e0/log.38920982._002998.job.log.tg
[2024-05-17 08:41:36] 2024-05-17 15:41:09,514 | INFO     | summary of transferred files:
[2024-05-17 08:41:36] 2024-05-17 15:41:09,514 | INFO     |  -- lfn=log.38920982._002998.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 08:41:36] 2024-05-17 15:41:09,514 | INFO     | stage-out finished correctly
[2024-05-17 08:41:36] 2024-05-17 15:41:11,360 | INFO     | monitor loop #426: job 0:6207691309 is in state 'finished'
[2024-05-17 08:41:36] 2024-05-17 15:41:11,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 08:41:36] 2024-05-17 15:41:11,638 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 08:41:36] 2024-05-17 15:41:11,723 | INFO     | job 6207691309 has state=finished
[2024-05-17 08:41:36] 2024-05-17 15:41:11,723 | INFO     | preparing for final server update for job 6207691309 in state='finished'
[2024-05-17 08:41:36] 2024-05-17 15:41:11,723 | INFO     | this job has now completed (state=finished)
[2024-05-17 08:41:36] 2024-05-17 15:41:11,724 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 08:41:36] 2024-05-17 15:41:11,724 | INFO     | job 6207691309 has finished - writing final server update
[2024-05-17 08:41:36] 2024-05-17 15:41:11,724 | INFO     | total number of processed events: 400 (read)
[2024-05-17 08:41:36] 2024-05-17 15:41:11,729 | INFO     | executing command: lscpu
[2024-05-17 08:41:36] 2024-05-17 15:41:11,793 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 08:41:36] 2024-05-17 15:41:11,794 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 08:41:36] 2024-05-17 15:41:11,830 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 08:41:36] 2024-05-17 15:41:13,863 | INFO     | monitor loop #427: job 0:6207691309 is in state 'finished'
[2024-05-17 08:41:36] 2024-05-17 15:41:13,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 08:41:36] 2024-05-17 15:41:16,015 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 08:41:36] 2024-05-17 15:41:16,015 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6207691309/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 08:41:36] 2024-05-17 15:41:16,016 | INFO     | extracted standard info from prmon json
[2024-05-17 08:41:36] 2024-05-17 15:41:16,016 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 08:41:36] 2024-05-17 15:41:16,016 | WARNING  | GPU info not found in prmon json
[2024-05-17 08:41:36] 2024-05-17 15:41:16,016 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 08:41:36] 2024-05-17 15:41:16,016 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 08:41:36] 2024-05-17 15:41:16,017 | INFO     | fitting pss+swap vs Time
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | model: linear, x: [1715955256.0, 1715955317.0, 1715955378.0, 1715955439.0, 1715955500.0, 1715955561.0, 1715955622.0, 1715955683.0, 1715955744.0, 1715955805.0, 1715
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | sum of square deviations: 183761585.0
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | sum of deviations: 33057786333.5
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | mean x: 1715957787.5
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | mean y: 2643907.75
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | -- intersect: -308689544922.034
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | intersect: -308689544922.034
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | chi2: 3.069643599816231
[2024-05-17 08:41:36] 2024-05-17 15:41:16,018 | INFO     | -- intersect: -308689544922.034
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | current memory leak: 179.89 B/s (using 84 data points, chi2=3.07)
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | ..............................
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . Timing measurements:
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . get job = 0 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . initial setup = 2 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . payload setup = 5 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . stage-in = 0 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . payload execution = 5519 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . stage-out = 0 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | . log creation = 0 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,019 | INFO     | ..............................
