Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:58:32 (137002): wrapper (7.7.26015): starting
21:58:32 (137002): wrapper: running run_atlas (--nthreads 4)
[2024-05-18 21:58:32] Arguments: --nthreads 4
[2024-05-18 21:58:32] Threads: 4
[2024-05-18 21:58:32] Checking for CVMFS
[2024-05-18 21:58:32] No cvmfs_config command found, will try listing directly
[2024-05-18 21:58:32] CVMFS is ok
[2024-05-18 21:58:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 21:58:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 21:58:32] Further information can be found at the LHC@home message board.
[2024-05-18 21:58:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 21:58:32] Checking for apptainer binary...
[2024-05-18 21:58:32] which: no apptainer in ((null))
[2024-05-18 21:58:32] apptainer is not installed, using version from CVMFS
[2024-05-18 21:58:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 21:58:33] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-05-18 21:58:33] apptainer works
[2024-05-18 21:58:33] Set ATHENA_PROC_NUMBER=4
[2024-05-18 21:58:33] Set ATHENA_CORE_NUMBER=4
[2024-05-18 21:58:33] Starting ATLAS job with PandaID=6207676663
[2024-05-18 21:58:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 02:01:19]  *** The last 200 lines of the pilot log: ***
[2024-05-19 02:01:19] 2024-05-19 00:00:56,901 | INFO     | current chi2=1.679807990527192 (change=60.948498561418795 %)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,901 | INFO     | model: linear, x: [1716062956.0, 1716063017.0, 1716063078.0, 1716063139.0, 1716063200.0, 1716063261.0, 1716063322.0, 1716063383.0, 1716063444.0, 1716063505.0, 1716
[2024-05-19 02:01:19] 2024-05-19 00:00:56,902 | INFO     | sum of square deviations: 3675146117.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,903 | INFO     | sum of deviations: 21027630585.500004
[2024-05-19 02:01:19] 2024-05-19 00:00:56,903 | INFO     | mean x: 1716069879.5
[2024-05-19 02:01:19] 2024-05-19 00:00:56,904 | INFO     | mean y: 2359218.197368421
[2024-05-19 02:01:19] 2024-05-19 00:00:56,904 | INFO     | -- intersect: -9816266310.2171
[2024-05-19 02:01:19] 2024-05-19 00:00:56,904 | INFO     | intersect: -9816266310.2171
[2024-05-19 02:01:19] 2024-05-19 00:00:56,904 | INFO     | chi2: 0.054858180879385134
[2024-05-19 02:01:19] 2024-05-19 00:00:56,904 | INFO     | current chi2=0.054858180879385134 (change=96.73425884453803 %)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,905 | INFO     | model: linear, x: [1716063261.0, 1716063322.0, 1716063383.0, 1716063444.0, 1716063505.0, 1716063566.0, 1716063627.0, 1716063688.0, 1716063749.0, 1716063810.0, 1716
[2024-05-19 02:01:19] 2024-05-19 00:00:56,905 | INFO     | sum of square deviations: 3438620752.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,906 | INFO     | sum of deviations: 13460950275.999998
[2024-05-19 02:01:19] 2024-05-19 00:00:56,906 | INFO     | mean x: 1716070032.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,906 | INFO     | mean y: 2364058.7264573993
[2024-05-19 02:01:19] 2024-05-19 00:00:56,906 | INFO     | -- intersect: -6715426310.406324
[2024-05-19 02:01:19] 2024-05-19 00:00:56,907 | INFO     | intersect: -6715426310.406324
[2024-05-19 02:01:19] 2024-05-19 00:00:56,907 | INFO     | chi2: 0.001691389389942714
[2024-05-19 02:01:19] 2024-05-19 00:00:56,907 | INFO     | current chi2=0.001691389389942714 (change=96.91679643249287 %)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,907 | INFO     | model: linear, x: [1716063566.0, 1716063627.0, 1716063688.0, 1716063749.0, 1716063810.0, 1716063871.0, 1716063932.0, 1716063993.0, 1716064054.0, 1716064115.0, 1716
[2024-05-19 02:01:19] 2024-05-19 00:00:56,908 | INFO     | sum of square deviations: 3212467674.5
[2024-05-19 02:01:19] 2024-05-19 00:00:56,909 | INFO     | sum of deviations: 11644933062.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,909 | INFO     | mean x: 1716070184.5
[2024-05-19 02:01:19] 2024-05-19 00:00:56,909 | INFO     | mean y: 2365280.7247706424
[2024-05-19 02:01:19] 2024-05-19 00:00:56,909 | INFO     | -- intersect: -6218249042.283724
[2024-05-19 02:01:19] 2024-05-19 00:00:56,910 | INFO     | intersect: -6218249042.283724
