Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
09:35:27 (111952): wrapper (7.7.26015): starting
09:35:27 (111952): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 09:35:27] Arguments: --nthreads 12
[2024-05-17 09:35:27] Threads: 12
[2024-05-17 09:35:27] Checking for CVMFS
[2024-05-17 09:35:27] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 09:35:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 09:35:27] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 09:35:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 09:35:28] 2.9.2.0 165920 183616 125820 132848 1 59 23323610 45568000 4016 130560 0 621478701 99.780 414757904 14129 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-17 09:35:28] CVMFS is ok
[2024-05-17 09:35:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 09:35:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 09:35:28] Further information can be found at the LHC@home message board.
[2024-05-17 09:35:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 09:35:28] Checking for apptainer binary...
[2024-05-17 09:35:28] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 09:35:28] Running /usr/bin/apptainer --version
[2024-05-17 09:35:28] apptainer version 1.1.8-1.el7
[2024-05-17 09:35:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 09:35:28] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0038.triumf.lcg
[2024-05-17 09:35:28] apptainer works
[2024-05-17 09:35:28] Set ATHENA_PROC_NUMBER=12
[2024-05-17 09:35:28] Set ATHENA_CORE_NUMBER=12
[2024-05-17 09:35:29] Starting ATLAS job with PandaID=6207596105
[2024-05-17 09:35:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 11:12:48]  *** The last 200 lines of the pilot log: ***
[2024-05-17 11:12:48]  lfn=log.38920987._001871.job.log.tgz.1
[2024-05-17 11:12:48]  mtime=0
[2024-05-17 11:12:48]  protocol_id=None
[2024-05-17 11:12:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-17 11:12:48]  replicas=None
[2024-05-17 11:12:48]  scope=mc23_13p6TeV
[2024-05-17 11:12:48]  status=None
[2024-05-17 11:12:48]  status_code=0
[2024-05-17 11:12:48]  storage_token=
[2024-05-17 11:12:48]  surl=/home/boinc/slots/0/PanDA_Pilot-6207596105/log.38920987._001871.job.log.tgz.1
[2024-05-17 11:12:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/91/log.38920987._001871.job.log.tgz.1
[2024-05-17 11:12:48]  workdir=None
[2024-05-17 11:12:48] ]
[2024-05-17 11:12:48] 2024-05-17 18:12:11,996 | INFO     | transferring file log.38920987._001871.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6207596105/log.38920987._001871.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-17 11:12:48] 2024-05-17 18:12:11,996 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6207596105/log.38920987._001871.job.log.tgz.1 /home/boinc/slots/0/log.38920987._001871.job.log.t
[2024-05-17 11:12:48] 2024-05-17 18:12:12,054 | INFO     | adding to output.list: log.38920987._001871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/91/log.38920987._001871.job.log.tg
[2024-05-17 11:12:48] 2024-05-17 18:12:12,055 | INFO     | summary of transferred files:
[2024-05-17 11:12:48] 2024-05-17 18:12:12,055 | INFO     |  -- lfn=log.38920987._001871.job.log.tgz.1, status_code=0, status=transferred
[2024-05-17 11:12:48] 2024-05-17 18:12:12,056 | INFO     | stage-out finished correctly
[2024-05-17 11:12:48] 2024-05-17 18:12:12,870 | INFO     | monitor loop #455: job 0:6207596105 is in state 'finished'
[2024-05-17 11:12:48] 2024-05-17 18:12:12,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 11:12:48] 2024-05-17 18:12:14,015 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-17 11:12:48] 2024-05-17 18:12:15,375 | INFO     | monitor loop #456: job 0:6207596105 is in state 'finished'
[2024-05-17 11:12:48] 2024-05-17 18:12:15,375 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 11:12:48] 2024-05-17 18:12:16,463 | INFO     | job 6207596105 has state=finished
[2024-05-17 11:12:48] 2024-05-17 18:12:16,464 | INFO     | preparing for final server update for job 6207596105 in state='finished'
