Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:18:21 (3173797): wrapper (7.7.26015): starting
03:18:21 (3173797): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 03:18:21] Arguments: --nthreads 4
[2024-05-19 03:18:21] Threads: 4
[2024-05-19 03:18:21] Checking for CVMFS
[2024-05-19 03:18:21] No cvmfs_config command found, will try listing directly
[2024-05-19 03:18:21] CVMFS is ok
[2024-05-19 03:18:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 03:18:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 03:18:21] Further information can be found at the LHC@home message board.
[2024-05-19 03:18:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 03:18:21] Checking for apptainer binary...
[2024-05-19 03:18:21] which: no apptainer in ((null))
[2024-05-19 03:18:21] apptainer is not installed, using version from CVMFS
[2024-05-19 03:18:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 03:18:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-05-19 03:18:22] apptainer works
[2024-05-19 03:18:22] Set ATHENA_PROC_NUMBER=4
[2024-05-19 03:18:22] Set ATHENA_CORE_NUMBER=4
[2024-05-19 03:18:22] Starting ATLAS job with PandaID=6207355506
[2024-05-19 03:18:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 05:02:26]  *** The last 200 lines of the pilot log: ***
[2024-05-19 05:02:26] 2024-05-19 03:02:04,105 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-19 05:02:26] 2024-05-19 03:02:04,106 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-19 05:02:26] 2024-05-19 03:02:04,108 | INFO     | fitting pss+swap vs Time
[2024-05-19 05:02:26] 2024-05-19 03:02:04,108 | INFO     | model: linear, x: [1716081536.0, 1716081597.0, 1716081658.0, 1716081719.0, 1716081780.0, 1716081841.0, 1716081902.0, 1716081963.0, 1716082024.0, 1716082085.0, 1716
[2024-05-19 05:02:26] 2024-05-19 03:02:04,109 | INFO     | sum of square deviations: 329031285.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,109 | INFO     | sum of deviations: 29355095483.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,109 | INFO     | mean x: 1716084616.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,109 | INFO     | mean y: 2223558.8921568627
[2024-05-19 05:02:26] 2024-05-19 03:02:04,110 | INFO     | -- intersect: -153101234972.63092
[2024-05-19 05:02:26] 2024-05-19 03:02:04,110 | INFO     | intersect: -153101234972.63092
[2024-05-19 05:02:26] 2024-05-19 03:02:04,110 | INFO     | chi2: 4.76442066429934
[2024-05-19 05:02:26] 2024-05-19 03:02:04,110 | INFO     | model: linear, x: [1716081536.0, 1716081597.0, 1716081658.0, 1716081719.0, 1716081780.0, 1716081841.0, 1716081902.0, 1716081963.0, 1716082024.0, 1716082085.0, 1716
[2024-05-19 05:02:26] 2024-05-19 03:02:04,110 | INFO     | sum of square deviations: 282974608.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,111 | INFO     | sum of deviations: 34192022071.999996
[2024-05-19 05:02:26] 2024-05-19 03:02:04,111 | INFO     | mean x: 1716084464.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,111 | INFO     | mean y: 2238728.793814433
[2024-05-19 05:02:26] 2024-05-19 03:02:04,111 | INFO     | -- intersect: -207353461081.9266
[2024-05-19 05:02:26] 2024-05-19 03:02:04,111 | INFO     | intersect: -207353461081.9266
[2024-05-19 05:02:26] 2024-05-19 03:02:04,111 | INFO     | chi2: 3.960477264091322
[2024-05-19 05:02:26] 2024-05-19 03:02:04,112 | INFO     | current chi2=3.960477264091322 (change=16.87389625840788 %)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,112 | INFO     | right removable region: 96
[2024-05-19 05:02:26] 2024-05-19 03:02:04,112 | INFO     | model: linear, x: [1716081841.0, 1716081902.0, 1716081963.0, 1716082024.0, 1716082085.0, 1716082146.0, 1716082207.0, 1716082268.0, 1716082329.0, 1716082390.0, 1716
[2024-05-19 05:02:26] 2024-05-19 03:02:04,112 | INFO     | sum of square deviations: 282974608.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | sum of deviations: 7213659309.999999
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | mean x: 1716084769.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | mean y: 2296447.12371134
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | -- intersect: -43744564651.61504