[2024-05-19 02:01:19] 2024-05-19 00:00:56,910 | INFO     | chi2: 0.0008685076490225406
[2024-05-19 02:01:19] 2024-05-19 00:00:56,910 | INFO     | current chi2=0.0008685076490225406 (change=48.65122991861996 %)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,910 | INFO     | model: linear, x: [1716063871.0, 1716063932.0, 1716063993.0, 1716064054.0, 1716064115.0, 1716064176.0, 1716064237.0, 1716064298.0, 1716064359.0, 1716064420.0, 1716
[2024-05-19 02:01:19] 2024-05-19 00:00:56,911 | INFO     | sum of square deviations: 2996454322.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,912 | INFO     | sum of deviations: 10274804193.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,912 | INFO     | mean x: 1716070337.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,912 | INFO     | mean y: 2366245.600938967
[2024-05-19 02:01:19] 2024-05-19 00:00:56,912 | INFO     | -- intersect: -5882017362.263224
[2024-05-19 02:01:19] 2024-05-19 00:00:56,912 | INFO     | intersect: -5882017362.263224
[2024-05-19 02:01:19] 2024-05-19 00:00:56,913 | INFO     | chi2: 0.0004904662651294524
[2024-05-19 02:01:19] 2024-05-19 00:00:56,913 | INFO     | current chi2=0.0004904662651294524 (change=43.527697691385185 %)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,913 | INFO     | model: linear, x: [1716064176.0, 1716064237.0, 1716064298.0, 1716064359.0, 1716064420.0, 1716064481.0, 1716064542.0, 1716064603.0, 1716064664.0, 1716064725.0, 1716
[2024-05-19 02:01:19] 2024-05-19 00:00:56,913 | INFO     | sum of square deviations: 2790348132.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,915 | INFO     | sum of deviations: 9313081700.5
[2024-05-19 02:01:19] 2024-05-19 00:00:56,915 | INFO     | mean x: 1716070489.5
[2024-05-19 02:01:19] 2024-05-19 00:00:56,915 | INFO     | mean y: 2366956.716346154
[2024-05-19 02:01:19] 2024-05-19 00:00:56,915 | INFO     | -- intersect: -5725199610.784102
[2024-05-19 02:01:19] 2024-05-19 00:00:56,915 | INFO     | intersect: -5725199610.784102
[2024-05-19 02:01:19] 2024-05-19 00:00:56,915 | INFO     | chi2: 0.00042690771417890967
[2024-05-19 02:01:19] 2024-05-19 00:00:56,916 | INFO     | current chi2=0.00042690771417890967 (change=12.958801750364476 %)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,916 | INFO     | left removable region: 60
[2024-05-19 02:01:19] 2024-05-19 00:00:56,916 | INFO     | model: linear, x: [1716066006.0, 1716066067.0, 1716066128.0, 1716066189.0, 1716066250.0, 1716066311.0, 1716066372.0, 1716066433.0, 1716066494.0, 1716066555.0, 1716
[2024-05-19 02:01:19] 2024-05-19 00:00:56,916 | INFO     | sum of square deviations: 1577789583.0
[2024-05-19 02:01:19] 2024-05-19 00:00:56,917 | INFO     | sum of deviations: 4366462746.500001
[2024-05-19 02:01:19] 2024-05-19 00:00:56,917 | INFO     | mean x: 1716071221.5
[2024-05-19 02:01:19] 2024-05-19 00:00:56,917 | INFO     | mean y: 2370212.4941860465
[2024-05-19 02:01:19] 2024-05-19 00:00:56,918 | INFO     | -- intersect: -4746780840.19121
[2024-05-19 02:01:19] 2024-05-19 00:00:56,918 | INFO     | intersect: -4746780840.19121
[2024-05-19 02:01:19] 2024-05-19 00:00:56,918 | INFO     | chi2: 0.00017779580419979434
[2024-05-19 02:01:19] 2024-05-19 00:00:56,918 | INFO     | -- intersect: -4746780840.19121
[2024-05-19 02:01:19] 2024-05-19 00:00:56,918 | INFO     | current memory leak: 2.77 B/s (using 172 data points, chi2=0.00)
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | ..............................
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . Timing measurements:
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . get job = 0 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . initial setup = 1 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . payload setup = 5 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . stage-in = 0 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . payload execution = 14505 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . stage-out = 0 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | . log creation = 0 s
[2024-05-19 02:01:19] 2024-05-19 00:00:56,919 | INFO     | ..............................