[2024-05-17 11:12:48] 2024-05-17 18:12:16,464 | INFO     | this job has now completed (state=finished)
[2024-05-17 11:12:48] 2024-05-17 18:12:16,465 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 11:12:48] 2024-05-17 18:12:16,465 | INFO     | job 6207596105 has finished - writing final server update
[2024-05-17 11:12:48] 2024-05-17 18:12:16,465 | INFO     | total number of processed events: 400 (read)
[2024-05-17 11:12:48] 2024-05-17 18:12:16,472 | INFO     | executing command: lscpu
[2024-05-17 11:12:48] 2024-05-17 18:12:16,558 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-17 11:12:48] 2024-05-17 18:12:16,558 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 11:12:48] 2024-05-17 18:12:16,655 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 11:12:48] 2024-05-17 18:12:17,878 | INFO     | monitor loop #457: job 0:6207596105 is in state 'finished'
[2024-05-17 11:12:48] 2024-05-17 18:12:17,879 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 11:12:48] 2024-05-17 18:12:20,382 | INFO     | monitor loop #458: job 0:6207596105 is in state 'finished'
[2024-05-17 11:12:48] 2024-05-17 18:12:20,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 11:12:48] 2024-05-17 18:12:22,887 | INFO     | monitor loop #459: job 0:6207596105 is in state 'finished'
[2024-05-17 11:12:48] 2024-05-17 18:12:22,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 11:12:48] 2024-05-17 18:12:25,203 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-17 11:12:48] 2024-05-17 18:12:25,203 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6207596105/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 11:12:48] 2024-05-17 18:12:25,205 | INFO     | extracted standard info from prmon json
[2024-05-17 11:12:48] 2024-05-17 18:12:25,205 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 11:12:48] 2024-05-17 18:12:25,205 | WARNING  | GPU info not found in prmon json
[2024-05-17 11:12:48] 2024-05-17 18:12:25,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 11:12:48] 2024-05-17 18:12:25,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 11:12:48] 2024-05-17 18:12:25,209 | INFO     | fitting pss+swap vs Time
[2024-05-17 11:12:48] 2024-05-17 18:12:25,210 | INFO     | model: linear, x: [1715964095.0, 1715964156.0, 1715964217.0, 1715964278.0, 1715964339.0, 1715964400.0, 1715964461.0, 1715964522.0, 1715964583.0, 1715964644.0, 1715
[2024-05-17 11:12:48] 2024-05-17 18:12:25,210 | INFO     | sum of square deviations: 211285822.0
[2024-05-17 11:12:48] 2024-05-17 18:12:25,211 | INFO     | sum of deviations: 22941497716.5
[2024-05-17 11:12:48] 2024-05-17 18:12:25,211 | INFO     | mean x: 1715966748.5
[2024-05-17 11:12:48] 2024-05-17 18:12:25,211 | INFO     | mean y: 2717049.625
[2024-05-17 11:12:48] 2024-05-17 18:12:25,211 | INFO     | -- intersect: -186317627920.34027
[2024-05-17 11:12:48] 2024-05-17 18:12:25,211 | INFO     | intersect: -186317627920.34027
[2024-05-17 11:12:48] 2024-05-17 18:12:25,211 | INFO     | chi2: 2.5850505600093308
[2024-05-17 11:12:48] 2024-05-17 18:12:25,212 | INFO     | -- intersect: -186317627920.34027
[2024-05-17 11:12:48] 2024-05-17 18:12:25,212 | INFO     | current memory leak: 108.58 B/s (using 88 data points, chi2=2.59)
[2024-05-17 11:12:48] 2024-05-17 18:12:25,212 | INFO     | ..............................
[2024-05-17 11:12:48] 2024-05-17 18:12:25,212 | INFO     | . Timing measurements:
[2024-05-17 11:12:48] 2024-05-17 18:12:25,212 | INFO     | . get job = 0 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | . initial setup = 2 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | . payload setup = 10 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | . stage-in = 0 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | . payload execution = 5748 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | . stage-out = 1 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | . log creation = 0 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,213 | INFO     | ..............................
