Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:07:49 (2480261): wrapper (7.7.26015): starting
19:07:49 (2480261): wrapper: running run_atlas (--nthreads 4)
[2024-05-18 19:07:49] Arguments: --nthreads 4
[2024-05-18 19:07:49] Threads: 4
[2024-05-18 19:07:49] Checking for CVMFS
[2024-05-18 19:07:49] No cvmfs_config command found, will try listing directly
[2024-05-18 19:07:49] CVMFS is ok
[2024-05-18 19:07:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-18 19:07:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-18 19:07:49] Further information can be found at the LHC@home message board.
[2024-05-18 19:07:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 19:07:49] Checking for apptainer binary...
[2024-05-18 19:07:49] which: no apptainer in ((null))
[2024-05-18 19:07:49] apptainer is not installed, using version from CVMFS
[2024-05-18 19:07:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 19:07:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2024-05-18 19:07:50] apptainer works
[2024-05-18 19:07:50] Set ATHENA_PROC_NUMBER=4
[2024-05-18 19:07:50] Set ATHENA_CORE_NUMBER=4
[2024-05-18 19:07:50] Starting ATLAS job with PandaID=6207333118
[2024-05-18 19:07:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 21:21:09]  *** The last 200 lines of the pilot log: ***
[2024-05-18 21:21:09] 2024-05-18 19:20:49,744 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 21:21:09] 2024-05-18 19:20:49,744 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 21:21:09] 2024-05-18 19:20:49,746 | INFO     | fitting pss+swap vs Time
[2024-05-18 21:21:09] 2024-05-18 19:20:49,746 | INFO     | model: linear, x: [1716052106.0, 1716052167.0, 1716052228.0, 1716052289.0, 1716052350.0, 1716052411.0, 1716052472.0, 1716052533.0, 1716052594.0, 1716052655.0, 1716
[2024-05-18 21:21:09] 2024-05-18 19:20:49,746 | INFO     | sum of square deviations: 697054930.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | sum of deviations: 49200324029.000015
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | mean x: 1716056071.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | mean y: 2211704.5954198474
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | -- intersect: -121122410059.62144
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | intersect: -121122410059.62144
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | chi2: 5.06018336495141
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | model: linear, x: [1716052106.0, 1716052167.0, 1716052228.0, 1716052289.0, 1716052350.0, 1716052411.0, 1716052472.0, 1716052533.0, 1716052594.0, 1716052655.0, 1716
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | sum of square deviations: 620244187.5
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | sum of deviations: 55218464713.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,747 | INFO     | mean x: 1716055918.5
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | mean y: 2223142.73015873
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | -- intersect: -152773046808.8759
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | intersect: -152773046808.8759
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | chi2: 4.257377980292383
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | current chi2=4.257377980292383 (change=15.865144141209111 %)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | right removable region: 125
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | model: linear, x: [1716052411.0, 1716052472.0, 1716052533.0, 1716052594.0, 1716052655.0, 1716052716.0, 1716052777.0, 1716052838.0, 1716052899.0, 1716052960.0, 1716
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | sum of square deviations: 620244187.5
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | sum of deviations: 19752478930.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,748 | INFO     | mean x: 1716056223.5
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | mean y: 2269929.3492063493
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | -- intersect: -54647761591.30752
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | intersect: -54647761591.30752
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | chi2: 2.5204673026391617
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | current chi2=2.5204673026391617 (change=50.190198242680395 %)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | model: linear, x: [1716052716.0, 1716052777.0, 1716052838.0, 1716052899.0, 1716052960.0, 1716053021.0, 1716053082.0, 1716053143.0, 1716053204.0, 1716053265.0, 1716
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | sum of square deviations: 549294020.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | sum of deviations: -4787338804.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | mean x: 1716056376.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | mean y: 2322708.479338843
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | -- intersect: 14958508247.649078
[2024-05-18 21:21:09] 2024-05-18 19:20:49,749 | INFO     | intersect: 14958508247.649078
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | chi2: 0.8961381253157463
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | current chi2=0.8961381253157463 (change=64.44555641021778 %)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | model: linear, x: [1716053021.0, 1716053082.0, 1716053143.0, 1716053204.0, 1716053265.0, 1716053326.0, 1716053387.0, 1716053448.0, 1716053509.0, 1716053570.0, 1716
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | sum of square deviations: 483971865.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | sum of deviations: -7503140605.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | mean x: 1716056528.5
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | mean y: 2328891.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | -- intersect: 26606795701.20123
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | intersect: 26606795701.20123
[2024-05-18 21:21:09] 2024-05-18 19:20:49,750 | INFO     | chi2: 0.8445515948720749
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | current chi2=0.8445515948720749 (change=5.756537857988733 %)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | left removable region: 30
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | model: linear, x: [1716053936.0, 1716053997.0, 1716054058.0, 1716054119.0, 1716054180.0, 1716054241.0, 1716054302.0, 1716054363.0, 1716054424.0, 1716054485.0, 1716
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | sum of square deviations: 265828240.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | sum of deviations: -244348797.9999999
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | mean x: 1716056803.0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | mean y: 2347562.9263157896
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | -- intersect: 1579743618.036084
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | intersect: 1579743618.036084
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | chi2: 0.0001532902906303327
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | -- intersect: 1579743618.036084
[2024-05-18 21:21:09] 2024-05-18 19:20:49,751 | INFO     | current memory leak: -0.92 B/s (using 95 data points, chi2=0.00)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | ..............................