[2024-05-19 02:01:19] 2024-05-19 00:00:57,019 | INFO     | 
[2024-05-19 02:01:19] 2024-05-19 00:00:57,019 | INFO     | job summary report
[2024-05-19 02:01:19] 2024-05-19 00:00:57,019 | INFO     | --------------------------------------------------
[2024-05-19 02:01:19] 2024-05-19 00:00:57,019 | INFO     | PanDA job id: 6207676663
[2024-05-19 02:01:19] 2024-05-19 00:00:57,019 | INFO     | task id: 38920987
[2024-05-19 02:01:19] 2024-05-19 00:00:57,019 | INFO     | errors: (none)
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | pilot state: finished 
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | transexitcode: 0
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | exeerrorcode: 0
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | exeerrordiag: 
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | exitcode: 0
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | exitmsg: OK
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | cpuconsumptiontime: 55348 s
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | nevents: 400
[2024-05-19 02:01:19] 2024-05-19 00:00:57,020 | INFO     | neventsw: 0
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | pid: 149528
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | pgrp: 149528
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | corecount: 4
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | event service: False
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | sizes: {0: 2392089, 4: 2392295, 11: 2392323, 14513: 2423113, 14514: 2423112, 14515: 2432152, 14516: 2432336, 14520: 2432506}
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | --------------------------------------------------
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | 
[2024-05-19 02:01:19] 2024-05-19 00:00:57,021 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/1
[2024-05-19 02:01:19] 2024-05-19 00:00:57,059 | WARNING  | process 149528 is no longer using CPU - aborting
[2024-05-19 02:01:19] 2024-05-19 00:00:57,060 | INFO     | aborting job monitoring since job object (job id=6207676663) has expired
[2024-05-19 02:01:19] 2024-05-19 00:00:57,077 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,077 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,077 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,077 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,077 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | job 6207676663 has completed (purged errors)
[2024-05-19 02:01:19] 2024-05-19 00:00:57,078 | INFO     | overall cleanup function is called
[2024-05-19 02:01:19] 2024-05-19 00:00:58,086 | INFO     | --- collectZombieJob: --- 10, [149528]
[2024-05-19 02:01:19] 2024-05-19 00:00:58,086 | INFO     | zombie collector waiting for pid 149528
[2024-05-19 02:01:19] 2024-05-19 00:00:58,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 02:01:19] 2024-05-19 00:00:59,091 | INFO     | collected zombie processes
[2024-05-19 02:01:19] 2024-05-19 00:00:59,092 | INFO     | will now attempt to kill all subprocesses of pid=149528
[2024-05-19 02:01:19] 2024-05-19 00:00:59,314 | INFO     | process IDs to be killed: [149528] (in reverse order)
[2024-05-19 02:01:19] 2024-05-19 00:00:59,425 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 02:01:19] 2024-05-19 00:00:59,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 02:01:19] 2024-05-19 00:00:59,437 | INFO     | did not find any defunct processes belonging to 149528
[2024-05-19 02:01:19] 2024-05-19 00:00:59,446 | INFO     | did not find any defunct processes belonging to 149528
[2024-05-19 02:01:19] 2024-05-19 00:00:59,446 | INFO     | ready for new job
[2024-05-19 02:01:19] 2024-05-19 00:00:59,446 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 02:01:19] 2024-05-19 00:00:59,448 | INFO     | *************************************
[2024-05-19 02:01:19] 2024-05-19 00:00:59,448 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 02:01:19] 2024-05-19 00:00:59,448 | INFO     | *************************************
[2024-05-19 02:01:19] 2024-05-19 00:00:59,448 | INFO     | 
[2024-05-19 02:01:19] 2024-05-19 00:00:59,452 | INFO     | architecture information:
[2024-05-19 02:01:19] 2024-05-19 00:00:59,453 | INFO     | executing command: cat /etc/os-release
[2024-05-19 02:01:19] 2024-05-19 00:00:59,465 | INFO     | cat /etc/os-release:
[2024-05-19 02:01:19] NAME="CentOS Linux"
[2024-05-19 02:01:19] VERSION="7 (Core)"
[2024-05-19 02:01:19] ID="centos"
[2024-05-19 02:01:19] ID_LIKE="rhel fedora"
[2024-05-19 02:01:19] VERSION_ID="7"
[2024-05-19 02:01:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 02:01:19] ANSI_COLOR="0;31"