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | intersect: -43744564651.61504
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | chi2: 2.3107842944461923
[2024-05-19 05:02:26] 2024-05-19 03:02:04,113 | INFO     | current chi2=2.3107842944461923 (change=51.499154729108746 %)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,114 | INFO     | model: linear, x: [1716082146.0, 1716082207.0, 1716082268.0, 1716082329.0, 1716082390.0, 1716082451.0, 1716082512.0, 1716082573.0, 1716082634.0, 1716082695.0, 1716
[2024-05-19 05:02:26] 2024-05-19 03:02:04,114 | INFO     | sum of square deviations: 241429643.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,114 | INFO     | sum of deviations: -10165451963.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,114 | INFO     | mean x: 1716084921.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,114 | INFO     | mean y: 2360284.097826087
[2024-05-19 05:02:26] 2024-05-19 03:02:04,114 | INFO     | -- intersect: 72258519958.71954
[2024-05-19 05:02:26] 2024-05-19 03:02:04,115 | INFO     | intersect: 72258519958.71954
[2024-05-19 05:02:26] 2024-05-19 03:02:04,115 | INFO     | chi2: 0.8845546816798194
[2024-05-19 05:02:26] 2024-05-19 03:02:04,115 | INFO     | current chi2=0.8845546816798194 (change=61.72058621803064 %)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,115 | INFO     | model: linear, x: [1716082451.0, 1716082512.0, 1716082573.0, 1716082634.0, 1716082695.0, 1716082756.0, 1716082817.0, 1716082878.0, 1716082939.0, 1716083000.0, 1716
[2024-05-19 05:02:26] 2024-05-19 03:02:04,115 | INFO     | sum of square deviations: 204163828.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | sum of deviations: -10856589558.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | mean x: 1716085074.0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | mean y: 2362850.643678161
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | -- intersect: 91256682861.86554
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | intersect: 91256682861.86554
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | chi2: 0.8487353946436961
[2024-05-19 05:02:26] 2024-05-19 03:02:04,116 | INFO     | current chi2=0.8487353946436961 (change=4.049414669096602 %)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | left removable region: 30
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | model: linear, x: [1716083366.0, 1716083427.0, 1716083488.0, 1716083549.0, 1716083610.0, 1716083671.0, 1716083732.0, 1716083793.0, 1716083854.0, 1716083915.0, 1716
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | sum of square deviations: 89127252.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | sum of deviations: -2341992245.4999995
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | mean x: 1716085348.5
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | mean y: 2375168.1666666665
[2024-05-19 05:02:26] 2024-05-19 03:02:04,117 | INFO     | -- intersect: 45095861908.41106
[2024-05-19 05:02:26] 2024-05-19 03:02:04,118 | INFO     | intersect: 45095861908.41106
[2024-05-19 05:02:26] 2024-05-19 03:02:04,118 | INFO     | chi2: 0.005884241702021022
[2024-05-19 05:02:26] 2024-05-19 03:02:04,118 | INFO     | -- intersect: 45095861908.41106
[2024-05-19 05:02:26] 2024-05-19 03:02:04,118 | INFO     | current memory leak: -26.28 B/s (using 66 data points, chi2=0.01)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,118 | INFO     | ..............................
[2024-05-19 05:02:26] 2024-05-19 03:02:04,118 | INFO     | . Timing measurements:
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . get job = 0 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . initial setup = 1 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . payload setup = 5 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . stage-in = 0 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . payload execution = 6180 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . stage-out = 0 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | . log creation = 0 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,119 | INFO     | ..............................