[2024-05-17 11:12:48] 2024-05-17 18:12:25,302 | INFO     | 
[2024-05-17 11:12:48] 2024-05-17 18:12:25,302 | INFO     | job summary report
[2024-05-17 11:12:48] 2024-05-17 18:12:25,302 | INFO     | --------------------------------------------------
[2024-05-17 11:12:48] 2024-05-17 18:12:25,302 | INFO     | PanDA job id: 6207596105
[2024-05-17 11:12:48] 2024-05-17 18:12:25,302 | INFO     | task id: 38920987
[2024-05-17 11:12:48] 2024-05-17 18:12:25,302 | INFO     | errors: (none)
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | pilot state: finished 
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | transexitcode: 0
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | exeerrorcode: 0
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | exeerrordiag: 
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | exitcode: 0
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | exitmsg: OK
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | cpuconsumptiontime: 56593 s
[2024-05-17 11:12:48] 2024-05-17 18:12:25,303 | INFO     | nevents: 400
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | neventsw: 0
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | pid: 141888
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | pgrp: 141888
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | corecount: 12
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | event service: False
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | sizes: {0: 2391951, 1: 2392150, 9: 2392356, 11: 2392384, 5762: 2419054, 5763: 2419053, 5764: 2428191, 5766: 2428247, 5777: 2428417}
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | --------------------------------------------------
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | 
[2024-05-17 11:12:48] 2024-05-17 18:12:25,304 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-17 11:12:48] 2024-05-17 18:12:25,359 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,360 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,360 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,360 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,362 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 11:12:48] 2024-05-17 18:12:25,363 | INFO     | job 6207596105 has completed (purged errors)
[2024-05-17 11:12:48] 2024-05-17 18:12:25,363 | INFO     | overall cleanup function is called
[2024-05-17 11:12:48] 2024-05-17 18:12:26,373 | INFO     | --- collectZombieJob: --- 10, [141888]
[2024-05-17 11:12:48] 2024-05-17 18:12:26,373 | INFO     | zombie collector waiting for pid 141888
[2024-05-17 11:12:48] 2024-05-17 18:12:26,373 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 11:12:48] 2024-05-17 18:12:27,379 | INFO     | collected zombie processes
[2024-05-17 11:12:48] 2024-05-17 18:12:27,379 | INFO     | will now attempt to kill all subprocesses of pid=141888
[2024-05-17 11:12:48] 2024-05-17 18:12:27,524 | INFO     | process IDs to be killed: [141888] (in reverse order)
[2024-05-17 11:12:48] 2024-05-17 18:12:27,676 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 11:12:48] 2024-05-17 18:12:27,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 11:12:48] 2024-05-17 18:12:27,685 | INFO     | did not find any defunct processes belonging to 141888
[2024-05-17 11:12:48] 2024-05-17 18:12:27,692 | INFO     | did not find any defunct processes belonging to 141888
[2024-05-17 11:12:48] 2024-05-17 18:12:27,692 | INFO     | ready for new job
[2024-05-17 11:12:48] 2024-05-17 18:12:27,692 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 11:12:48] 2024-05-17 18:12:27,694 | INFO     | *************************************
[2024-05-17 11:12:48] 2024-05-17 18:12:27,695 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 11:12:48] 2024-05-17 18:12:27,695 | INFO     | *************************************
[2024-05-17 11:12:48] 2024-05-17 18:12:27,695 | INFO     | 
[2024-05-17 11:12:48] 2024-05-17 18:12:27,699 | INFO     | architecture information:
[2024-05-17 11:12:48] 2024-05-17 18:12:27,699 | INFO     | executing command: cat /etc/os-release
[2024-05-17 11:12:48] 2024-05-17 18:12:27,744 | INFO     | cat /etc/os-release:
[2024-05-17 11:12:48] NAME="CentOS Linux"
[2024-05-17 11:12:48] VERSION="7 (Core)"
[2024-05-17 11:12:48] ID="centos"
[2024-05-17 11:12:48] ID_LIKE="rhel fedora"
[2024-05-17 11:12:48] VERSION_ID="7"
[2024-05-17 11:12:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 11:12:48] ANSI_COLOR="0;31"
[2024-05-17 11:12:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 11:12:48] HOME_URL="https://www.centos.org/"
