Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:46 (58795): wrapper (7.7.26015): starting
10:33:46 (58795): wrapper: running run_atlas (--nthreads 8)
[2024-05-17 10:33:46] Arguments: --nthreads 8
[2024-05-17 10:33:46] Threads: 8
[2024-05-17 10:33:46] Checking for CVMFS
[2024-05-17 10:33:46] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 10:33:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 10:33:46] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 10:33:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 10:33:46] 2.11.2.0 56104 1267 87260 132844 1 271 15631290 18432000 18459 130560 0 3234267 98.131 13570559 57773 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-17 10:33:46] CVMFS is ok
[2024-05-17 10:33:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 10:33:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 10:33:46] Further information can be found at the LHC@home message board.
[2024-05-17 10:33:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 10:33:46] Checking for apptainer binary...
[2024-05-17 10:33:46] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-17 10:33:46] Running /usr/bin/apptainer --version
[2024-05-17 10:33:46] apptainer version 1.3.0-1.el7
[2024-05-17 10:33:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 10:33:48] c-212-9.aglt2.org
[2024-05-17 10:33:48] apptainer works
[2024-05-17 10:33:48] Set ATHENA_PROC_NUMBER=8
[2024-05-17 10:33:48] Set ATHENA_CORE_NUMBER=8
[2024-05-17 10:33:48] Starting ATLAS job with PandaID=6207477809
[2024-05-17 10:33:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 19:59:29]  *** The last 200 lines of the pilot log: ***
[2024-05-17 19:59:29] 2024-05-17 23:59:10,089 | INFO     | model: linear, x: [1715956527.0, 1715956588.0, 1715956649.0, 1715956710.0, 1715956771.0, 1715956832.0, 1715956893.0, 1715956954.0, 1715957015.0, 1715957076.0, 1715
[2024-05-17 19:59:29] 2024-05-17 23:59:10,089 | INFO     | sum of square deviations: 51309106921.11822
[2024-05-17 19:59:29] 2024-05-17 23:59:10,093 | INFO     | sum of deviations: 457423878886.1999
[2024-05-17 19:59:29] 2024-05-17 23:59:10,093 | INFO     | mean x: 1715973241.040073
[2024-05-17 19:59:29] 2024-05-17 23:59:10,093 | INFO     | mean y: 2521156.990892532
[2024-05-17 19:59:29] 2024-05-17 23:59:10,093 | INFO     | -- intersect: -15295486995.600971
[2024-05-17 19:59:29] 2024-05-17 23:59:10,093 | INFO     | intersect: -15295486995.600971
[2024-05-17 19:59:29] 2024-05-17 23:59:10,094 | INFO     | chi2: 5.829636003055421
[2024-05-17 19:59:29] 2024-05-17 23:59:10,094 | INFO     | current chi2=5.829636003055421 (change=11.518529409753777 %)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,094 | INFO     | right removable region: 548
[2024-05-17 19:59:29] 2024-05-17 23:59:10,094 | INFO     | model: linear, x: [1715956832.0, 1715956893.0, 1715956954.0, 1715957015.0, 1715957076.0, 1715957137.0, 1715957198.0, 1715957259.0, 1715957320.0, 1715957381.0, 1715
[2024-05-17 19:59:29] 2024-05-17 23:59:10,095 | INFO     | sum of square deviations: 51309126808.036476
[2024-05-17 19:59:29] 2024-05-17 23:59:10,099 | INFO     | sum of deviations: 263266739676.7433
[2024-05-17 19:59:29] 2024-05-17 23:59:10,099 | INFO     | mean x: 1715973546.0418944
[2024-05-17 19:59:29] 2024-05-17 23:59:10,099 | INFO     | mean y: 2534995.0546448086
[2024-05-17 19:59:29] 2024-05-17 23:59:10,099 | INFO     | -- intersect: -8802112227.420229
[2024-05-17 19:59:29] 2024-05-17 23:59:10,099 | INFO     | intersect: -8802112227.420229
[2024-05-17 19:59:29] 2024-05-17 23:59:10,100 | INFO     | chi2: 3.5193019570706543
[2024-05-17 19:59:29] 2024-05-17 23:59:10,100 | INFO     | current chi2=3.5193019570706543 (change=46.58448444301905 %)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,100 | INFO     | model: linear, x: [1715957137.0, 1715957198.0, 1715957259.0, 1715957320.0, 1715957381.0, 1715957442.0, 1715957503.0, 1715957564.0, 1715957625.0, 1715957686.0, 1715