[2024-05-19 05:02:26] 2024-05-19 03:02:04,287 | INFO     | 
[2024-05-19 05:02:26] 2024-05-19 03:02:04,287 | INFO     | job summary report
[2024-05-19 05:02:26] 2024-05-19 03:02:04,287 | INFO     | --------------------------------------------------
[2024-05-19 05:02:26] 2024-05-19 03:02:04,287 | INFO     | PanDA job id: 6207355506
[2024-05-19 05:02:26] 2024-05-19 03:02:04,287 | INFO     | task id: 38776104
[2024-05-19 05:02:26] 2024-05-19 03:02:04,287 | INFO     | errors: (none)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | pilot state: finished 
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | transexitcode: 0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | exeerrorcode: 0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | exeerrordiag: 
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | exitcode: 0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | exitmsg: OK
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | cpuconsumptiontime: 22144 s
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | nevents: 400
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | neventsw: 0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | pid: 3186632
[2024-05-19 05:02:26] 2024-05-19 03:02:04,288 | INFO     | pgrp: 3186632
[2024-05-19 05:02:26] 2024-05-19 03:02:04,289 | INFO     | corecount: 4
[2024-05-19 05:02:26] 2024-05-19 03:02:04,289 | INFO     | event service: False
[2024-05-19 05:02:26] 2024-05-19 03:02:04,289 | INFO     | sizes: {0: 2390742, 1: 2392290, 5: 2392496, 12: 2392552, 6190: 2419509, 6192: 2428493, 6193: 2428677, 6198: 2428847}
[2024-05-19 05:02:26] 2024-05-19 03:02:04,289 | INFO     | --------------------------------------------------
[2024-05-19 05:02:26] 2024-05-19 03:02:04,289 | INFO     | 
[2024-05-19 05:02:26] 2024-05-19 03:02:04,289 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2024-05-19 05:02:26] 2024-05-19 03:02:04,311 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,313 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,314 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,314 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 05:02:26] 2024-05-19 03:02:04,314 | INFO     | job 6207355506 has completed (purged errors)
[2024-05-19 05:02:26] 2024-05-19 03:02:04,314 | INFO     | overall cleanup function is called
[2024-05-19 05:02:26] 2024-05-19 03:02:05,321 | INFO     | --- collectZombieJob: --- 10, [3186632]
[2024-05-19 05:02:26] 2024-05-19 03:02:05,322 | INFO     | zombie collector waiting for pid 3186632
[2024-05-19 05:02:26] 2024-05-19 03:02:05,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 05:02:26] 2024-05-19 03:02:06,327 | INFO     | collected zombie processes
[2024-05-19 05:02:26] 2024-05-19 03:02:06,327 | INFO     | will now attempt to kill all subprocesses of pid=3186632
[2024-05-19 05:02:26] 2024-05-19 03:02:06,487 | INFO     | process IDs to be killed: [3186632] (in reverse order)
[2024-05-19 05:02:26] 2024-05-19 03:02:06,652 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 05:02:26] 2024-05-19 03:02:06,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 05:02:26] 2024-05-19 03:02:06,663 | INFO     | did not find any defunct processes belonging to 3186632
[2024-05-19 05:02:26] 2024-05-19 03:02:06,670 | INFO     | did not find any defunct processes belonging to 3186632
[2024-05-19 05:02:26] 2024-05-19 03:02:06,670 | INFO     | ready for new job
[2024-05-19 05:02:26] 2024-05-19 03:02:06,670 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 05:02:26] 2024-05-19 03:02:06,671 | INFO     | *************************************
[2024-05-19 05:02:26] 2024-05-19 03:02:06,671 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 05:02:26] 2024-05-19 03:02:06,671 | INFO     | *************************************
[2024-05-19 05:02:26] 2024-05-19 03:02:06,671 | INFO     | 
[2024-05-19 05:02:26] 2024-05-19 03:02:06,675 | INFO     | architecture information:
[2024-05-19 05:02:26] 2024-05-19 03:02:06,675 | INFO     | executing command: cat /etc/os-release
[2024-05-19 05:02:26] 2024-05-19 03:02:06,689 | INFO     | cat /etc/os-release:
[2024-05-19 05:02:26] NAME="CentOS Linux"
[2024-05-19 05:02:26] VERSION="7 (Core)"
[2024-05-19 05:02:26] ID="centos"
[2024-05-19 05:02:26] ID_LIKE="rhel fedora"
[2024-05-19 05:02:26] VERSION_ID="7"
[2024-05-19 05:02:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 05:02:26] ANSI_COLOR="0;31"
[2024-05-19 05:02:26] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 05:02:26] HOME_URL="https://www.centos.org/"
[2024-05-19 05:02:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 05:02:26] 
[2024-05-19 05:02:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 05:02:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 05:02:26] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 05:02:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 05:02:26] 
[2024-05-19 05:02:26] 2024-05-19 03:02:06,689 | INFO     | *************************************
[2024-05-19 05:02:26] 2024-05-19 03:02:07,192 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2024-05-19 05:02:26] 2024-05-19 03:02:07,210 | INFO     | sufficient remaining disk space (2978179186688 B)
[2024-05-19 05:02:26] 2024-05-19 03:02:07,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 05:02:26] 2024-05-19 03:02:07,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 05:02:26] 2024-05-19 03:02:07,302 | INFO     | all payload control threads have been joined
[2024-05-19 05:02:26] 2024-05-19 03:02:07,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 05:02:26] 2024-05-19 03:02:07,511 | INFO     | aborting loop
[2024-05-19 05:02:26] 2024-05-19 03:02:07,636 | INFO     | all data control threads have been joined
[2024-05-19 05:02:26] 2024-05-19 03:02:08,049 | INFO     | all job control threads have been joined
[2024-05-19 05:02:26] 2024-05-19 03:02:08,206 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 05:02:26] 2024-05-19 03:02:08,206 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 05:02:26] 2024-05-19 03:02:08,206 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 05:02:26] 2024-05-19 03:02:08,216 | INFO     | [job] retrieve thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,240 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,288 | INFO     | [job] validate thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,290 | INFO     | [payload] failed_post thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,303 | INFO     | [payload] control thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,371 | INFO     | [data] copytool_in thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,516 | INFO     | [job] job monitor thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 05:02:26] 2024-05-19 03:02:08,642 | INFO     | [data] control thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,731 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:08,831 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:09,054 | INFO     | [job] control thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:09,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 05:02:26] 2024-05-19 03:02:09,725 | INFO     | [payload] validate_post thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:09,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 05:02:26] 2024-05-19 03:02:10,242 | INFO     | [job] queue monitor thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:10,616 | INFO     | [data] copytool_out thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:13,771 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:18,109 | INFO     | job.realtimelogging is not enabled
[2024-05-19 05:02:26] 2024-05-19 03:02:19,114 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 05:02:26] 2024-05-19 03:02:20,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47504727352384)>', '<ExcThread(monitor, started 47505049962240)>']
[2024-05-19 05:02:26] 2024-05-19 03:02:21,269 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 05:02:26] 2024-05-19 03:02:21,270 | INFO     | [monitor] control thread has ended
[2024-05-19 05:02:26] 2024-05-19 03:02:25,738 | INFO     | all workflow threads have been joined
[2024-05-19 05:02:26] 2024-05-19 03:02:25,738 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 05:02:26] 2024-05-19 03:02:25,738 | INFO     | traces error code: 0
[2024-05-19 05:02:26] 2024-05-19 03:02:25,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 05:02:26] 2024-05-19 03:02:25,813 [wrapper] ==== pilot stdout END ====
[2024-05-19 05:02:26] 2024-05-19 03:02:25,815 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 05:02:26] 2024-05-19 03:02:25,817 [wrapper] pilotpid: 3178888
[2024-05-19 05:02:26] 2024-05-19 03:02:25,820 [wrapper] Pilot exit status: 0
[2024-05-19 05:02:26] 2024-05-19 03:02:25,828 [wrapper] pandaids: 6207355506
[2024-05-19 05:02:26] 2024-05-19 03:02:25,956 [wrapper] cleanup: SIGTERM to supervisor_pilot 3541018 3178889
[2024-05-19 05:02:26] 2024-05-19 03:02:25,958 [wrapper] Test setup, not cleaning
[2024-05-19 05:02:26] 2024-05-19 03:02:25,961 [wrapper] ==== wrapper stdout END ====
