Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:17:56 (2535883): wrapper (7.7.26015): starting
06:17:56 (2535883): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 06:17:56] Arguments: --nthreads 4
[2024-05-19 06:17:56] Threads: 4
[2024-05-19 06:17:56] Checking for CVMFS
[2024-05-19 06:17:56] No cvmfs_config command found, will try listing directly
[2024-05-19 06:17:56] CVMFS is ok
[2024-05-19 06:17:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 06:17:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 06:17:56] Further information can be found at the LHC@home message board.
[2024-05-19 06:17:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 06:17:56] Checking for apptainer binary...
[2024-05-19 06:17:56] which: no apptainer in ((null))
[2024-05-19 06:17:56] apptainer is not installed, using version from CVMFS
[2024-05-19 06:17:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 06:17:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2024-05-19 06:17:57] apptainer works
[2024-05-19 06:17:57] Set ATHENA_PROC_NUMBER=4
[2024-05-19 06:17:57] Set ATHENA_CORE_NUMBER=4
[2024-05-19 06:17:57] Starting ATLAS job with PandaID=6207649674
[2024-05-19 06:17:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 11:12:34]  *** The last 200 lines of the pilot log: ***
[2024-05-19 11:12:34] 2024-05-19 09:12:21,237 | INFO     | intersect: -24738282255.21889
[2024-05-19 11:12:34] 2024-05-19 09:12:21,238 | INFO     | chi2: 3.9128051743451113
[2024-05-19 11:12:34] 2024-05-19 09:12:21,238 | INFO     | model: linear, x: [1716092312.0, 1716092373.0, 1716092434.0, 1716092495.0, 1716092556.0, 1716092617.0, 1716092678.0, 1716092739.0, 1716092800.0, 1716092861.0, 1716
[2024-05-19 11:12:34] 2024-05-19 09:12:21,238 | INFO     | sum of square deviations: 7102775035.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,240 | INFO     | sum of deviations: 105965655472.99998
[2024-05-19 11:12:34] 2024-05-19 09:12:21,240 | INFO     | mean x: 1716100943.5
[2024-05-19 11:12:34] 2024-05-19 09:12:21,240 | INFO     | mean y: 2323798.8873239434
[2024-05-19 11:12:34] 2024-05-19 09:12:21,240 | INFO     | -- intersect: -25600030272.546562
[2024-05-19 11:12:34] 2024-05-19 09:12:21,240 | INFO     | intersect: -25600030272.546562
[2024-05-19 11:12:34] 2024-05-19 09:12:21,241 | INFO     | chi2: 3.914507587704934
[2024-05-19 11:12:34] 2024-05-19 09:12:21,241 | INFO     | current chi2=3.914507587704934 (change=-0.04350876887468897 %)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,241 | INFO     | right removable region: 283
[2024-05-19 11:12:34] 2024-05-19 09:12:21,241 | INFO     | model: linear, x: [1716092617.0, 1716092678.0, 1716092739.0, 1716092800.0, 1716092861.0, 1716092922.0, 1716092983.0, 1716093044.0, 1716093105.0, 1716093166.0, 1716
[2024-05-19 11:12:34] 2024-05-19 09:12:21,241 | INFO     | sum of square deviations: 7102775035.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,243 | INFO     | sum of deviations: 40948962578.499985
[2024-05-19 11:12:34] 2024-05-19 09:12:21,243 | INFO     | mean x: 1716101248.5
[2024-05-19 11:12:34] 2024-05-19 09:12:21,243 | INFO     | mean y: 2351260.6795774647
[2024-05-19 11:12:34] 2024-05-19 09:12:21,243 | INFO     | -- intersect: -9891326275.137747
[2024-05-19 11:12:34] 2024-05-19 09:12:21,243 | INFO     | intersect: -9891326275.137747
[2024-05-19 11:12:34] 2024-05-19 09:12:21,244 | INFO     | chi2: 1.4812224091008837
[2024-05-19 11:12:34] 2024-05-19 09:12:21,244 | INFO     | current chi2=1.4812224091008837 (change=62.1442330220595 %)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,244 | INFO     | model: linear, x: [1716092922.0, 1716092983.0, 1716093044.0, 1716093105.0, 1716093166.0, 1716093227.0, 1716093288.0, 1716093349.0, 1716093410.0, 1716093471.0, 1716
[2024-05-19 11:12:34] 2024-05-19 09:12:21,244 | INFO     | sum of square deviations: 6734191380.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | sum of deviations: -12333376011.999998
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | mean x: 1716101401.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | mean y: 2373306.663082437
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | -- intersect: 3145337719.006973