[2024-05-17 19:59:29] 2024-05-17 23:59:10,100 | INFO     | sum of square deviations: 49919958863.02764
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | sum of deviations: 136085593151.55154
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | mean x: 1715973698.5422795
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | mean y: 2548956.845588235
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | -- intersect: -4675325462.869526
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | intersect: -4675325462.869526
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | chi2: 1.7252161894424534
[2024-05-17 19:59:29] 2024-05-17 23:59:10,105 | INFO     | current chi2=1.7252161894424534 (change=50.978455088904504 %)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,106 | INFO     | model: linear, x: [1715957442.0, 1715957503.0, 1715957564.0, 1715957625.0, 1715957686.0, 1715957747.0, 1715957808.0, 1715957869.0, 1715957930.0, 1715957991.0, 1715
[2024-05-17 19:59:29] 2024-05-17 23:59:10,106 | INFO     | sum of square deviations: 48556093718.01863
[2024-05-17 19:59:29] 2024-05-17 23:59:10,110 | INFO     | sum of deviations: 55606354335.86639
[2024-05-17 19:59:29] 2024-05-17 23:59:10,110 | INFO     | mean x: 1715973851.0426717
[2024-05-17 19:59:29] 2024-05-17 23:59:10,110 | INFO     | mean y: 2557934.0927643785
[2024-05-17 19:59:29] 2024-05-17 23:59:10,110 | INFO     | -- intersect: -1962572344.8438022
[2024-05-17 19:59:29] 2024-05-17 23:59:10,110 | INFO     | intersect: -1962572344.8438022
[2024-05-17 19:59:29] 2024-05-17 23:59:10,111 | INFO     | chi2: 0.8543634183368304
[2024-05-17 19:59:29] 2024-05-17 23:59:10,111 | INFO     | current chi2=0.8543634183368304 (change=50.47789236125014 %)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,111 | INFO     | model: linear, x: [1715957747.0, 1715957808.0, 1715957869.0, 1715957930.0, 1715957991.0, 1715958052.0, 1715958113.0, 1715958174.0, 1715958235.0, 1715958296.0, 1715
[2024-05-17 19:59:29] 2024-05-17 23:59:10,112 | INFO     | sum of square deviations: 47217298810.509254
[2024-05-17 19:59:29] 2024-05-17 23:59:10,116 | INFO     | sum of deviations: 33078302319.823982
[2024-05-17 19:59:29] 2024-05-17 23:59:10,116 | INFO     | mean x: 1715974003.5430713
[2024-05-17 19:59:29] 2024-05-17 23:59:10,116 | INFO     | mean y: 2560493.7902621725
[2024-05-17 19:59:29] 2024-05-17 23:59:10,116 | INFO     | -- intersect: -1199573221.8623345
[2024-05-17 19:59:29] 2024-05-17 23:59:10,116 | INFO     | intersect: -1199573221.8623345
[2024-05-17 19:59:29] 2024-05-17 23:59:10,116 | INFO     | chi2: 0.7873215218612292
[2024-05-17 19:59:29] 2024-05-17 23:59:10,117 | INFO     | current chi2=0.7873215218612292 (change=7.846999887484666 %)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,117 | INFO     | left removable region: 40
[2024-05-17 19:59:29] 2024-05-17 23:59:10,117 | INFO     | model: linear, x: [1715958967.0, 1715959028.0, 1715959089.0, 1715959150.0, 1715959211.0, 1715959272.0, 1715959333.0, 1715959395.0, 1715959455.0, 1715959516.0, 1715
[2024-05-17 19:59:29] 2024-05-17 23:59:10,117 | INFO     | sum of square deviations: 40650685440.0472
[2024-05-17 19:59:29] 2024-05-17 23:59:10,121 | INFO     | sum of deviations: 56712359145.29914
[2024-05-17 19:59:29] 2024-05-17 23:59:10,121 | INFO     | mean x: 1715974430.543307
[2024-05-17 19:59:29] 2024-05-17 23:59:10,121 | INFO     | mean y: 2565909.440944882
[2024-05-17 19:59:29] 2024-05-17 23:59:10,121 | INFO     | -- intersect: -2391414834.934154
[2024-05-17 19:59:29] 2024-05-17 23:59:10,121 | INFO     | intersect: -2391414834.934154
[2024-05-17 19:59:29] 2024-05-17 23:59:10,122 | INFO     | chi2: 0.0026996833372576147
[2024-05-17 19:59:29] 2024-05-17 23:59:10,122 | INFO     | -- intersect: -2391414834.934154
[2024-05-17 19:59:29] 2024-05-17 23:59:10,122 | INFO     | current memory leak: 1.40 B/s (using 508 data points, chi2=0.00)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | ..............................