[2024-05-17 11:12:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 11:12:48] 
[2024-05-17 11:12:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 11:12:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 11:12:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 11:12:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 11:12:48] 
[2024-05-17 11:12:48] 2024-05-17 18:12:27,745 | INFO     | *************************************
[2024-05-17 11:12:48] 2024-05-17 18:12:28,248 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-17 11:12:48] 2024-05-17 18:12:28,298 | INFO     | sufficient remaining disk space (2126908489728 B)
[2024-05-17 11:12:48] 2024-05-17 18:12:28,299 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 11:12:48] 2024-05-17 18:12:28,299 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 11:12:48] 2024-05-17 18:12:28,300 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 11:12:48] 2024-05-17 18:12:28,300 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 11:12:48] 2024-05-17 18:12:28,301 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 11:12:48] 2024-05-17 18:12:28,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 11:12:48] 2024-05-17 18:12:28,301 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 11:12:48] 2024-05-17 18:12:28,520 | INFO     | all job control threads have been joined
[2024-05-17 11:12:48] 2024-05-17 18:12:28,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 11:12:48] 2024-05-17 18:12:28,906 | INFO     | aborting loop
[2024-05-17 11:12:48] 2024-05-17 18:12:28,908 | INFO     | all data control threads have been joined
[2024-05-17 11:12:48] 2024-05-17 18:12:29,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 11:12:48] 2024-05-17 18:12:29,305 | INFO     | [job] retrieve thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,342 | INFO     | [job] validate thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,416 | INFO     | all payload control threads have been joined
[2024-05-17 11:12:48] 2024-05-17 18:12:29,450 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,527 | INFO     | [job] control thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,636 | INFO     | [payload] validate_post thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,727 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,912 | INFO     | [job] job monitor thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:29,914 | INFO     | [data] control thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:30,222 | INFO     | [data] copytool_in thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:30,302 | INFO     | [data] copytool_out thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:30,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 11:12:48] 2024-05-17 18:12:30,322 | INFO     | [payload] failed_post thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:30,422 | INFO     | [payload] control thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:30,580 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:31,323 | INFO     | [job] queue monitor thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:33,132 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:39,265 | INFO     | job.realtimelogging is not enabled
[2024-05-17 11:12:48] 2024-05-17 18:12:40,271 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 11:12:48] 2024-05-17 18:12:42,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140179022669632)>', '<ExcThread(monitor, started 140178471515904)>']
[2024-05-17 11:12:48] 2024-05-17 18:12:42,376 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 11:12:48] 2024-05-17 18:12:42,377 | INFO     | [monitor] control thread has ended
[2024-05-17 11:12:48] 2024-05-17 18:12:47,310 | INFO     | all workflow threads have been joined
[2024-05-17 11:12:48] 2024-05-17 18:12:47,310 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 11:12:48] 2024-05-17 18:12:47,310 | INFO     | traces error code: 0
[2024-05-17 11:12:48] 2024-05-17 18:12:47,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 11:12:48] 2024-05-17 18:12:47,376 [wrapper] ==== pilot stdout END ====
[2024-05-17 11:12:48] 2024-05-17 18:12:47,387 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 11:12:48] 2024-05-17 18:12:47,398 [wrapper] pilotpid: 122725
[2024-05-17 11:12:48] 2024-05-17 18:12:47,409 [wrapper] Pilot exit status: 0
[2024-05-17 11:12:48] 2024-05-17 18:12:47,444 [wrapper] pandaids: 6207596105
[2024-05-17 11:12:48] 2024-05-17 18:12:47,516 [wrapper] cleanup: SIGTERM to supervisor_pilot 260704 122726
[2024-05-17 11:12:48] 2024-05-17 18:12:47,527 [wrapper] Test setup, not cleaning