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | intersect: 3145337719.006973
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | chi2: 0.06559406489357035
[2024-05-19 11:12:34] 2024-05-19 09:12:21,246 | INFO     | current chi2=0.06559406489357035 (change=95.57162621288003 %)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,247 | INFO     | model: linear, x: [1716093227.0, 1716093288.0, 1716093349.0, 1716093410.0, 1716093471.0, 1716093532.0, 1716093593.0, 1716093654.0, 1716093715.0, 1716093776.0, 1716
[2024-05-19 11:12:34] 2024-05-19 09:12:21,247 | INFO     | sum of square deviations: 6378584712.5
[2024-05-19 11:12:34] 2024-05-19 09:12:21,248 | INFO     | sum of deviations: -19292042329.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | mean x: 1716101553.5
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | mean y: 2376267.5255474453
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | -- intersect: 5192728877.581075
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | intersect: 5192728877.581075
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | chi2: 0.020045880425352415
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | current chi2=0.020045880425352415 (change=69.43949051201834 %)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,249 | INFO     | model: linear, x: [1716093532.0, 1716093593.0, 1716093654.0, 1716093715.0, 1716093776.0, 1716093837.0, 1716093898.0, 1716093959.0, 1716094020.0, 1716094081.0, 1716
[2024-05-19 11:12:34] 2024-05-19 09:12:21,250 | INFO     | sum of square deviations: 6035722470.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,251 | INFO     | sum of deviations: -19061557001.000008
[2024-05-19 11:12:34] 2024-05-19 09:12:21,251 | INFO     | mean x: 1716101706.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,251 | INFO     | mean y: 2376164.3531598514
[2024-05-19 11:12:34] 2024-05-19 09:12:21,251 | INFO     | -- intersect: 5422037298.711505
[2024-05-19 11:12:34] 2024-05-19 09:12:21,251 | INFO     | intersect: 5422037298.711505
[2024-05-19 11:12:34] 2024-05-19 09:12:21,252 | INFO     | chi2: 0.019680700492237798
[2024-05-19 11:12:34] 2024-05-19 09:12:21,252 | INFO     | current chi2=0.019680700492237798 (change=1.821720599773542 %)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,252 | INFO     | left removable region: 40
[2024-05-19 11:12:34] 2024-05-19 09:12:21,252 | INFO     | model: linear, x: [1716094752.0, 1716094813.0, 1716094874.0, 1716094935.0, 1716094996.0, 1716095057.0, 1716095118.0, 1716095179.0, 1716095240.0, 1716095301.0, 1716
[2024-05-19 11:12:34] 2024-05-19 09:12:21,252 | INFO     | sum of square deviations: 4449281562.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,253 | INFO     | sum of deviations: -12635583554.000004
[2024-05-19 11:12:34] 2024-05-19 09:12:21,253 | INFO     | mean x: 1716102133.0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,254 | INFO     | mean y: 2373207.3333333335
[2024-05-19 11:12:34] 2024-05-19 09:12:21,254 | INFO     | -- intersect: 4875958208.991883
[2024-05-19 11:12:34] 2024-05-19 09:12:21,254 | INFO     | intersect: 4875958208.991883
[2024-05-19 11:12:34] 2024-05-19 09:12:21,254 | INFO     | chi2: 0.018182446993404534
[2024-05-19 11:12:34] 2024-05-19 09:12:21,254 | INFO     | -- intersect: 4875958208.991883
[2024-05-19 11:12:34] 2024-05-19 09:12:21,254 | INFO     | current memory leak: -2.84 B/s (using 243 data points, chi2=0.02)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | ..............................
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . Timing measurements:
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . get job = 0 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . initial setup = 1 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . payload setup = 5 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . stage-in = 0 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . payload execution = 17622 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . stage-out = 1 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | . log creation = 0 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,255 | INFO     | ..............................