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . Timing measurements:
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . get job = 0 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . initial setup = 2 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . payload setup = 16 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . stage-in = 0 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . payload execution = 33781 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . stage-out = 5 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | . log creation = 0 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,123 | INFO     | ..............................
[2024-05-17 19:59:29] 2024-05-17 23:59:10,196 | INFO     | 
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | job summary report
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | --------------------------------------------------
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | PanDA job id: 6207477809
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | task id: 38920995
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | errors: (none)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | pilot state: finished 
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | transexitcode: 0
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | exeerrorcode: 0
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | exeerrordiag: 
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | exitcode: 0
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | exitmsg: OK
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | cpuconsumptiontime: 102009 s
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | nevents: 400
[2024-05-17 19:59:29] 2024-05-17 23:59:10,197 | INFO     | neventsw: 0
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | pid: 13138
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | pgrp: 13138
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | corecount: 8
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | event service: False
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | sizes: {0: 2390615, 1: 2392151, 12: 2392385, 22: 2392385, 33802: 2431638, 33808: 2440598, 33811: 2440782, 33860: 2440952}
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | --------------------------------------------------
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | 
[2024-05-17 19:59:29] 2024-05-17 23:59:10,198 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,467 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | job 6207477809 has completed (purged errors)
[2024-05-17 19:59:29] 2024-05-17 23:59:10,468 | INFO     | overall cleanup function is called
[2024-05-17 19:59:29] 2024-05-17 23:59:11,485 | INFO     | --- collectZombieJob: --- 10, [13138]
[2024-05-17 19:59:29] 2024-05-17 23:59:11,486 | INFO     | zombie collector waiting for pid 13138
[2024-05-17 19:59:29] 2024-05-17 23:59:11,486 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 19:59:29] 2024-05-17 23:59:12,488 | INFO     | collected zombie processes
[2024-05-17 19:59:29] 2024-05-17 23:59:12,488 | INFO     | will now attempt to kill all subprocesses of pid=13138
[2024-05-17 19:59:29] 2024-05-17 23:59:12,788 | INFO     | process IDs to be killed: [13138] (in reverse order)
[2024-05-17 19:59:29] 2024-05-17 23:59:14,017 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 19:59:29] 2024-05-17 23:59:14,017 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 19:59:29] 2024-05-17 23:59:14,027 | INFO     | did not find any defunct processes belonging to 13138
[2024-05-17 19:59:29] 2024-05-17 23:59:14,035 | INFO     | did not find any defunct processes belonging to 13138
[2024-05-17 19:59:29] 2024-05-17 23:59:14,035 | INFO     | ready for new job
[2024-05-17 19:59:29] 2024-05-17 23:59:14,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 19:59:29] 2024-05-17 23:59:14,038 | INFO     | *************************************
[2024-05-17 19:59:29] 2024-05-17 23:59:14,038 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 19:59:29] 2024-05-17 23:59:14,038 | INFO     | *************************************
[2024-05-17 19:59:29] 2024-05-17 23:59:14,038 | INFO     | 
[2024-05-17 19:59:29] 2024-05-17 23:59:14,041 | INFO     | architecture information:
[2024-05-17 19:59:29] 2024-05-17 23:59:14,043 | INFO     | executing command: cat /etc/os-release
[2024-05-17 19:59:29] 2024-05-17 23:59:14,117 | INFO     | cat /etc/os-release:
[2024-05-17 19:59:29] NAME="CentOS Linux"
[2024-05-17 19:59:29] VERSION="7 (Core)"
[2024-05-17 19:59:29] ID="centos"
[2024-05-17 19:59:29] ID_LIKE="rhel fedora"
[2024-05-17 19:59:29] VERSION_ID="7"
[2024-05-17 19:59:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 19:59:29] ANSI_COLOR="0;31"