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | 
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | job summary report
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | --------------------------------------------------
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | PanDA job id: 6207691309
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | task id: 38920982
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | errors: (none)
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | pilot state: finished 
[2024-05-17 08:41:36] 2024-05-17 15:41:16,073 | INFO     | transexitcode: 0
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | exeerrorcode: 0
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | exeerrordiag: 
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | exitcode: 0
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | exitmsg: OK
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | cpuconsumptiontime: 53597 s
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | nevents: 400
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | neventsw: 0
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | pid: 106921
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | pgrp: 106921
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | corecount: 12
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | event service: False
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | sizes: {0: 2392011, 1: 2392210, 5: 2392416, 11: 2392472, 5528: 2419029, 5530: 2427983, 5532: 2428167, 5537: 2428337}
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | --------------------------------------------------
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | 
[2024-05-17 08:41:36] 2024-05-17 15:41:16,074 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 08:41:36] 2024-05-17 15:41:16,096 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,096 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,096 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,098 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 08:41:36] 2024-05-17 15:41:16,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,098 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 08:41:36] 2024-05-17 15:41:16,098 | INFO     | job 6207691309 has completed (purged errors)
[2024-05-17 08:41:36] 2024-05-17 15:41:16,098 | INFO     | overall cleanup function is called
[2024-05-17 08:41:36] 2024-05-17 15:41:17,103 | INFO     | --- collectZombieJob: --- 10, [106921]
[2024-05-17 08:41:36] 2024-05-17 15:41:17,104 | INFO     | zombie collector waiting for pid 106921
[2024-05-17 08:41:36] 2024-05-17 15:41:17,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 08:41:36] 2024-05-17 15:41:18,109 | INFO     | collected zombie processes
[2024-05-17 08:41:36] 2024-05-17 15:41:18,110 | INFO     | will now attempt to kill all subprocesses of pid=106921
[2024-05-17 08:41:36] 2024-05-17 15:41:18,343 | INFO     | process IDs to be killed: [106921] (in reverse order)
[2024-05-17 08:41:36] 2024-05-17 15:41:18,491 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 08:41:36] 2024-05-17 15:41:18,492 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 08:41:36] 2024-05-17 15:41:18,502 | INFO     | did not find any defunct processes belonging to 106921
[2024-05-17 08:41:36] 2024-05-17 15:41:18,510 | INFO     | did not find any defunct processes belonging to 106921
[2024-05-17 08:41:36] 2024-05-17 15:41:18,510 | INFO     | ready for new job
[2024-05-17 08:41:36] 2024-05-17 15:41:18,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 08:41:36] 2024-05-17 15:41:18,512 | INFO     | *************************************
[2024-05-17 08:41:36] 2024-05-17 15:41:18,512 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 08:41:36] 2024-05-17 15:41:18,512 | INFO     | *************************************
[2024-05-17 08:41:36] 2024-05-17 15:41:18,512 | INFO     | 
[2024-05-17 08:41:36] 2024-05-17 15:41:18,516 | INFO     | architecture information:
[2024-05-17 08:41:36] 2024-05-17 15:41:18,516 | INFO     | executing command: cat /etc/os-release
[2024-05-17 08:41:36] 2024-05-17 15:41:18,531 | INFO     | cat /etc/os-release:
[2024-05-17 08:41:36] NAME="CentOS Linux"
[2024-05-17 08:41:36] VERSION="7 (Core)"
[2024-05-17 08:41:36] ID="centos"
[2024-05-17 08:41:36] ID_LIKE="rhel fedora"
[2024-05-17 08:41:36] VERSION_ID="7"
[2024-05-17 08:41:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 08:41:36] ANSI_COLOR="0;31"
[2024-05-17 08:41:36] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 08:41:36] HOME_URL="https://www.centos.org/"