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | 
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | job summary report
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | --------------------------------------------------
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | PanDA job id: 6207649674
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | task id: 38920995
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | errors: (none)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | pilot state: finished 
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | transexitcode: 0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | exeerrorcode: 0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,323 | INFO     | exeerrordiag: 
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | exitcode: 0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | exitmsg: OK
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | cpuconsumptiontime: 67766 s
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | nevents: 400
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | neventsw: 0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | pid: 2547398
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | pgrp: 2547398
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | corecount: 4
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | event service: False
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | sizes: {0: 2391220, 1: 2392155, 5: 2392361, 12: 2392417, 17631: 2424633, 17632: 2433615, 17635: 2433799, 17638: 2433969}
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | --------------------------------------------------
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | 
[2024-05-19 11:12:34] 2024-05-19 09:12:21,324 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,353 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | job 6207649674 has completed (purged errors)
[2024-05-19 11:12:34] 2024-05-19 09:12:21,354 | INFO     | overall cleanup function is called
[2024-05-19 11:12:34] 2024-05-19 09:12:22,361 | INFO     | --- collectZombieJob: --- 10, [2547398]
[2024-05-19 11:12:34] 2024-05-19 09:12:22,361 | INFO     | zombie collector waiting for pid 2547398
[2024-05-19 11:12:34] 2024-05-19 09:12:22,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 11:12:34] 2024-05-19 09:12:23,366 | INFO     | collected zombie processes
[2024-05-19 11:12:34] 2024-05-19 09:12:23,366 | INFO     | will now attempt to kill all subprocesses of pid=2547398
[2024-05-19 11:12:34] 2024-05-19 09:12:23,575 | INFO     | process IDs to be killed: [2547398] (in reverse order)
[2024-05-19 11:12:34] 2024-05-19 09:12:23,694 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 11:12:34] 2024-05-19 09:12:23,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 11:12:34] 2024-05-19 09:12:23,703 | INFO     | did not find any defunct processes belonging to 2547398
[2024-05-19 11:12:34] 2024-05-19 09:12:23,711 | INFO     | did not find any defunct processes belonging to 2547398
[2024-05-19 11:12:34] 2024-05-19 09:12:23,711 | INFO     | ready for new job
[2024-05-19 11:12:34] 2024-05-19 09:12:23,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 11:12:34] 2024-05-19 09:12:23,713 | INFO     | *************************************
[2024-05-19 11:12:34] 2024-05-19 09:12:23,714 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 11:12:34] 2024-05-19 09:12:23,714 | INFO     | *************************************
[2024-05-19 11:12:34] 2024-05-19 09:12:23,714 | INFO     | 
[2024-05-19 11:12:34] 2024-05-19 09:12:23,717 | INFO     | architecture information:
[2024-05-19 11:12:34] 2024-05-19 09:12:23,717 | INFO     | executing command: cat /etc/os-release
[2024-05-19 11:12:34] 2024-05-19 09:12:23,734 | INFO     | cat /etc/os-release:
[2024-05-19 11:12:34] NAME="CentOS Linux"
[2024-05-19 11:12:34] VERSION="7 (Core)"
[2024-05-19 11:12:34] ID="centos"
[2024-05-19 11:12:34] ID_LIKE="rhel fedora"
[2024-05-19 11:12:34] VERSION_ID="7"
[2024-05-19 11:12:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 11:12:34] ANSI_COLOR="0;31"
[2024-05-19 11:12:34] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 11:12:34] HOME_URL="https://www.centos.org/"
[2024-05-19 11:12:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 11:12:34] 
[2024-05-19 11:12:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 11:12:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 11:12:34] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 11:12:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 11:12:34] 