[2024-05-17 19:59:29] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 19:59:29] HOME_URL="https://www.centos.org/"
[2024-05-17 19:59:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 19:59:29] 
[2024-05-17 19:59:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 19:59:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 19:59:29] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 19:59:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 19:59:29] 
[2024-05-17 19:59:29] 2024-05-17 23:59:14,117 | INFO     | *************************************
[2024-05-17 19:59:29] 2024-05-17 23:59:14,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2024-05-17 19:59:29] 2024-05-17 23:59:14,693 | INFO     | sufficient remaining disk space (96907296768 B)
[2024-05-17 19:59:29] 2024-05-17 23:59:14,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 19:59:29] 2024-05-17 23:59:14,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 19:59:29] 2024-05-17 23:59:14,696 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-17 19:59:29] 2024-05-17 23:59:14,697 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 19:59:29] 2024-05-17 23:59:14,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 19:59:29] 2024-05-17 23:59:14,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 19:59:29] 2024-05-17 23:59:14,710 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-17 19:59:29] 2024-05-17 23:59:14,710 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-17 19:59:29] 2024-05-17 23:59:14,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 19:59:29] 2024-05-17 23:59:14,710 | INFO     | will abort loop
[2024-05-17 19:59:29] 2024-05-17 23:59:15,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 19:59:29] 2024-05-17 23:59:15,296 | INFO     | all payload control threads have been joined
[2024-05-17 19:59:29] 2024-05-17 23:59:15,397 | INFO     | all job control threads have been joined
[2024-05-17 19:59:29] 2024-05-17 23:59:15,510 | INFO     | all data control threads have been joined
[2024-05-17 19:59:29] 2024-05-17 23:59:15,702 | INFO     | [job] retrieve thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:15,716 | INFO     | [job] job monitor thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:15,724 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,110 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 19:59:29] 2024-05-17 23:59:16,217 | INFO     | [job] queue monitor thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,224 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,228 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,254 | INFO     | [job] validate thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,264 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,272 | INFO     | [data] copytool_in thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,305 | INFO     | [payload] control thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,402 | INFO     | [job] control thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,517 | INFO     | [data] control thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:16,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 19:59:29] 2024-05-17 23:59:17,080 | INFO     | [payload] validate_post thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:17,165 | INFO     | [payload] failed_post thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:18,117 | INFO     | [data] copytool_out thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:20,838 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 19:59:29] 2024-05-17 23:59:21,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623046821696)>', '<ExcThread(monitor, started 140622774126336)>']
[2024-05-17 19:59:29] 2024-05-17 23:59:21,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 19:59:29] 2024-05-17 23:59:21,755 | INFO     | [monitor] control thread has ended
[2024-05-17 19:59:29] 2024-05-17 23:59:26,246 | INFO     | all workflow threads have been joined
[2024-05-17 19:59:29] 2024-05-17 23:59:26,248 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 19:59:29] 2024-05-17 23:59:26,260 | INFO     | traces error code: 0
[2024-05-17 19:59:29] 2024-05-17 23:59:26,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 19:59:29] 2024-05-17 23:59:26,994 [wrapper] ==== pilot stdout END ====
[2024-05-17 19:59:29] 2024-05-17 23:59:27,060 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 19:59:29] 2024-05-17 23:59:27,173 [wrapper] pilotpid: 77142
[2024-05-17 19:59:29] 2024-05-17 23:59:27,211 [wrapper] Pilot exit status: 0
[2024-05-17 19:59:29] 2024-05-17 23:59:27,395 [wrapper] pandaids: 6207477809
[2024-05-17 19:59:29] 2024-05-17 23:59:27,871 [wrapper] cleanup: SIGTERM to supervisor_pilot 72539 77143
[2024-05-17 19:59:29] 2024-05-17 23:59:27,874 [wrapper] Test setup, not cleaning