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . Timing measurements:
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . get job = 0 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . initial setup = 1 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . payload setup = 5 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . stage-in = 0 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . payload execution = 7935 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . stage-out = 0 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | . log creation = 0 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,752 | INFO     | ..............................
[2024-05-18 21:21:09] 2024-05-18 19:20:49,811 | INFO     | 
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | job summary report
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | --------------------------------------------------
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | PanDA job id: 6207333118
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | task id: 38776104
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | errors: (none)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | pilot state: finished 
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | transexitcode: 0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | exeerrorcode: 0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | exeerrordiag: 
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | exitcode: 0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,812 | INFO     | exitmsg: OK
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | cpuconsumptiontime: 29117 s
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | nevents: 400
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | neventsw: 0
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | pid: 2493266
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | pgrp: 2493266
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | corecount: 4
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | event service: False
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | sizes: {0: 2392207, 4: 2392413, 11: 2392441, 7944: 2420112, 7946: 2429096, 7949: 2429152, 7954: 2429450}
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | --------------------------------------------------
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | 
[2024-05-18 21:21:09] 2024-05-18 19:20:49,813 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/1
[2024-05-18 21:21:09] 2024-05-18 19:20:49,831 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | job 6207333118 has completed (purged errors)
[2024-05-18 21:21:09] 2024-05-18 19:20:49,833 | INFO     | overall cleanup function is called
[2024-05-18 21:21:09] 2024-05-18 19:20:50,842 | INFO     | --- collectZombieJob: --- 10, [2493266]
[2024-05-18 21:21:09] 2024-05-18 19:20:50,842 | INFO     | zombie collector waiting for pid 2493266
[2024-05-18 21:21:09] 2024-05-18 19:20:50,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 21:21:09] 2024-05-18 19:20:51,844 | INFO     | collected zombie processes
[2024-05-18 21:21:09] 2024-05-18 19:20:51,844 | INFO     | will now attempt to kill all subprocesses of pid=2493266
[2024-05-18 21:21:09] 2024-05-18 19:20:52,059 | INFO     | process IDs to be killed: [2493266] (in reverse order)
[2024-05-18 21:21:09] 2024-05-18 19:20:52,241 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 21:21:09] 2024-05-18 19:20:52,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 21:21:09] 2024-05-18 19:20:52,262 | INFO     | did not find any defunct processes belonging to 2493266
[2024-05-18 21:21:09] 2024-05-18 19:20:52,273 | INFO     | did not find any defunct processes belonging to 2493266
[2024-05-18 21:21:09] 2024-05-18 19:20:52,273 | INFO     | ready for new job
[2024-05-18 21:21:09] 2024-05-18 19:20:52,273 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 21:21:09] 2024-05-18 19:20:52,274 | INFO     | *************************************
[2024-05-18 21:21:09] 2024-05-18 19:20:52,274 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 21:21:09] 2024-05-18 19:20:52,274 | INFO     | *************************************
[2024-05-18 21:21:09] 2024-05-18 19:20:52,274 | INFO     | 
[2024-05-18 21:21:09] 2024-05-18 19:20:52,279 | INFO     | architecture information:
[2024-05-18 21:21:09] 2024-05-18 19:20:52,279 | INFO     | executing command: cat /etc/os-release
[2024-05-18 21:21:09] 2024-05-18 19:20:52,294 | INFO     | cat /etc/os-release:
[2024-05-18 21:21:09] NAME="CentOS Linux"
[2024-05-18 21:21:09] VERSION="7 (Core)"
[2024-05-18 21:21:09] ID="centos"
[2024-05-18 21:21:09] ID_LIKE="rhel fedora"
[2024-05-18 21:21:09] VERSION_ID="7"
[2024-05-18 21:21:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 21:21:09] ANSI_COLOR="0;31"
[2024-05-18 21:21:09] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 21:21:09] HOME_URL="https://www.centos.org/"
[2024-05-18 21:21:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 21:21:09] 
[2024-05-18 21:21:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 21:21:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 21:21:09] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 21:21:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 21:21:09] 
[2024-05-18 21:21:09] 2024-05-18 19:20:52,294 | INFO     | *************************************
[2024-05-18 21:21:09] 2024-05-18 19:20:52,797 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/1
[2024-05-18 21:21:09] 2024-05-18 19:20:52,818 | INFO     | sufficient remaining disk space (2974812209152 B)
[2024-05-18 21:21:09] 2024-05-18 19:20:52,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 21:21:09] 2024-05-18 19:20:52,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 21:21:09] 2024-05-18 19:20:52,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 21:21:09] 2024-05-18 19:20:52,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 21:21:09] 2024-05-18 19:20:52,820 | INFO     | aborting loop
[2024-05-18 21:21:09] 2024-05-18 19:20:52,836 | INFO     | all payload control threads have been joined
[2024-05-18 21:21:09] 2024-05-18 19:20:52,837 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 21:21:09] 2024-05-18 19:20:52,837 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 21:21:09] 2024-05-18 19:20:52,837 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 21:21:09] 2024-05-18 19:20:53,304 | INFO     | all data control threads have been joined
[2024-05-18 21:21:09] 2024-05-18 19:20:53,824 | INFO     | [job] retrieve thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:53,825 | INFO     | [job] job monitor thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:53,841 | INFO     | [payload] control thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:53,873 | INFO     | [payload] validate_post thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:53,907 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:53,950 | INFO     | all job control threads have been joined
[2024-05-18 21:21:09] 2024-05-18 19:20:54,309 | INFO     | [data] control thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:54,506 | INFO     | [payload] failed_post thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:54,511 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:54,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 21:21:09] 2024-05-18 19:20:54,823 | INFO     | [data] copytool_out thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:54,955 | INFO     | [job] control thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:55,009 | INFO     | [job] validate thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:55,113 | INFO     | [data] copytool_in thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:55,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 21:21:09] 2024-05-18 19:20:55,316 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:55,827 | INFO     | [job] queue monitor thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:20:59,264 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:21:02,876 | INFO     | job.realtimelogging is not enabled
[2024-05-18 21:21:09] 2024-05-18 19:21:03,881 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 21:21:09] 2024-05-18 19:21:03,999 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47501550666816)>', '<ExcThread(monitor, started 47501721917184)>']
[2024-05-18 21:21:09] 2024-05-18 19:21:04,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 21:21:09] 2024-05-18 19:21:04,886 | INFO     | [monitor] control thread has ended
[2024-05-18 21:21:09] 2024-05-18 19:21:09,024 | INFO     | all workflow threads have been joined
[2024-05-18 21:21:09] 2024-05-18 19:21:09,024 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 21:21:09] 2024-05-18 19:21:09,025 | INFO     | traces error code: 0
[2024-05-18 21:21:09] 2024-05-18 19:21:09,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 21:21:09] 2024-05-18 19:21:09,087 [wrapper] ==== pilot stdout END ====
[2024-05-18 21:21:09] 2024-05-18 19:21:09,090 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 21:21:09] 2024-05-18 19:21:09,093 [wrapper] pilotpid: 2485662
[2024-05-18 21:21:09] 2024-05-18 19:21:09,095 [wrapper] Pilot exit status: 0
[2024-05-18 21:21:09] 2024-05-18 19:21:09,106 [wrapper] pandaids: 6207333118
[2024-05-18 21:21:09] 2024-05-18 19:21:09,195 [wrapper] cleanup: SIGTERM to supervisor_pilot 3078219 2485663
[2024-05-18 21:21:09] 2024-05-18 19:21:09,198 [wrapper] Test setup, not cleaning
[2024-05-18 21:21:09] 2024-05-18 19:21:09,200 [wrapper] ==== wrapper stdout END ====
[2024-05-18 21:21:09] 2024-05-18 19:21:09,202 [wrapper] ==== wrapper stderr END ====
[2024-05-18 21:21:09] 2024-05-18 19:21:09,206 [wrapper] apfmon messages muted
[2024-05-18 21:21:09]  *** Error codes and diagnostics ***
[2024-05-18 21:21:09]     "exeErrorCode": 0,
[2024-05-18 21:21:09]     "exeErrorDiag": "",
[2024-05-18 21:21:09]     "pilotErrorCode": 0,
[2024-05-18 21:21:09]     "pilotErrorDiag": "",
[2024-05-18 21:21:09]  *** Listing of results directory ***
[2024-05-18 21:21:09] total 821688
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc    467845 May 16 12:30 pilot3.tar.gz
[2024-05-18 21:21:09] -rwx------ 1 boinc boinc     32251 May 16 13:04 runpilot2-wrapper.sh
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc      5633 May 16 13:04 queuedata.json
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc       100 May 18 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 21:21:09] -rwxr-xr-x 1 boinc boinc      7986 May 18 18:10 run_atlas
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc       105 May 18 18:10 job.xml
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc      6646 May 18 19:07 init_data.xml
[2024-05-18 21:21:09] -rw-r--r-- 2 boinc boinc 603836335 May 18 19:07 EVNT.38776100._000030.pool.root.1
[2024-05-18 21:21:09] -rw-r--r-- 2 boinc boinc     17537 May 18 19:07 start_atlas.sh
[2024-05-18 21:21:09] drwxrwx--x 2 boinc boinc      4096 May 18 19:07 shared
[2024-05-18 21:21:09] -rw-r--r-- 2 boinc boinc    480002 May 18 19:07 input.tar.gz
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc         0 May 18 19:07 boinc_lockfile
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc      2637 May 18 19:07 pandaJob.out
[2024-05-18 21:21:09] -rw------- 1 boinc boinc       424 May 18 19:07 setup.sh.local
[2024-05-18 21:21:09] -rw------- 1 boinc boinc   1019426 May 18 19:07 agis_schedconf.cvmfs.json
[2024-05-18 21:21:09] -rw------- 1 boinc boinc         0 May 18 19:07 agis_ddmendpoints.agis.ALL.json
[2024-05-18 21:21:09] -rw------- 1 boinc boinc   1324701 May 18 19:07 cric_ddmendpoints.json
[2024-05-18 21:21:09] drwx------ 4 boinc boinc      4096 May 18 19:08 pilot3
[2024-05-18 21:21:09] -rw------- 1 boinc boinc 231824752 May 18 21:20 HITS.38776104._009646.pool.root.1
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc       531 May 18 21:20 boinc_task_state.xml
[2024-05-18 21:21:09] -rw------- 1 boinc boinc        95 May 18 21:20 pilot_heartbeat.json
[2024-05-18 21:21:09] -rw------- 1 boinc boinc      1041 May 18 21:20 memory_monitor_summary.json
[2024-05-18 21:21:09] -rw------- 1 boinc boinc    284492 May 18 21:20 log.38776104._009646.job.log.tgz.1
[2024-05-18 21:21:09] -rw------- 1 boinc boinc      7710 May 18 21:20 heartbeat.json
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc        27 May 18 21:21 wrapper_checkpoint.txt
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc      8192 May 18 21:21 boinc_mmap_file
[2024-05-18 21:21:09] -rw------- 1 boinc boinc      4295 May 18 21:21 pilotlog.txt
[2024-05-18 21:21:09] -rw------- 1 boinc boinc    824249 May 18 21:21 log.38776104._009646.job.log.1
[2024-05-18 21:21:09] -rw------- 1 boinc boinc       357 May 18 21:21 output.list
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc       620 May 18 21:21 runtime_log
[2024-05-18 21:21:09] -rw------- 1 boinc boinc   1126400 May 18 21:21 result.tar.gz
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc     11428 May 18 21:21 runtime_log.err
[2024-05-18 21:21:09] -rw------- 1 boinc boinc       655 May 18 21:21 k8YLDmM5nR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmbXPKDmeRhYYm.diag
[2024-05-18 21:21:09] -rw-r--r-- 1 boinc boinc     21255 May 18 21:21 stderr.txt
[2024-05-18 21:21:09] HITS file was successfully produced:
[2024-05-18 21:21:09] -rw------- 1 boinc boinc 231824752 May 18 21:20 shared/HITS.pool.root.1
[2024-05-18 21:21:09]  *** Contents of shared directory: ***
[2024-05-18 21:21:09] total 817676
[2024-05-18 21:21:09] -rw-r--r-- 2 boinc boinc 603836335 May 18 19:07 ATLAS.root_0
[2024-05-18 21:21:09] -rw-r--r-- 2 boinc boinc     17537 May 18 19:07 start_atlas.sh
[2024-05-18 21:21:09] -rw-r--r-- 2 boinc boinc    480002 May 18 19:07 input.tar.gz
[2024-05-18 21:21:09] -rw------- 1 boinc boinc 231824752 May 18 21:20 HITS.pool.root.1
[2024-05-18 21:21:09] -rw------- 1 boinc boinc   1126400 May 18 21:21 result.tar.gz
21:21:11 (2480261): run_atlas exited; CPU time 28956.825707
21:21:11 (2480261): called boinc_finish(0)

</stderr_txt>
]]>

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