[2024-05-17 08:41:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 08:41:36] 
[2024-05-17 08:41:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 08:41:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 08:41:36] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 08:41:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 08:41:36] 
[2024-05-17 08:41:36] 2024-05-17 15:41:18,531 | INFO     | *************************************
[2024-05-17 08:41:36] 2024-05-17 15:41:19,034 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 08:41:36] 2024-05-17 15:41:19,052 | INFO     | sufficient remaining disk space (2124547096576 B)
[2024-05-17 08:41:36] 2024-05-17 15:41:19,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 08:41:36] 2024-05-17 15:41:19,053 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 08:41:36] 2024-05-17 15:41:19,053 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 08:41:36] 2024-05-17 15:41:19,053 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 08:41:36] 2024-05-17 15:41:19,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 08:41:36] 2024-05-17 15:41:19,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 08:41:36] 2024-05-17 15:41:19,262 | INFO     | all payload control threads have been joined
[2024-05-17 08:41:36] 2024-05-17 15:41:19,268 | INFO     | all data control threads have been joined
[2024-05-17 08:41:36] 2024-05-17 15:41:19,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 08:41:36] 2024-05-17 15:41:19,878 | INFO     | aborting loop
[2024-05-17 08:41:36] 2024-05-17 15:41:19,956 | INFO     | all job control threads have been joined
[2024-05-17 08:41:36] 2024-05-17 15:41:20,057 | INFO     | [job] retrieve thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 08:41:36] 2024-05-17 15:41:20,119 | INFO     | [job] validate thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,144 | INFO     | [payload] validate_post thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,190 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,268 | INFO     | [payload] control thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,274 | INFO     | [data] control thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,879 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,883 | INFO     | [job] job monitor thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,957 | INFO     | [job] control thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:20,969 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:21,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 08:41:36] 2024-05-17 15:41:21,138 | INFO     | [payload] failed_post thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:21,423 | INFO     | [data] copytool_in thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:22,090 | INFO     | [job] queue monitor thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:22,117 | INFO     | [data] copytool_out thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:22,232 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 08:41:36] 2024-05-17 15:41:26,238 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:29,111 | INFO     | job.realtimelogging is not enabled
[2024-05-17 08:41:36] 2024-05-17 15:41:30,117 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 08:41:36] 2024-05-17 15:41:30,247 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667104429888)>', '<ExcThread(monitor, started 140666503927552)>']
[2024-05-17 08:41:36] 2024-05-17 15:41:31,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 08:41:36] 2024-05-17 15:41:31,128 | INFO     | [monitor] control thread has ended
[2024-05-17 08:41:36] 2024-05-17 15:41:35,272 | INFO     | all workflow threads have been joined
[2024-05-17 08:41:36] 2024-05-17 15:41:35,273 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 08:41:36] 2024-05-17 15:41:35,273 | INFO     | traces error code: 0
[2024-05-17 08:41:36] 2024-05-17 15:41:35,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 08:41:36] 2024-05-17 15:41:35,388 [wrapper] ==== pilot stdout END ====
[2024-05-17 08:41:36] 2024-05-17 15:41:35,392 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 08:41:36] 2024-05-17 15:41:35,395 [wrapper] pilotpid: 96210
[2024-05-17 08:41:36] 2024-05-17 15:41:35,397 [wrapper] Pilot exit status: 0
[2024-05-17 08:41:36] 2024-05-17 15:41:35,408 [wrapper] pandaids: 6207691309
[2024-05-17 08:41:36] 2024-05-17 15:41:35,515 [wrapper] cleanup: SIGTERM to supervisor_pilot 212316 96211
[2024-05-17 08:41:36] 2024-05-17 15:41:35,517 [wrapper] Test setup, not cleaning