[2024-05-19 02:01:19] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 02:01:19] HOME_URL="https://www.centos.org/"
[2024-05-19 02:01:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 02:01:19] 
[2024-05-19 02:01:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 02:01:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 02:01:19] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 02:01:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 02:01:19] 
[2024-05-19 02:01:19] 2024-05-19 00:00:59,466 | INFO     | *************************************
[2024-05-19 02:01:19] 2024-05-19 00:00:59,969 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/1
[2024-05-19 02:01:19] 2024-05-19 00:00:59,985 | INFO     | sufficient remaining disk space (2961751146496 B)
[2024-05-19 02:01:19] 2024-05-19 00:00:59,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 02:01:19] 2024-05-19 00:00:59,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 02:01:19] 2024-05-19 00:00:59,986 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 02:01:19] 2024-05-19 00:01:00,081 | INFO     | all job control threads have been joined
[2024-05-19 02:01:19] 2024-05-19 00:01:00,527 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 02:01:19] 2024-05-19 00:01:00,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 02:01:19] 2024-05-19 00:01:00,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 02:01:19] 2024-05-19 00:01:00,568 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 02:01:19] 2024-05-19 00:01:00,568 | INFO     | aborting loop
[2024-05-19 02:01:19] 2024-05-19 00:01:00,990 | INFO     | [job] retrieve thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,018 | INFO     | all data control threads have been joined
[2024-05-19 02:01:19] 2024-05-19 00:01:01,019 | INFO     | [payload] failed_post thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,024 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,027 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,087 | INFO     | [job] control thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,134 | INFO     | all payload control threads have been joined
[2024-05-19 02:01:19] 2024-05-19 00:01:01,416 | INFO     | [payload] validate_post thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,574 | INFO     | [job] job monitor thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,733 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:01,991 | INFO     | [data] copytool_out thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:02,028 | INFO     | [data] control thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:02,030 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 02:01:19] 2024-05-19 00:01:02,139 | INFO     | [payload] control thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:02,267 | INFO     | [job] validate thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:02,282 | INFO     | [data] copytool_in thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:03,032 | INFO     | [job] queue monitor thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:03,442 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 02:01:19] 2024-05-19 00:01:07,448 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:10,626 | INFO     | job.realtimelogging is not enabled
[2024-05-19 02:01:19] 2024-05-19 00:01:11,632 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 02:01:19] 2024-05-19 00:01:13,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47675151553600)>', '<ExcThread(monitor, started 47675333310208)>']
[2024-05-19 02:01:19] 2024-05-19 00:01:13,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 02:01:19] 2024-05-19 00:01:13,592 | INFO     | [monitor] control thread has ended
[2024-05-19 02:01:19] 2024-05-19 00:01:18,361 | INFO     | all workflow threads have been joined
[2024-05-19 02:01:19] 2024-05-19 00:01:18,361 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 02:01:19] 2024-05-19 00:01:18,362 | INFO     | traces error code: 0
[2024-05-19 02:01:19] 2024-05-19 00:01:18,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 02:01:19] 2024-05-19 00:01:18,461 [wrapper] ==== pilot stdout END ====
[2024-05-19 02:01:19] 2024-05-19 00:01:18,463 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 02:01:19] 2024-05-19 00:01:18,465 [wrapper] pilotpid: 141690
[2024-05-19 02:01:19] 2024-05-19 00:01:18,467 [wrapper] Pilot exit status: 0
[2024-05-19 02:01:19] 2024-05-19 00:01:18,475 [wrapper] pandaids: 6207676663
[2024-05-19 02:01:19] 2024-05-19 00:01:18,561 [wrapper] cleanup: SIGTERM to supervisor_pilot 1049858 141691
[2024-05-19 02:01:19] 2024-05-19 00:01:18,563 [wrapper] Test setup, not cleaning