[2024-05-17 11:12:48] 2024-05-17 18:12:47,538 [wrapper] ==== wrapper stdout END ====
[2024-05-17 11:12:48] 2024-05-17 18:12:47,552 [wrapper] ==== wrapper stderr END ====
[2024-05-17 11:12:48] 2024-05-17 18:12:47,572 [wrapper] apfmon messages muted
[2024-05-17 11:12:48]  *** Error codes and diagnostics ***
[2024-05-17 11:12:48]     "exeErrorCode": 0,
[2024-05-17 11:12:48]     "exeErrorDiag": "",
[2024-05-17 11:12:48]     "pilotErrorCode": 0,
[2024-05-17 11:12:48]     "pilotErrorDiag": "",
[2024-05-17 11:12:48]  *** Listing of results directory ***
[2024-05-17 11:12:48] total 958128
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc    467845 May 16 13:34 pilot3.tar.gz
[2024-05-17 11:12:48] -rwx------ 1 boinc boinc     32251 May 16 13:43 runpilot2-wrapper.sh
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc      5633 May 16 13:43 queuedata.json
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc       100 May 17 09:35 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 11:12:48] -rwxr-xr-x 1 boinc boinc      7986 May 17 09:35 run_atlas
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc       105 May 17 09:35 job.xml
[2024-05-17 11:12:48] -rw-r--r-- 2 boinc boinc 638352591 May 17 09:35 EVNT.38776170._000068.pool.root.1
[2024-05-17 11:12:48] -rw-r--r-- 2 boinc boinc     17537 May 17 09:35 start_atlas.sh
[2024-05-17 11:12:48] drwxrwx--x 2 boinc boinc      4096 May 17 09:35 shared
[2024-05-17 11:12:48] -rw-r--r-- 2 boinc boinc    480004 May 17 09:35 input.tar.gz
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc      6627 May 17 09:35 init_data.xml
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc         0 May 17 09:35 boinc_lockfile
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc      2615 May 17 09:35 pandaJob.out
[2024-05-17 11:12:48] -rw------- 1 boinc boinc       424 May 17 09:35 setup.sh.local
[2024-05-17 11:12:48] -rw------- 1 boinc boinc   1019452 May 17 09:35 agis_schedconf.cvmfs.json
[2024-05-17 11:12:48] -rw------- 1 boinc boinc         0 May 17 09:35 agis_ddmendpoints.agis.ALL.json
[2024-05-17 11:12:48] -rw------- 1 boinc boinc   1324701 May 17 09:35 cric_ddmendpoints.json
[2024-05-17 11:12:48] drwx------ 4 boinc boinc      4096 May 17 09:35 pilot3
[2024-05-17 11:12:48] -rw------- 1 boinc boinc 337326659 May 17 11:11 HITS.38920987._001871.pool.root.1
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc       530 May 17 11:12 boinc_task_state.xml
[2024-05-17 11:12:48] -rw------- 1 boinc boinc        95 May 17 11:12 pilot_heartbeat.json
[2024-05-17 11:12:48] -rw------- 1 boinc boinc      1045 May 17 11:12 memory_monitor_summary.json
[2024-05-17 11:12:48] -rw------- 1 boinc boinc    389692 May 17 11:12 log.38920987._001871.job.log.tgz.1
[2024-05-17 11:12:48] -rw------- 1 boinc boinc      7766 May 17 11:12 heartbeat.json
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc      8192 May 17 11:12 boinc_mmap_file
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc        27 May 17 11:12 wrapper_checkpoint.txt
[2024-05-17 11:12:48] -rw------- 1 boinc boinc      4405 May 17 11:12 pilotlog.txt
[2024-05-17 11:12:48] -rw------- 1 boinc boinc    564925 May 17 11:12 log.38920987._001871.job.log.1
[2024-05-17 11:12:48] -rw------- 1 boinc boinc       357 May 17 11:12 output.list
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc       620 May 17 11:12 runtime_log
[2024-05-17 11:12:48] -rw------- 1 boinc boinc    972800 May 17 11:12 result.tar.gz
[2024-05-17 11:12:48] -rw------- 1 boinc boinc       655 May 17 11:12 vahMDmM8wR5nsSi4apGgGQJmABFKDmABFKDm4ySLDm86PKDmRKVGYo.diag
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc     11286 May 17 11:12 runtime_log.err
[2024-05-17 11:12:48] -rw-r--r-- 1 boinc boinc     22038 May 17 11:12 stderr.txt
[2024-05-17 11:12:48] HITS file was successfully produced:
[2024-05-17 11:12:48] -rw------- 1 boinc boinc 337326659 May 17 11:11 shared/HITS.pool.root.1
[2024-05-17 11:12:48]  *** Contents of shared directory: ***
[2024-05-17 11:12:48] total 954268
[2024-05-17 11:12:48] -rw-r--r-- 2 boinc boinc 638352591 May 17 09:35 ATLAS.root_0
[2024-05-17 11:12:48] -rw-r--r-- 2 boinc boinc     17537 May 17 09:35 start_atlas.sh
[2024-05-17 11:12:48] -rw-r--r-- 2 boinc boinc    480004 May 17 09:35 input.tar.gz
[2024-05-17 11:12:48] -rw------- 1 boinc boinc 337326659 May 17 11:11 HITS.pool.root.1
[2024-05-17 11:12:48] -rw------- 1 boinc boinc    972800 May 17 11:12 result.tar.gz
11:12:49 (111952): run_atlas exited; CPU time 56400.349125
11:12:49 (111952): called boinc_finish(0)

</stderr_txt>
]]>

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