[2024-05-19 11:12:34] 2024-05-19 09:12:23,735 | INFO     | *************************************
[2024-05-19 11:12:34] 2024-05-19 09:12:24,237 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2024-05-19 11:12:34] 2024-05-19 09:12:24,257 | INFO     | sufficient remaining disk space (566644178944 B)
[2024-05-19 11:12:34] 2024-05-19 09:12:24,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 11:12:34] 2024-05-19 09:12:24,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 11:12:34] 2024-05-19 09:12:24,257 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 11:12:34] 2024-05-19 09:12:24,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 11:12:34] 2024-05-19 09:12:24,258 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 11:12:34] 2024-05-19 09:12:24,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 11:12:34] 2024-05-19 09:12:24,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 11:12:34] 2024-05-19 09:12:24,561 | INFO     | all data control threads have been joined
[2024-05-19 11:12:34] 2024-05-19 09:12:24,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 11:12:34] 2024-05-19 09:12:24,606 | INFO     | aborting loop
[2024-05-19 11:12:34] 2024-05-19 09:12:25,262 | INFO     | [job] retrieve thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:25,453 | INFO     | all job control threads have been joined
[2024-05-19 11:12:34] 2024-05-19 09:12:25,566 | INFO     | [data] control thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:25,611 | INFO     | [job] job monitor thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:25,748 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 11:12:34] 2024-05-19 09:12:25,749 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:25,757 | INFO     | all payload control threads have been joined
[2024-05-19 11:12:34] 2024-05-19 09:12:25,889 | INFO     | [payload] failed_post thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:25,972 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:25,973 | INFO     | [job] validate thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:26,326 | INFO     | [payload] validate_post thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:26,328 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:26,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 11:12:34] 2024-05-19 09:12:26,458 | INFO     | [job] control thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:26,583 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:26,632 | INFO     | [data] copytool_in thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:26,762 | INFO     | [payload] control thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:27,337 | INFO     | [job] queue monitor thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:27,751 | INFO     | [data] copytool_out thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:28,264 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 11:12:34] 2024-05-19 09:12:28,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47644485792832)>', '<ExcThread(monitor, started 47644659144448)>']
[2024-05-19 11:12:34] 2024-05-19 09:12:29,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 11:12:34] 2024-05-19 09:12:29,283 | INFO     | [monitor] control thread has ended
[2024-05-19 11:12:34] 2024-05-19 09:12:33,685 | INFO     | all workflow threads have been joined
[2024-05-19 11:12:34] 2024-05-19 09:12:33,686 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 11:12:34] 2024-05-19 09:12:33,686 | INFO     | traces error code: 0
[2024-05-19 11:12:34] 2024-05-19 09:12:33,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 11:12:34] 2024-05-19 09:12:33,785 [wrapper] ==== pilot stdout END ====
[2024-05-19 11:12:34] 2024-05-19 09:12:33,789 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 11:12:34] 2024-05-19 09:12:33,793 [wrapper] pilotpid: 2540286
[2024-05-19 11:12:34] 2024-05-19 09:12:33,797 [wrapper] Pilot exit status: 0
[2024-05-19 11:12:34] 2024-05-19 09:12:33,809 [wrapper] pandaids: 6207649674
[2024-05-19 11:12:34] 2024-05-19 09:12:33,907 [wrapper] cleanup: SIGTERM to supervisor_pilot 3016550 2540287
[2024-05-19 11:12:34] 2024-05-19 09:12:33,910 [wrapper] Test setup, not cleaning
[2024-05-19 11:12:34] 2024-05-19 09:12:33,914 [wrapper] ==== wrapper stdout END ====
[2024-05-19 11:12:34] 2024-05-19 09:12:33,918 [wrapper] ==== wrapper stderr END ====