[2024-05-17 19:59:29] 2024-05-17 23:59:27,877 [wrapper] ==== wrapper stdout END ====
[2024-05-17 19:59:29] 2024-05-17 23:59:27,886 [wrapper] ==== wrapper stderr END ====
[2024-05-17 19:59:29] 2024-05-17 23:59:27,935 [wrapper] apfmon messages muted
[2024-05-17 19:59:29]  *** Error codes and diagnostics ***
[2024-05-17 19:59:29]     "exeErrorCode": 0,
[2024-05-17 19:59:29]     "exeErrorDiag": "",
[2024-05-17 19:59:29]     "pilotErrorCode": 0,
[2024-05-17 19:59:29]     "pilotErrorDiag": "",
[2024-05-17 19:59:29]  *** Listing of results directory ***
[2024-05-17 19:59:29] total 970552
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas    467845 May 16 13:11 pilot3.tar.gz
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas      5633 May 16 13:17 queuedata.json
[2024-05-17 19:59:29] -rwx------ 1 boincer umatlas     32251 May 16 13:18 runpilot2-wrapper.sh
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas       100 May 17 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 19:59:29] -rwxr-xr-x 1 boincer umatlas      7986 May 17 10:33 run_atlas
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas       105 May 17 10:33 job.xml
[2024-05-17 19:59:29] -rw-r--r-- 2 boincer umatlas 631433235 May 17 10:33 EVNT.38776180._000168.pool.root.1
[2024-05-17 19:59:29] drwxrwx--x 2 boincer umatlas      4096 May 17 10:33 shared
[2024-05-17 19:59:29] -rw-r--r-- 2 boincer umatlas    479999 May 17 10:33 input.tar.gz
[2024-05-17 19:59:29] -rw-r--r-- 2 boincer umatlas     17537 May 17 10:33 start_atlas.sh
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas         0 May 17 10:33 boinc_lockfile
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas      2612 May 17 10:33 pandaJob.out
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas       424 May 17 10:33 setup.sh.local
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas   1019402 May 17 10:34 agis_schedconf.cvmfs.json
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas   1324701 May 17 10:34 cric_ddmendpoints.json
[2024-05-17 19:59:29] drwx------ 4 boincer umatlas      4096 May 17 10:34 pilot3
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas      6303 May 17 19:54 init_data.xml
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas 349597831 May 17 19:56 HITS.38920995._004272.pool.root.1
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas       533 May 17 19:57 boinc_task_state.xml
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas      1090 May 17 19:58 memory_monitor_summary.json
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas         0 May 17 19:58 agis_ddmendpoints.agis.ALL.json
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas    640698 May 17 19:58 log.38920995._004272.job.log.tgz.1
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas        95 May 17 19:59 pilot_heartbeat.json
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas      7764 May 17 19:59 heartbeat.json
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas        29 May 17 19:59 wrapper_checkpoint.txt
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas      8192 May 17 19:59 boinc_mmap_file
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas      4520 May 17 19:59 pilotlog.txt
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas   3996163 May 17 19:59 log.38920995._004272.job.log.1
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas       357 May 17 19:59 output.list
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas       620 May 17 19:59 runtime_log
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas   4659200 May 17 19:59 result.tar.gz
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas     10995 May 17 19:59 runtime_log.err
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas       653 May 17 19:59 gBQMDmTvtR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmHsPKDmHA2ZXm.diag
[2024-05-17 19:59:29] -rw-r--r-- 1 boincer umatlas     21688 May 17 19:59 stderr.txt
[2024-05-17 19:59:29] HITS file was successfully produced:
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas 349597831 May 17 19:56 shared/HITS.pool.root.1
[2024-05-17 19:59:29]  *** Contents of shared directory: ***
[2024-05-17 19:59:29] total 963096
[2024-05-17 19:59:29] -rw-r--r-- 2 boincer umatlas 631433235 May 17 10:33 ATLAS.root_0
[2024-05-17 19:59:29] -rw-r--r-- 2 boincer umatlas    479999 May 17 10:33 input.tar.gz
[2024-05-17 19:59:29] -rw-r--r-- 2 boincer umatlas     17537 May 17 10:33 start_atlas.sh
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas 349597831 May 17 19:56 HITS.pool.root.1
[2024-05-17 19:59:29] -rw------- 1 boincer umatlas   4659200 May 17 19:59 result.tar.gz
19:59:30 (58795): run_atlas exited; CPU time 99342.307897
19:59:30 (58795): called boinc_finish(0)

</stderr_txt>
]]>

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