Stderr output

<core_client_version>7.16.16</core_client_version>
<![CDATA[
<stderr_txt>
02:59:19 (2216636): wrapper (7.7.26015): starting
02:59:19 (2216636): wrapper: running run_atlas (--nthreads 12)
[2024-05-17 02:59:19] Arguments: --nthreads 12
[2024-05-17 02:59:19] Threads: 12
[2024-05-17 02:59:19] Checking for CVMFS
[2024-05-17 02:59:19] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-17 02:59:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-17 02:59:19] Running cvmfs_config stat atlas.cern.ch
[2024-05-17 02:59:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-17 02:59:20] 2.11.2.0 954280 30631 233260 132818 2 236 3308660 4096000 5972 130560 156 52011801 99.810 12357696 414 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.168.20.99:8080 1
[2024-05-17 02:59:20] CVMFS is ok
[2024-05-17 02:59:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-17 02:59:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-17 02:59:20] Further information can be found at the LHC@home message board.
[2024-05-17 02:59:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-17 02:59:20] Checking for apptainer binary...
[2024-05-17 02:59:20] apptainer is not installed, using version from CVMFS
[2024-05-17 02:59:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-17 02:59:20] reimu
[2024-05-17 02:59:20] apptainer works
[2024-05-17 02:59:20] Set ATHENA_PROC_NUMBER=12
[2024-05-17 02:59:20] Set ATHENA_CORE_NUMBER=12
[2024-05-17 02:59:20] Starting ATLAS job with PandaID=6207470418
[2024-05-17 02:59:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/46 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-17 03:50:33]  *** The last 200 lines of the pilot log: ***
[2024-05-17 03:50:33] During handling of the above exception, another exception occurred:
[2024-05-17 03:50:33] 
[2024-05-17 03:50:33] Traceback (most recent call last):
[2024-05-17 03:50:33]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/logging/__init__.py", line 1083, in emit
[2024-05-17 03:50:33]     msg = self.format(record)
[2024-05-17 03:50:33]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/logging/__init__.py", line 927, in format
[2024-05-17 03:50:33]     return fmt.format(record)
[2024-05-17 03:50:33]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/logging/__init__.py", line 663, in format
[2024-05-17 03:50:33]     record.message = record.getMessage()
[2024-05-17 03:50:33]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/logging/__init__.py", line 367, in getMessage
[2024-05-17 03:50:33]     msg = msg % self.args
[2024-05-17 03:50:33] TypeError: not all arguments converted during string formatting
[2024-05-17 03:50:33] Call stack:
[2024-05-17 03:50:33]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/threading.py", line 937, in _bootstrap
[2024-05-17 03:50:33]     self._bootstrap_inner()
[2024-05-17 03:50:33]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/threading.py", line 980, in _bootstrap_inner
[2024-05-17 03:50:33]     self.run()
[2024-05-17 03:50:33]   File "/var/lib/boinc-client/slots/46/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-17 03:50:33]     self.target(**self.kwargs)
[2024-05-17 03:50:33]   File "/var/lib/boinc-client/slots/46/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-17 03:50:33]     update_server(job, args)
[2024-05-17 03:50:33]   File "/var/lib/boinc-client/slots/46/pilot3/pilot/control/job.py", line 2611, in update_server
[2024-05-17 03:50:33]     user.update_server(job)
[2024-05-17 03:50:33]   File "/var/lib/boinc-client/slots/46/pilot3/pilot/user/atlas/common.py", line 2692, in update_server
[2024-05-17 03:50:33]     status = upload_file(url, new_path)
[2024-05-17 03:50:33]   File "/var/lib/boinc-client/slots/46/pilot3/pilot/util/https.py", line 837, in upload_file
[2024-05-17 03:50:33]     logger.warning("URL Error:", e)
[2024-05-17 03:50:33] Message: 'URL Error:'
[2024-05-17 03:50:33] Arguments: (URLError(gaierror(-2, 'Name or service not known')),)
[2024-05-17 03:50:33] 2024-05-17 00:50:16,764 | WARNING  | failed to send data to https://pilot.atlas-ml.org: response=<urlopen error [Errno -2] Name or service not known>
[2024-05-17 03:50:33] 2024-05-17 00:50:16,764 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /var/lib/boinc-client/slots/46/PanDA_Pilot-62
[2024-05-17 03:50:33] 2024-05-17 00:50:16,788 | INFO     | sent prmon JSON dictionary to logstash server (curl method)
[2024-05-17 03:50:33] 2024-05-17 00:50:16,789 | INFO     | this job has now completed (state=finished)
[2024-05-17 03:50:33] 2024-05-17 00:50:16,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-17 03:50:33] 2024-05-17 00:50:16,789 | INFO     | job 6207470418 has finished - writing final server update
[2024-05-17 03:50:33] 2024-05-17 00:50:16,789 | INFO     | total number of processed events: 400 (read)
[2024-05-17 03:50:33] 2024-05-17 00:50:16,792 | INFO     | executing command: lscpu
[2024-05-17 03:50:33] 2024-05-17 00:50:16,836 | INFO     | found 32 cores (32 cores per socket, 1 sockets)
[2024-05-17 03:50:33] 2024-05-17 00:50:16,836 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-17 03:50:33] 2024-05-17 00:50:16,862 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-17 03:50:33] 2024-05-17 00:50:18,812 | INFO     | monitor loop #240: job 0:6207470418 is in state 'finished'
[2024-05-17 03:50:33] 2024-05-17 00:50:18,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-17 03:50:33] 2024-05-17 00:50:19,520 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-17 03:50:33] 2024-05-17 00:50:19,521 | INFO     | using path: /var/lib/boinc-client/slots/46/PanDA_Pilot-6207470418/memory_monitor_summary.json (trf name=prmon)
[2024-05-17 03:50:33] 2024-05-17 00:50:19,521 | INFO     | extracted standard info from prmon json
[2024-05-17 03:50:33] 2024-05-17 00:50:19,521 | INFO     | extracted standard memory fields from prmon json
[2024-05-17 03:50:33] 2024-05-17 00:50:19,521 | WARNING  | GPU info not found in prmon json
[2024-05-17 03:50:33] 2024-05-17 00:50:19,521 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-17 03:50:33] 2024-05-17 00:50:19,521 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | fitting pss+swap vs Time
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | model: linear, x: [1715904298.0, 1715904359.0, 1715904420.0, 1715904481.0, 1715904542.0, 1715904603.0, 1715904664.0, 1715904725.0, 1715904786.0, 1715904847.0, 1715
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | sum of square deviations: 24640462.0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | sum of deviations: 1230428682.0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | mean x: 1715905579.0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | mean y: 2728271.2558139535
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | -- intersect: -85681519045.43074
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | intersect: -85681519045.43074
[2024-05-17 03:50:33] 2024-05-17 00:50:19,522 | INFO     | chi2: 0.07532213407360229
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | -- intersect: -85681519045.43074
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | current memory leak: 49.94 B/s (using 43 data points, chi2=0.08)
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | ..............................
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . Timing measurements:
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . get job = 0 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . initial setup = 1 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . payload setup = 4 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . stage-in = 0 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . payload execution = 3023 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . stage-out = 0 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | . log creation = 0 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,523 | INFO     | ..............................
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | 
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | job summary report
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | --------------------------------------------------
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | PanDA job id: 6207470418
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | task id: 38776104
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | errors: (none)
[2024-05-17 03:50:33] 2024-05-17 00:50:19,560 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | pilot state: finished 
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | transexitcode: 0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | exeerrorcode: 0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | exeerrordiag: 
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | exitcode: 0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | exitmsg: OK
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | cpuconsumptiontime: 30391 s
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | nevents: 400
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | neventsw: 0
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | pid: 2228193
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | pgrp: 2228193
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | corecount: 12
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | event service: False
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | sizes: {0: 2392165, 3: 2392371, 11: 2392399, 3031: 2417739, 3033: 2426771, 3036: 2426885}
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | --------------------------------------------------
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | 
[2024-05-17 03:50:33] 2024-05-17 00:50:19,561 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/46
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | job 6207470418 has completed (purged errors)
[2024-05-17 03:50:33] 2024-05-17 00:50:19,578 | INFO     | overall cleanup function is called
[2024-05-17 03:50:33] 2024-05-17 00:50:20,586 | INFO     | --- collectZombieJob: --- 10, [2228193]
[2024-05-17 03:50:33] 2024-05-17 00:50:20,586 | INFO     | zombie collector waiting for pid 2228193
[2024-05-17 03:50:33] 2024-05-17 00:50:20,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-17 03:50:33] 2024-05-17 00:50:21,592 | INFO     | collected zombie processes
[2024-05-17 03:50:33] 2024-05-17 00:50:21,592 | INFO     | will now attempt to kill all subprocesses of pid=2228193
[2024-05-17 03:50:33] 2024-05-17 00:50:21,666 | INFO     | process IDs to be killed: [2228193] (in reverse order)
[2024-05-17 03:50:33] 2024-05-17 00:50:21,726 | WARNING  | found no corresponding commands to process id(s)
[2024-05-17 03:50:33] 2024-05-17 00:50:21,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-17 03:50:33] 2024-05-17 00:50:21,732 | INFO     | did not find any defunct processes belonging to 2228193
[2024-05-17 03:50:33] 2024-05-17 00:50:21,736 | INFO     | did not find any defunct processes belonging to 2228193
[2024-05-17 03:50:33] 2024-05-17 00:50:21,736 | INFO     | ready for new job
[2024-05-17 03:50:33] 2024-05-17 00:50:21,736 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-17 03:50:33] 2024-05-17 00:50:21,737 | INFO     | *************************************
[2024-05-17 03:50:33] 2024-05-17 00:50:21,737 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-17 03:50:33] 2024-05-17 00:50:21,737 | INFO     | *************************************
[2024-05-17 03:50:33] 2024-05-17 00:50:21,737 | INFO     | 
[2024-05-17 03:50:33] 2024-05-17 00:50:21,739 | INFO     | architecture information:
[2024-05-17 03:50:33] 2024-05-17 00:50:21,739 | INFO     | executing command: cat /etc/os-release
[2024-05-17 03:50:33] 2024-05-17 00:50:21,750 | INFO     | cat /etc/os-release:
[2024-05-17 03:50:33] NAME="CentOS Linux"
[2024-05-17 03:50:33] VERSION="7 (Core)"
[2024-05-17 03:50:33] ID="centos"
[2024-05-17 03:50:33] ID_LIKE="rhel fedora"
[2024-05-17 03:50:33] VERSION_ID="7"
[2024-05-17 03:50:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-17 03:50:33] ANSI_COLOR="0;31"
[2024-05-17 03:50:33] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-17 03:50:33] HOME_URL="https://www.centos.org/"
[2024-05-17 03:50:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-17 03:50:33] 
[2024-05-17 03:50:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-17 03:50:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-17 03:50:33] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-17 03:50:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-17 03:50:33] 
[2024-05-17 03:50:33] 2024-05-17 00:50:21,751 | INFO     | *************************************
[2024-05-17 03:50:33] 2024-05-17 00:50:22,253 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/46
[2024-05-17 03:50:33] 2024-05-17 00:50:22,264 | INFO     | sufficient remaining disk space (2708761214976 B)
[2024-05-17 03:50:33] 2024-05-17 00:50:22,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-17 03:50:33] 2024-05-17 00:50:22,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-17 03:50:33] 2024-05-17 00:50:22,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-17 03:50:33] 2024-05-17 00:50:22,293 | INFO     | all job control threads have been joined
[2024-05-17 03:50:33] 2024-05-17 00:50:22,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-17 03:50:33] 2024-05-17 00:50:22,321 | INFO     | aborting loop
[2024-05-17 03:50:33] 2024-05-17 00:50:22,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-17 03:50:33] 2024-05-17 00:50:22,681 | INFO     | all payload control threads have been joined
[2024-05-17 03:50:33] 2024-05-17 00:50:22,936 | INFO     | all data control threads have been joined
[2024-05-17 03:50:33] 2024-05-17 00:50:22,971 | INFO     | found 0 job(s) in 20 queues
[2024-05-17 03:50:33] 2024-05-17 00:50:22,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-17 03:50:33] 2024-05-17 00:50:22,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-17 03:50:33] 2024-05-17 00:50:23,269 | INFO     | [job] retrieve thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,297 | INFO     | [job] control thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,326 | INFO     | [job] job monitor thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,520 | INFO     | [payload] validate_post thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,593 | INFO     | [job] validate thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,685 | INFO     | [payload] control thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,809 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,908 | INFO     | [payload] failed_post thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,937 | INFO     | [payload] validate_pre thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:23,941 | INFO     | [data] control thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:24,013 | INFO     | [job] create_data_payload thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:24,269 | INFO     | [data] copytool_out thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:24,325 | INFO     | [data] copytool_in thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:24,477 | INFO     | [payload] execute_payloads thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:24,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-17 03:50:33] 2024-05-17 00:50:25,573 | INFO     | [job] queue monitor thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:26,397 | INFO     | [data] queue_monitor thread has finished
[2024-05-17 03:50:33] 2024-05-17 00:50:28,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645351630656)>', '<ExcThread(monitor, started 139644796651264)>']
[2024-05-17 03:50:33] 2024-05-17 00:50:28,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-17 03:50:33] 2024-05-17 00:50:28,997 | INFO     | [monitor] control thread has ended
[2024-05-17 03:50:33] 2024-05-17 00:50:33,293 | INFO     | all workflow threads have been joined
[2024-05-17 03:50:33] 2024-05-17 00:50:33,293 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-17 03:50:33] 2024-05-17 00:50:33,293 | INFO     | traces error code: 0
[2024-05-17 03:50:33] 2024-05-17 00:50:33,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-17 03:50:33] 2024-05-17 00:50:33,338 [wrapper] ==== pilot stdout END ====
[2024-05-17 03:50:33] 2024-05-17 00:50:33,340 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-17 03:50:33] 2024-05-17 00:50:33,341 [wrapper] pilotpid: 2221263
[2024-05-17 03:50:33] 2024-05-17 00:50:33,343 [wrapper] Pilot exit status: 0
[2024-05-17 03:50:33] 2024-05-17 00:50:33,349 [wrapper] pandaids: 6207470418
[2024-05-17 03:50:33] 2024-05-17 00:50:33,384 [wrapper] cleanup: SIGTERM to supervisor_pilot 2270558 2221264
[2024-05-17 03:50:33] 2024-05-17 00:50:33,385 [wrapper] Test setup, not cleaning
[2024-05-17 03:50:33] 2024-05-17 00:50:33,387 [wrapper] ==== wrapper stdout END ====
[2024-05-17 03:50:33] 2024-05-17 00:50:33,389 [wrapper] ==== wrapper stderr END ====
[2024-05-17 03:50:33] 2024-05-17 00:50:33,392 [wrapper] apfmon messages muted
[2024-05-17 03:50:33]  *** Error codes and diagnostics ***
[2024-05-17 03:50:33]     "exeErrorCode": 0,
[2024-05-17 03:50:33]     "exeErrorDiag": "",
[2024-05-17 03:50:33]     "pilotErrorCode": 0,
[2024-05-17 03:50:33]     "pilotErrorDiag": "",
[2024-05-17 03:50:33]  *** Listing of results directory ***
[2024-05-17 03:50:33] total 820752
[2024-05-17 03:50:33] -rwx------ 1 boinc boinc     32251 May 16 19:53 runpilot2-wrapper.sh
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc      5633 May 16 19:53 queuedata.json
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc    467845 May 16 19:53 pilot3.tar.gz
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc       100 May 17 02:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-17 03:50:33] -rwxr-xr-x 1 boinc boinc      7986 May 17 02:59 run_atlas
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc       105 May 17 02:59 job.xml
[2024-05-17 03:50:33] -rw-r--r-- 2 boinc boinc     17537 May 17 02:59 start_atlas.sh
[2024-05-17 03:50:33] drwxrwx--x 2 boinc boinc      4096 May 17 02:59 shared
[2024-05-17 03:50:33] -rw-r--r-- 2 boinc boinc    479997 May 17 02:59 input.tar.gz
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc      9355 May 17 02:59 init_data.xml
[2024-05-17 03:50:33] -rw-r--r-- 2 boinc boinc 602315982 May 17 02:59 EVNT.38776100._000409.pool.root.1
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc         0 May 17 02:59 boinc_lockfile
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc      2644 May 17 02:59 pandaJob.out
[2024-05-17 03:50:33] -rw------- 1 boinc boinc       468 May 17 02:59 setup.sh.local
[2024-05-17 03:50:33] -rw------- 1 boinc boinc   1019318 May 17 02:59 agis_schedconf.cvmfs.json
[2024-05-17 03:50:33] -rw------- 1 boinc boinc         0 May 17 02:59 agis_ddmendpoints.agis.ALL.json
[2024-05-17 03:50:33] -rw------- 1 boinc boinc   1324701 May 17 02:59 cric_ddmendpoints.json
[2024-05-17 03:50:33] drwx------ 4 boinc boinc      4096 May 17 02:59 pilot3
[2024-05-17 03:50:33] -rw------- 1 boinc boinc        95 May 17 03:49 pilot_heartbeat.json
[2024-05-17 03:50:33] -rw------- 1 boinc boinc 233236470 May 17 03:49 HITS.38776104._010790.pool.root.1
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc       530 May 17 03:49 boinc_task_state.xml
[2024-05-17 03:50:33] -rw------- 1 boinc boinc      1012 May 17 03:50 memory_monitor_summary.json
[2024-05-17 03:50:33] -rw------- 1 boinc boinc    340729 May 17 03:50 log.38776104._010790.job.log.tgz.1
[2024-05-17 03:50:33] -rw------- 1 boinc boinc      7638 May 17 03:50 heartbeat.json
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc      8192 May 17 03:50 boinc_mmap_file
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc        27 May 17 03:50 wrapper_checkpoint.txt
[2024-05-17 03:50:33] -rw------- 1 boinc boinc      4221 May 17 03:50 pilotlog.txt
[2024-05-17 03:50:33] -rw------- 1 boinc boinc    341680 May 17 03:50 log.38776104._010790.job.log.1
[2024-05-17 03:50:33] -rw------- 1 boinc boinc       357 May 17 03:50 output.list
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc       620 May 17 03:50 runtime_log
[2024-05-17 03:50:33] -rw------- 1 boinc boinc    696320 May 17 03:50 result.tar.gz
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc     11532 May 17 03:50 runtime_log.err
[2024-05-17 03:50:33] -rw------- 1 boinc boinc       629 May 17 03:50 5AYMDmVXtR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmWTKKDmcOOAUm.diag
[2024-05-17 03:50:33] -rw-r--r-- 1 boinc boinc     21456 May 17 03:50 stderr.txt
[2024-05-17 03:50:33] HITS file was successfully produced:
[2024-05-17 03:50:33] -rw------- 1 boinc boinc 233236470 May 17 03:49 shared/HITS.pool.root.1
[2024-05-17 03:50:33]  *** Contents of shared directory: ***
[2024-05-17 03:50:33] total 817152
[2024-05-17 03:50:33] -rw-r--r-- 2 boinc boinc     17537 May 17 02:59 start_atlas.sh
[2024-05-17 03:50:33] -rw-r--r-- 2 boinc boinc    479997 May 17 02:59 input.tar.gz
[2024-05-17 03:50:33] -rw-r--r-- 2 boinc boinc 602315982 May 17 02:59 ATLAS.root_0
[2024-05-17 03:50:33] -rw------- 1 boinc boinc 233236470 May 17 03:49 HITS.pool.root.1
[2024-05-17 03:50:33] -rw------- 1 boinc boinc    696320 May 17 03:50 result.tar.gz
03:50:35 (2216636): run_atlas exited; CPU time 30355.958515
03:50:35 (2216636): called boinc_finish(0)

</stderr_txt>
]]>

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