[2024-05-17 08:41:36] 2024-05-17 15:41:35,519 [wrapper] ==== wrapper stdout END ====
[2024-05-17 08:41:36] 2024-05-17 15:41:35,521 [wrapper] ==== wrapper stderr END ====
[2024-05-17 08:41:36] 2024-05-17 15:41:35,526 [wrapper] apfmon messages muted
[2024-05-17 08:41:36]  *** Error codes and diagnostics ***
[2024-05-17 08:41:36]     "exeErrorCode": 0,
[2024-05-17 08:41:36]     "exeErrorDiag": "",
[2024-05-17 08:41:36]     "pilotErrorCode": 0,
[2024-05-17 08:41:36]     "pilotErrorDiag": "",
[2024-05-17 08:41:36]  *** Listing of results directory ***
[2024-05-17 08:41:36] total 928028
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc    467845 May 16 18:57 pilot3.tar.gz
[2024-05-17 08:41:36] -rwx------ 1 boinc boinc     32251 May 16 19:14 runpilot2-wrapper.sh
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc      5633 May 16 19:14 queuedata.json
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc       100 May 17 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 08:41:36] -rwxr-xr-x 1 boinc boinc      7986 May 17 07:08 run_atlas
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc       105 May 17 07:08 job.xml
[2024-05-17 08:41:36] -rw-r--r-- 2 boinc boinc 635017585 May 17 07:08 EVNT.38776160._000052.pool.root.1
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc      6627 May 17 07:08 init_data.xml
[2024-05-17 08:41:36] drwxrwx--x 2 boinc boinc      4096 May 17 07:08 shared
[2024-05-17 08:41:36] -rw-r--r-- 2 boinc boinc    480005 May 17 07:08 input.tar.gz
[2024-05-17 08:41:36] -rw-r--r-- 2 boinc boinc     17537 May 17 07:08 start_atlas.sh
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc         0 May 17 07:08 boinc_lockfile
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc      2625 May 17 07:08 pandaJob.out
[2024-05-17 08:41:36] -rw------- 1 boinc boinc       424 May 17 07:08 setup.sh.local
[2024-05-17 08:41:36] -rw------- 1 boinc boinc   1019386 May 17 07:08 agis_schedconf.cvmfs.json
[2024-05-17 08:41:36] -rw------- 1 boinc boinc         0 May 17 07:08 agis_ddmendpoints.agis.ALL.json
[2024-05-17 08:41:36] -rw------- 1 boinc boinc   1324701 May 17 07:08 cric_ddmendpoints.json
[2024-05-17 08:41:36] drwx------ 4 boinc boinc      4096 May 17 07:08 pilot3
[2024-05-17 08:41:36] -rw------- 1 boinc boinc 309909702 May 17 08:40 HITS.38920982._002998.pool.root.1
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc       531 May 17 08:40 boinc_task_state.xml
[2024-05-17 08:41:36] -rw------- 1 boinc boinc        95 May 17 08:41 pilot_heartbeat.json
[2024-05-17 08:41:36] -rw------- 1 boinc boinc      1057 May 17 08:41 memory_monitor_summary.json
[2024-05-17 08:41:36] -rw------- 1 boinc boinc    384347 May 17 08:41 log.38920982._002998.job.log.tgz.1
[2024-05-17 08:41:36] -rw------- 1 boinc boinc      7769 May 17 08:41 heartbeat.json
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc      8192 May 17 08:41 boinc_mmap_file
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc        27 May 17 08:41 wrapper_checkpoint.txt
[2024-05-17 08:41:36] -rw------- 1 boinc boinc      4405 May 17 08:41 pilotlog.txt
[2024-05-17 08:41:36] -rw------- 1 boinc boinc    534725 May 17 08:41 log.38920982._002998.job.log.1
[2024-05-17 08:41:36] -rw------- 1 boinc boinc       357 May 17 08:41 output.list
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc       620 May 17 08:41 runtime_log
[2024-05-17 08:41:36] -rw------- 1 boinc boinc    942080 May 17 08:41 result.tar.gz
[2024-05-17 08:41:36] -rw------- 1 boinc boinc       653 May 17 08:41 x1kKDmDI2R5nsSi4apGgGQJmABFKDmABFKDm4ySLDmxNQKDmwUuwam.diag
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc     11286 May 17 08:41 runtime_log.err
[2024-05-17 08:41:36] -rw-r--r-- 1 boinc boinc     21524 May 17 08:41 stderr.txt
[2024-05-17 08:41:36] HITS file was successfully produced:
[2024-05-17 08:41:36] -rw------- 1 boinc boinc 309909702 May 17 08:40 shared/HITS.pool.root.1
[2024-05-17 08:41:36]  *** Contents of shared directory: ***
[2024-05-17 08:41:36] total 924204
[2024-05-17 08:41:36] -rw-r--r-- 2 boinc boinc 635017585 May 17 07:08 ATLAS.root_0
[2024-05-17 08:41:36] -rw-r--r-- 2 boinc boinc    480005 May 17 07:08 input.tar.gz
[2024-05-17 08:41:36] -rw-r--r-- 2 boinc boinc     17537 May 17 07:08 start_atlas.sh
[2024-05-17 08:41:36] -rw------- 1 boinc boinc 309909702 May 17 08:40 HITS.pool.root.1
[2024-05-17 08:41:36] -rw------- 1 boinc boinc    942080 May 17 08:41 result.tar.gz
08:41:37 (91998): run_atlas exited; CPU time 53411.707767
08:41:37 (91998): called boinc_finish(0)

</stderr_txt>
]]>

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