[2024-05-19 05:02:26] 2024-05-19 03:02:25,963 [wrapper] ==== wrapper stderr END ====
[2024-05-19 05:02:26] 2024-05-19 03:02:25,967 [wrapper] apfmon messages muted
[2024-05-19 05:02:26]  *** Error codes and diagnostics ***
[2024-05-19 05:02:26]     "exeErrorCode": 0,
[2024-05-19 05:02:26]     "exeErrorDiag": "",
[2024-05-19 05:02:26]     "pilotErrorCode": 0,
[2024-05-19 05:02:26]     "pilotErrorDiag": "",
[2024-05-19 05:02:26]  *** Listing of results directory ***
[2024-05-19 05:02:26] total 819528
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc    467845 May 16 15:54 pilot3.tar.gz
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc      5633 May 16 15:58 queuedata.json
[2024-05-19 05:02:26] -rwx------ 1 boinc boinc     32251 May 16 16:00 runpilot2-wrapper.sh
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc       100 May 19 03:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 05:02:26] -rwxr-xr-x 1 boinc boinc      7986 May 19 03:18 run_atlas
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc       105 May 19 03:18 job.xml
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc      6646 May 19 03:18 init_data.xml
[2024-05-19 05:02:26] -rw-r--r-- 2 boinc boinc 601776077 May 19 03:18 EVNT.38776100._000042.pool.root.1
[2024-05-19 05:02:26] -rw-r--r-- 2 boinc boinc     17537 May 19 03:18 start_atlas.sh
[2024-05-19 05:02:26] drwxrwx--x 2 boinc boinc      4096 May 19 03:18 shared
[2024-05-19 05:02:26] -rw-r--r-- 2 boinc boinc    480006 May 19 03:18 input.tar.gz
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc         0 May 19 03:18 boinc_lockfile
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc      2640 May 19 03:18 pandaJob.out
[2024-05-19 05:02:26] -rw------- 1 boinc boinc       424 May 19 03:18 setup.sh.local
[2024-05-19 05:02:26] -rw------- 1 boinc boinc   1013712 May 19 03:18 agis_schedconf.cvmfs.json
[2024-05-19 05:02:26] -rw------- 1 boinc boinc         0 May 19 03:18 agis_ddmendpoints.agis.ALL.json
[2024-05-19 05:02:26] -rw------- 1 boinc boinc   1324701 May 19 03:18 cric_ddmendpoints.json
[2024-05-19 05:02:26] drwx------ 4 boinc boinc      4096 May 19 03:18 pilot3
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc       531 May 19 05:01 boinc_task_state.xml
[2024-05-19 05:02:26] -rw------- 1 boinc boinc 232105781 May 19 05:01 HITS.38776104._010026.pool.root.1
[2024-05-19 05:02:26] -rw------- 1 boinc boinc        95 May 19 05:01 pilot_heartbeat.json
[2024-05-19 05:02:26] -rw------- 1 boinc boinc      1039 May 19 05:01 memory_monitor_summary.json
[2024-05-19 05:02:26] -rw------- 1 boinc boinc    252078 May 19 05:01 log.38776104._010026.job.log.tgz.1
[2024-05-19 05:02:26] -rw------- 1 boinc boinc      7726 May 19 05:02 heartbeat.json
[2024-05-19 05:02:26] -rw------- 1 boinc boinc      4295 May 19 05:02 pilotlog.txt
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc        27 May 19 05:02 wrapper_checkpoint.txt
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc      8192 May 19 05:02 boinc_mmap_file
[2024-05-19 05:02:26] -rw------- 1 boinc boinc    641020 May 19 05:02 log.38776104._010026.job.log.1
[2024-05-19 05:02:26] -rw------- 1 boinc boinc       357 May 19 05:02 output.list
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc       620 May 19 05:02 runtime_log
[2024-05-19 05:02:26] -rw------- 1 boinc boinc    911360 May 19 05:02 result.tar.gz
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc     11428 May 19 05:02 runtime_log.err
[2024-05-19 05:02:26] -rw------- 1 boinc boinc       655 May 19 05:02 B02NDmqpqR5nsSi4apGgGQJmABFKDmABFKDm4ySLDm7bPKDmPHJO6m.diag
[2024-05-19 05:02:26] -rw-r--r-- 1 boinc boinc     21276 May 19 05:02 stderr.txt
[2024-05-19 05:02:26] HITS file was successfully produced:
[2024-05-19 05:02:26] -rw------- 1 boinc boinc 232105781 May 19 05:01 shared/HITS.pool.root.1
[2024-05-19 05:02:26]  *** Contents of shared directory: ***
[2024-05-19 05:02:26] total 815732
[2024-05-19 05:02:26] -rw-r--r-- 2 boinc boinc 601776077 May 19 03:18 ATLAS.root_0
[2024-05-19 05:02:26] -rw-r--r-- 2 boinc boinc     17537 May 19 03:18 start_atlas.sh
[2024-05-19 05:02:26] -rw-r--r-- 2 boinc boinc    480006 May 19 03:18 input.tar.gz
[2024-05-19 05:02:26] -rw------- 1 boinc boinc 232105781 May 19 05:01 HITS.pool.root.1
[2024-05-19 05:02:26] -rw------- 1 boinc boinc    911360 May 19 05:02 result.tar.gz
05:02:27 (3173797): run_atlas exited; CPU time 22012.550964
05:02:27 (3173797): called boinc_finish(0)

</stderr_txt>
]]>

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