[2024-05-19 02:01:19] 2024-05-19 00:01:18,564 [wrapper] ==== wrapper stdout END ====
[2024-05-19 02:01:19] 2024-05-19 00:01:18,566 [wrapper] ==== wrapper stderr END ====
[2024-05-19 02:01:19] 2024-05-19 00:01:18,570 [wrapper] apfmon messages muted
[2024-05-19 02:01:19]  *** Error codes and diagnostics ***
[2024-05-19 02:01:19]     "exeErrorCode": 0,
[2024-05-19 02:01:19]     "exeErrorDiag": "",
[2024-05-19 02:01:19]     "pilotErrorCode": 0,
[2024-05-19 02:01:19]     "pilotErrorDiag": "",
[2024-05-19 02:01:19]  *** Listing of results directory ***
[2024-05-19 02:01:19] total 959808
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc    467845 May 17 02:36 pilot3.tar.gz
[2024-05-19 02:01:19] -rwx------ 1 boinc boinc     32251 May 17 03:03 runpilot2-wrapper.sh
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc      5633 May 17 03:03 queuedata.json
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc       100 May 18 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 02:01:19] -rwxr-xr-x 1 boinc boinc      7986 May 18 21:58 run_atlas
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc       105 May 18 21:58 job.xml
[2024-05-19 02:01:19] -rw-r--r-- 2 boinc boinc 636409299 May 18 21:58 EVNT.38776170._000107.pool.root.1
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc      6646 May 18 21:58 init_data.xml
[2024-05-19 02:01:19] drwxrwx--x 2 boinc boinc      4096 May 18 21:58 shared
[2024-05-19 02:01:19] -rw-r--r-- 2 boinc boinc    479998 May 18 21:58 input.tar.gz
[2024-05-19 02:01:19] -rw-r--r-- 2 boinc boinc     17537 May 18 21:58 start_atlas.sh
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc         0 May 18 21:58 boinc_lockfile
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc      2616 May 18 21:58 pandaJob.out
[2024-05-19 02:01:19] -rw------- 1 boinc boinc       424 May 18 21:58 setup.sh.local
[2024-05-19 02:01:19] -rw------- 1 boinc boinc   1019083 May 18 21:58 agis_schedconf.cvmfs.json
[2024-05-19 02:01:19] -rw------- 1 boinc boinc   1324701 May 18 21:58 cric_ddmendpoints.json
[2024-05-19 02:01:19] drwx------ 4 boinc boinc      4096 May 18 21:58 pilot3
[2024-05-19 02:01:19] -rw------- 1 boinc boinc 338901057 May 19 02:00 HITS.38920987._002841.pool.root.1
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc       531 May 19 02:00 boinc_task_state.xml
[2024-05-19 02:01:19] -rw------- 1 boinc boinc        95 May 19 02:00 pilot_heartbeat.json
[2024-05-19 02:01:19] -rw------- 1 boinc boinc      1046 May 19 02:00 memory_monitor_summary.json
[2024-05-19 02:01:19] -rw------- 1 boinc boinc         0 May 19 02:00 agis_ddmendpoints.agis.ALL.json
[2024-05-19 02:01:19] -rw------- 1 boinc boinc    363827 May 19 02:00 log.38920987._002841.job.log.tgz.1
[2024-05-19 02:01:19] -rw------- 1 boinc boinc      7722 May 19 02:00 heartbeat.json
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc      8192 May 19 02:01 boinc_mmap_file
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc        28 May 19 02:01 wrapper_checkpoint.txt
[2024-05-19 02:01:19] -rw------- 1 boinc boinc      4295 May 19 02:01 pilotlog.txt
[2024-05-19 02:01:19] -rw------- 1 boinc boinc   1634728 May 19 02:01 log.38920987._002841.job.log.1
[2024-05-19 02:01:19] -rw------- 1 boinc boinc       357 May 19 02:01 output.list
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc       620 May 19 02:01 runtime_log
[2024-05-19 02:01:19] -rw------- 1 boinc boinc   2017280 May 19 02:01 result.tar.gz
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc     11429 May 19 02:01 runtime_log.err
[2024-05-19 02:01:19] -rw------- 1 boinc boinc       659 May 19 02:01 fN4NDm6A1R5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm6oKKDmRULDNo.diag
[2024-05-19 02:01:19] -rw-r--r-- 1 boinc boinc     21418 May 19 02:01 stderr.txt
[2024-05-19 02:01:19] HITS file was successfully produced:
[2024-05-19 02:01:19] -rw------- 1 boinc boinc 338901057 May 19 02:00 shared/HITS.pool.root.1
[2024-05-19 02:01:19]  *** Contents of shared directory: ***
[2024-05-19 02:01:19] total 954928
[2024-05-19 02:01:19] -rw-r--r-- 2 boinc boinc 636409299 May 18 21:58 ATLAS.root_0
[2024-05-19 02:01:19] -rw-r--r-- 2 boinc boinc    479998 May 18 21:58 input.tar.gz
[2024-05-19 02:01:19] -rw-r--r-- 2 boinc boinc     17537 May 18 21:58 start_atlas.sh
[2024-05-19 02:01:19] -rw------- 1 boinc boinc 338901057 May 19 02:00 HITS.pool.root.1
[2024-05-19 02:01:19] -rw------- 1 boinc boinc   2017280 May 19 02:01 result.tar.gz
02:01:21 (137002): run_atlas exited; CPU time 54880.785629
02:01:21 (137002): called boinc_finish(0)

</stderr_txt>
]]>

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