[2024-05-19 11:12:34] 2024-05-19 09:12:33,925 [wrapper] apfmon messages muted
[2024-05-19 11:12:34]  *** Error codes and diagnostics ***
[2024-05-19 11:12:34]     "exeErrorCode": 0,
[2024-05-19 11:12:34]     "exeErrorDiag": "",
[2024-05-19 11:12:34]     "pilotErrorCode": 0,
[2024-05-19 11:12:34]     "pilotErrorDiag": "",
[2024-05-19 11:12:34]  *** Listing of results directory ***
[2024-05-19 11:12:34] total 966196
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc    467845 May 17 01:38 pilot3.tar.gz
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc      5633 May 17 02:15 queuedata.json
[2024-05-19 11:12:34] -rwx------ 1 boinc boinc     32251 May 17 02:16 runpilot2-wrapper.sh
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc       100 May 19 06:17 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 11:12:34] -rwxr-xr-x 1 boinc boinc      7986 May 19 06:17 run_atlas
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc       105 May 19 06:17 job.xml
[2024-05-19 11:12:34] -rw-r--r-- 2 boinc boinc 631797973 May 19 06:17 EVNT.38776180._000024.pool.root.1
[2024-05-19 11:12:34] -rw-r--r-- 2 boinc boinc     17537 May 19 06:17 start_atlas.sh
[2024-05-19 11:12:34] drwxrwx--x 2 boinc boinc      4096 May 19 06:17 shared
[2024-05-19 11:12:34] -rw-r--r-- 2 boinc boinc    480006 May 19 06:17 input.tar.gz
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc      6663 May 19 06:17 init_data.xml
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc         0 May 19 06:17 boinc_lockfile
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc      2609 May 19 06:17 pandaJob.out
[2024-05-19 11:12:34] -rw------- 1 boinc boinc       424 May 19 06:17 setup.sh.local
[2024-05-19 11:12:34] -rw------- 1 boinc boinc   1014003 May 19 06:18 agis_schedconf.cvmfs.json
[2024-05-19 11:12:34] -rw------- 1 boinc boinc   1324701 May 19 06:18 cric_ddmendpoints.json
[2024-05-19 11:12:34] drwx------ 4 boinc boinc      4096 May 19 06:18 pilot3
[2024-05-19 11:12:34] -rw------- 1 boinc boinc 349442401 May 19 11:11 HITS.38920995._004440.pool.root.1
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc       532 May 19 11:11 boinc_task_state.xml
[2024-05-19 11:12:34] -rw------- 1 boinc boinc        95 May 19 11:11 pilot_heartbeat.json
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc      8192 May 19 11:12 boinc_mmap_file
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc        28 May 19 11:12 wrapper_checkpoint.txt
[2024-05-19 11:12:34] -rw------- 1 boinc boinc      1051 May 19 11:12 memory_monitor_summary.json
[2024-05-19 11:12:34] -rw------- 1 boinc boinc         0 May 19 11:12 agis_ddmendpoints.agis.ALL.json
[2024-05-19 11:12:34] -rw------- 1 boinc boinc    373755 May 19 11:12 log.38920995._004440.job.log.tgz.1
[2024-05-19 11:12:34] -rw------- 1 boinc boinc      7762 May 19 11:12 heartbeat.json
[2024-05-19 11:12:34] -rw------- 1 boinc boinc      4344 May 19 11:12 pilotlog.txt
[2024-05-19 11:12:34] -rw------- 1 boinc boinc   1929580 May 19 11:12 log.38920995._004440.job.log.1
[2024-05-19 11:12:34] -rw------- 1 boinc boinc       357 May 19 11:12 output.list
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc       620 May 19 11:12 runtime_log
[2024-05-19 11:12:34] -rw------- 1 boinc boinc   2324480 May 19 11:12 result.tar.gz
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc     11410 May 19 11:12 runtime_log.err
[2024-05-19 11:12:34] -rw------- 1 boinc boinc       658 May 19 11:12 QKUKDm3R0R5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmwnKKDme9f3em.diag
[2024-05-19 11:12:34] -rw-r--r-- 1 boinc boinc     21369 May 19 11:12 stderr.txt
[2024-05-19 11:12:34] HITS file was successfully produced:
[2024-05-19 11:12:34] -rw------- 1 boinc boinc 349442401 May 19 11:11 shared/HITS.pool.root.1
[2024-05-19 11:12:34]  *** Contents of shared directory: ***
[2024-05-19 11:12:34] total 961020
[2024-05-19 11:12:34] -rw-r--r-- 2 boinc boinc 631797973 May 19 06:17 ATLAS.root_0
[2024-05-19 11:12:34] -rw-r--r-- 2 boinc boinc     17537 May 19 06:17 start_atlas.sh
[2024-05-19 11:12:34] -rw-r--r-- 2 boinc boinc    480006 May 19 06:17 input.tar.gz
[2024-05-19 11:12:34] -rw------- 1 boinc boinc 349442401 May 19 11:11 HITS.pool.root.1
[2024-05-19 11:12:34] -rw------- 1 boinc boinc   2324480 May 19 11:12 result.tar.gz
11:12:36 (2535883): run_atlas exited; CPU time 67361.953169
11:12:36 (2535883): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN