Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
07:19:15 (549548): wrapper (7.7.26015): starting
07:19:15 (549548): wrapper: running run_atlas (--nthreads 6)
[2024-05-19 07:19:15] Arguments: --nthreads 6
[2024-05-19 07:19:15] Threads: 6
[2024-05-19 07:19:15] Checking for CVMFS
[2024-05-19 07:19:16] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-19 07:19:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-19 07:19:16] Running cvmfs_config stat atlas.cern.ch
[2024-05-19 07:19:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-19 07:19:16] 2.11.2.0 9699 1222 66312 132901 3 189 3994925 6144000 911 130560 0 2241371 99.9957 177123 2193 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.202:3128 1
[2024-05-19 07:19:16] CVMFS is ok
[2024-05-19 07:19:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 07:19:16] Checking for apptainer binary...
[2024-05-19 07:19:16] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-19 07:19:16] Running /usr/bin/apptainer --version
[2024-05-19 07:19:16] apptainer version 1.3.0
[2024-05-19 07:19:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 07:19:16] Ryzen5
[2024-05-19 07:19:16] apptainer works
[2024-05-19 07:19:16] Set ATHENA_PROC_NUMBER=6
[2024-05-19 07:19:16] Set ATHENA_CORE_NUMBER=6
[2024-05-19 07:19:16] Starting ATLAS job with PandaID=6207470406
[2024-05-19 07:19:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 08:48:55]  *** The last 200 lines of the pilot log: ***
[2024-05-19 08:48:55]  filetype=log
[2024-05-19 08:48:55]  guid=b2db68c8-3c53-44c8-b865-36cc8205a70a
[2024-05-19 08:48:55]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-19 08:48:55]  is_tar=False
[2024-05-19 08:48:55]  lfn=log.38776104._010779.job.log.tgz.1
[2024-05-19 08:48:55]  mtime=0
[2024-05-19 08:48:55]  protocol_id=None
[2024-05-19 08:48:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-19 08:48:55]  replicas=None
[2024-05-19 08:48:55]  scope=mc23_13p6TeV
[2024-05-19 08:48:55]  status=None
[2024-05-19 08:48:55]  status_code=0
[2024-05-19 08:48:55]  storage_token=
[2024-05-19 08:48:55]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6207470406/log.38776104._010779.job.log.tgz.1
[2024-05-19 08:48:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/8c/log.38776104._010779.job.log.tgz.1
[2024-05-19 08:48:55]  workdir=None
[2024-05-19 08:48:55] ]
[2024-05-19 08:48:55] 2024-05-19 06:48:25,716 | INFO     | transferring file log.38776104._010779.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6207470406/log.38776104._010779.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-05-19 08:48:55] 2024-05-19 06:48:25,716 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6207470406/log.38776104._010779.job.log.tgz.1 /var/lib/boinc/slots/0/log.38776104._010779.job
[2024-05-19 08:48:55] 2024-05-19 06:48:25,731 | INFO     | adding to output.list: log.38776104._010779.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/8c/log.38776104._010779.job.log.tg
[2024-05-19 08:48:55] 2024-05-19 06:48:25,732 | INFO     | summary of transferred files:
[2024-05-19 08:48:55] 2024-05-19 06:48:25,732 | INFO     |  -- lfn=log.38776104._010779.job.log.tgz.1, status_code=0, status=transferred
[2024-05-19 08:48:55] 2024-05-19 06:48:25,732 | INFO     | stage-out finished correctly
[2024-05-19 08:48:55] 2024-05-19 06:48:29,170 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-19 08:48:55] 2024-05-19 06:48:29,498 | WARNING  | process 560215 is no longer using CPU - aborting
[2024-05-19 08:48:55] 2024-05-19 06:48:29,498 | INFO     | will not send any job update
[2024-05-19 08:48:55] 2024-05-19 06:48:29,788 | INFO     | job 6207470406 has state=finished
[2024-05-19 08:48:55] 2024-05-19 06:48:29,789 | INFO     | preparing for final server update for job 6207470406 in state='finished'
[2024-05-19 08:48:55] 2024-05-19 06:48:29,789 | INFO     | this job has now completed (state=finished)
[2024-05-19 08:48:55] 2024-05-19 06:48:29,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-19 08:48:55] 2024-05-19 06:48:29,789 | INFO     | job 6207470406 has finished - writing final server update
[2024-05-19 08:48:55] 2024-05-19 06:48:29,789 | INFO     | total number of processed events: 400 (read)
[2024-05-19 08:48:55] 2024-05-19 06:48:29,790 | INFO     | executing command: lscpu
[2024-05-19 08:48:55] 2024-05-19 06:48:29,808 | INFO     | found 6 cores (6 cores per socket, 1 sockets)
[2024-05-19 08:48:55] 2024-05-19 06:48:29,808 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-19 08:48:55] 2024-05-19 06:48:29,831 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-19 08:48:55] 2024-05-19 06:48:32,000 | INFO     | monitor loop #422: job 0:6207470406 is in state 'finished'
[2024-05-19 08:48:55] 2024-05-19 06:48:32,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,503 | INFO     | monitor loop #423: job 0:6207470406 is in state 'finished'
[2024-05-19 08:48:55] 2024-05-19 06:48:34,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,570 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-19 08:48:55] 2024-05-19 06:48:34,571 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6207470406/memory_monitor_summary.json (trf name=prmon)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,571 | INFO     | extracted standard info from prmon json
[2024-05-19 08:48:55] 2024-05-19 06:48:34,571 | INFO     | extracted standard memory fields from prmon json
[2024-05-19 08:48:55] 2024-05-19 06:48:34,571 | WARNING  | GPU info not found in prmon json
[2024-05-19 08:48:55] 2024-05-19 06:48:34,572 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 08:48:55] 2024-05-19 06:48:34,572 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 08:48:55] 2024-05-19 06:48:34,573 | INFO     | fitting pss+swap vs Time
[2024-05-19 08:48:55] 2024-05-19 06:48:34,573 | INFO     | model: linear, x: [1716096288.0, 1716096349.0, 1716096410.0, 1716096471.0, 1716096532.0, 1716096593.0, 1716096654.0, 1716096715.0, 1716096776.0, 1716096837.0, 1716
[2024-05-19 08:48:55] 2024-05-19 06:48:34,573 | INFO     | sum of square deviations: 164765880.0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,573 | INFO     | sum of deviations: -1138291292.9999998
[2024-05-19 08:48:55] 2024-05-19 06:48:34,573 | INFO     | mean x: 1716098728.0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,573 | INFO     | mean y: 2511692.8024691357
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | -- intersect: 11858244445.30423
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | intersect: 11858244445.30423
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | chi2: 0.025058965530836308
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | -- intersect: 11858244445.30423
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | current memory leak: -6.91 B/s (using 81 data points, chi2=0.03)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | ..............................
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . Timing measurements:
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . get job = 0 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . initial setup = 0 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . payload setup = 3 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . stage-in = 0 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . payload execution = 5320 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . stage-out = 0 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | . log creation = 0 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,574 | INFO     | ..............................
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | 
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | job summary report
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | --------------------------------------------------
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | PanDA job id: 6207470406
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | task id: 38776104
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | errors: (none)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | pilot state: finished 
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | transexitcode: 0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | exeerrorcode: 0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | exeerrordiag: 
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | exitcode: 0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,637 | INFO     | exitmsg: OK
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | cpuconsumptiontime: 29728 s
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | nevents: 400
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | neventsw: 0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | pid: 560215
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | pgrp: 560215
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | corecount: 6
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | event service: False
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | sizes: {0: 2392036, 1: 2392235, 3: 2392441, 11: 2392469, 5327: 2418949, 5328: 2418948, 5329: 2428092, 5333: 2428148, 5338: 2428318}
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | --------------------------------------------------
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | 
[2024-05-19 08:48:55] 2024-05-19 06:48:34,638 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-05-19 08:48:55] 2024-05-19 06:48:34,653 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,653 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,653 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,654 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 08:48:55] 2024-05-19 06:48:34,655 | INFO     | job 6207470406 has completed (purged errors)
[2024-05-19 08:48:55] 2024-05-19 06:48:34,655 | INFO     | overall cleanup function is called
[2024-05-19 08:48:55] 2024-05-19 06:48:35,662 | INFO     | --- collectZombieJob: --- 10, [560215]
[2024-05-19 08:48:55] 2024-05-19 06:48:35,662 | INFO     | zombie collector waiting for pid 560215
[2024-05-19 08:48:55] 2024-05-19 06:48:35,662 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 08:48:55] 2024-05-19 06:48:36,667 | INFO     | collected zombie processes
[2024-05-19 08:48:55] 2024-05-19 06:48:36,667 | INFO     | will now attempt to kill all subprocesses of pid=560215
[2024-05-19 08:48:55] 2024-05-19 06:48:36,719 | INFO     | process IDs to be killed: [560215] (in reverse order)
[2024-05-19 08:48:55] 2024-05-19 06:48:36,753 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 08:48:55] 2024-05-19 06:48:36,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 08:48:55] 2024-05-19 06:48:36,755 | INFO     | did not find any defunct processes belonging to 560215
[2024-05-19 08:48:55] 2024-05-19 06:48:36,757 | INFO     | did not find any defunct processes belonging to 560215
[2024-05-19 08:48:55] 2024-05-19 06:48:36,757 | INFO     | ready for new job
[2024-05-19 08:48:55] 2024-05-19 06:48:36,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 08:48:55] 2024-05-19 06:48:36,758 | INFO     | *************************************
[2024-05-19 08:48:55] 2024-05-19 06:48:36,758 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 08:48:55] 2024-05-19 06:48:36,758 | INFO     | *************************************
[2024-05-19 08:48:55] 2024-05-19 06:48:36,758 | INFO     | 
[2024-05-19 08:48:55] 2024-05-19 06:48:36,759 | INFO     | architecture information:
[2024-05-19 08:48:55] 2024-05-19 06:48:36,759 | INFO     | executing command: cat /etc/os-release
[2024-05-19 08:48:55] 2024-05-19 06:48:36,770 | INFO     | cat /etc/os-release:
[2024-05-19 08:48:55] NAME="CentOS Linux"
[2024-05-19 08:48:55] VERSION="7 (Core)"
[2024-05-19 08:48:55] ID="centos"
[2024-05-19 08:48:55] ID_LIKE="rhel fedora"
[2024-05-19 08:48:55] VERSION_ID="7"
[2024-05-19 08:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 08:48:55] ANSI_COLOR="0;31"
[2024-05-19 08:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 08:48:55] HOME_URL="https://www.centos.org/"
[2024-05-19 08:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 08:48:55] 
[2024-05-19 08:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 08:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 08:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 08:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 08:48:55] 
[2024-05-19 08:48:55] 2024-05-19 06:48:36,771 | INFO     | *************************************
[2024-05-19 08:48:55] 2024-05-19 06:48:37,273 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-05-19 08:48:55] 2024-05-19 06:48:37,286 | INFO     | sufficient remaining disk space (391586512896 B)
[2024-05-19 08:48:55] 2024-05-19 06:48:37,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 08:48:55] 2024-05-19 06:48:37,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 08:48:55] 2024-05-19 06:48:37,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 08:48:55] 2024-05-19 06:48:37,287 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 08:48:55] 2024-05-19 06:48:37,287 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 08:48:55] 2024-05-19 06:48:37,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 08:48:55] 2024-05-19 06:48:37,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 08:48:55] 2024-05-19 06:48:37,495 | INFO     | all job control threads have been joined
[2024-05-19 08:48:55] 2024-05-19 06:48:37,848 | INFO     | all data control threads have been joined
[2024-05-19 08:48:55] 2024-05-19 06:48:38,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 08:48:55] 2024-05-19 06:48:38,012 | INFO     | aborting loop
[2024-05-19 08:48:55] 2024-05-19 06:48:38,270 | INFO     | all payload control threads have been joined
[2024-05-19 08:48:55] 2024-05-19 06:48:38,290 | INFO     | [job] retrieve thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:38,500 | INFO     | [job] control thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:38,850 | INFO     | [data] control thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,014 | INFO     | [job] job monitor thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,025 | INFO     | [payload] failed_post thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,276 | INFO     | [payload] control thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,292 | INFO     | [data] copytool_out thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,292 | INFO     | [data] copytool_in thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,347 | INFO     | [job] validate thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,514 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,564 | INFO     | [payload] validate_post thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 08:48:55] 2024-05-19 06:48:39,667 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,724 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:39,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 08:48:55] 2024-05-19 06:48:40,651 | INFO     | [job] queue monitor thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:43,738 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:48,300 | INFO     | job.realtimelogging is not enabled
[2024-05-19 08:48:55] 2024-05-19 06:48:49,306 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 08:48:55] 2024-05-19 06:48:50,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928418662208)>', '<ExcThread(monitor, started 139927803123456)>']
[2024-05-19 08:48:55] 2024-05-19 06:48:51,344 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 08:48:55] 2024-05-19 06:48:51,344 | INFO     | [monitor] control thread has ended
[2024-05-19 08:48:55] 2024-05-19 06:48:55,375 | INFO     | all workflow threads have been joined
[2024-05-19 08:48:55] 2024-05-19 06:48:55,375 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 08:48:55] 2024-05-19 06:48:55,375 | INFO     | traces error code: 0
[2024-05-19 08:48:55] 2024-05-19 06:48:55,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 08:48:55] 2024-05-19 06:48:55,427 [wrapper] ==== pilot stdout END ====
[2024-05-19 08:48:55] 2024-05-19 06:48:55,429 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 08:48:55] 2024-05-19 06:48:55,431 [wrapper] pilotpid: 553755
[2024-05-19 08:48:55] 2024-05-19 06:48:55,433 [wrapper] Pilot exit status: 0
[2024-05-19 08:48:55] 2024-05-19 06:48:55,440 [wrapper] pandaids: 6207470406
[2024-05-19 08:48:55] 2024-05-19 06:48:55,461 [wrapper] cleanup: SIGTERM to supervisor_pilot  579405 553756
[2024-05-19 08:48:55] 2024-05-19 06:48:55,463 [wrapper] Test setup, not cleaning
[2024-05-19 08:48:55] 2024-05-19 06:48:55,465 [wrapper] ==== wrapper stdout END ====
[2024-05-19 08:48:55] 2024-05-19 06:48:55,467 [wrapper] ==== wrapper stderr END ====
[2024-05-19 08:48:55] 2024-05-19 06:48:55,471 [wrapper] apfmon messages muted
[2024-05-19 08:48:55]  *** Error codes and diagnostics ***
[2024-05-19 08:48:55]     "exeErrorCode": 0,
[2024-05-19 08:48:55]     "exeErrorDiag": "",
[2024-05-19 08:48:55]     "pilotErrorCode": 0,
[2024-05-19 08:48:55]     "pilotErrorDiag": "",
[2024-05-19 08:48:55]  *** Listing of results directory ***
[2024-05-19 08:48:55] insgesamt 816024
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc    467845 16. Mai 18:36 pilot3.tar.gz
[2024-05-19 08:48:55] -rwx------ 1 boinc boinc     32251 16. Mai 18:49 runpilot2-wrapper.sh
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc      5633 16. Mai 18:49 queuedata.json
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc       100 19. Mai 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 08:48:55] -rwxr-xr-x 1 boinc boinc      7986 19. Mai 07:19 run_atlas
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc       105 19. Mai 07:19 job.xml
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc      6864 19. Mai 07:19 init_data.xml
[2024-05-19 08:48:55] -rw-r--r-- 2 boinc boinc 598046113 19. Mai 07:19 EVNT.38776100._000408.pool.root.1
[2024-05-19 08:48:55] drwxrwx--x 2 boinc boinc      4096 19. Mai 07:19 shared
[2024-05-19 08:48:55] -rw-r--r-- 2 boinc boinc    479998 19. Mai 07:19 input.tar.gz
[2024-05-19 08:48:55] -rw-r--r-- 2 boinc boinc     17537 19. Mai 07:19 start_atlas.sh
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc         0 19. Mai 07:19 boinc_lockfile
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc      2644 19. Mai 07:19 pandaJob.out
[2024-05-19 08:48:55] -rw------- 1 boinc boinc       462 19. Mai 07:19 setup.sh.local
[2024-05-19 08:48:55] -rw------- 1 boinc boinc   1013987 19. Mai 07:19 agis_schedconf.cvmfs.json
[2024-05-19 08:48:55] -rw------- 1 boinc boinc         0 19. Mai 07:19 agis_ddmendpoints.agis.ALL.json
[2024-05-19 08:48:55] -rw------- 1 boinc boinc   1324701 19. Mai 07:19 cric_ddmendpoints.json
[2024-05-19 08:48:55] drwx------ 4 boinc boinc      4096 19. Mai 07:19 pilot3
[2024-05-19 08:48:55] -rw------- 1 boinc boinc 232390028 19. Mai 08:47 HITS.38776104._010779.pool.root.1
[2024-05-19 08:48:55] -rw------- 1 boinc boinc      1014 19. Mai 08:48 memory_monitor_summary.json
[2024-05-19 08:48:55] -rw------- 1 boinc boinc    290821 19. Mai 08:48 log.38776104._010779.job.log.tgz.1
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc       530 19. Mai 08:48 boinc_task_state.xml
[2024-05-19 08:48:55] -rw------- 1 boinc boinc        95 19. Mai 08:48 pilot_heartbeat.json
[2024-05-19 08:48:55] -rw------- 1 boinc boinc      7633 19. Mai 08:48 heartbeat.json
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc      8192 19. Mai 08:48 boinc_mmap_file
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc        27 19. Mai 08:48 wrapper_checkpoint.txt
[2024-05-19 08:48:55] -rw------- 1 boinc boinc      4407 19. Mai 08:48 pilotlog.txt
[2024-05-19 08:48:55] -rw------- 1 boinc boinc    530354 19. Mai 08:48 log.38776104._010779.job.log.1
[2024-05-19 08:48:55] -rw------- 1 boinc boinc       357 19. Mai 08:48 output.list
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc       620 19. Mai 08:48 runtime_log
[2024-05-19 08:48:55] -rw------- 1 boinc boinc    839680 19. Mai 08:48 result.tar.gz
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc     11326 19. Mai 08:48 runtime_log.err
[2024-05-19 08:48:55] -rw------- 1 boinc boinc       630 19. Mai 08:48 doVMDmPTtR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmmqPKDmsWIgsm.diag
[2024-05-19 08:48:55] -rw-r--r-- 1 boinc boinc     21045 19. Mai 08:48 stderr.txt
[2024-05-19 08:48:55] HITS file was successfully produced:
[2024-05-19 08:48:55] -rw------- 1 boinc boinc 232390028 19. Mai 08:47 shared/HITS.pool.root.1
[2024-05-19 08:48:55]  *** Contents of shared directory: ***
[2024-05-19 08:48:55] insgesamt 812296
[2024-05-19 08:48:55] -rw-r--r-- 2 boinc boinc 598046113 19. Mai 07:19 ATLAS.root_0
[2024-05-19 08:48:55] -rw-r--r-- 2 boinc boinc    479998 19. Mai 07:19 input.tar.gz
[2024-05-19 08:48:55] -rw-r--r-- 2 boinc boinc     17537 19. Mai 07:19 start_atlas.sh
[2024-05-19 08:48:55] -rw------- 1 boinc boinc 232390028 19. Mai 08:47 HITS.pool.root.1
[2024-05-19 08:48:55] -rw------- 1 boinc boinc    839680 19. Mai 08:48 result.tar.gz
08:48:57 (549548): run_atlas exited; CPU time 29711.863384
08:48:57 (549548): called boinc_finish(0)

</stderr_txt>
]]>

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