Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-18 06:48:26 (92036): Detected: vboxwrapper 26206
2024-05-18 06:48:26 (92036): Detected: BOINC client v7.24.1
2024-05-18 06:48:27 (92036): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2024-05-18 06:48:27 (92036): Successfully copied 'init_data.xml' to the shared directory.
2024-05-18 06:48:27 (92036): Create VM. (boinc_a46bf06c874b219a, slot#9)
2024-05-18 06:48:29 (92036): Setting Memory Size for VM. (4800MB)
2024-05-18 06:48:29 (92036): Setting CPU Count for VM. (8)
2024-05-18 06:48:30 (92036): Setting Chipset Options for VM.
2024-05-18 06:48:30 (92036): Setting Graphics Controller Options for VM.
2024-05-18 06:48:30 (92036): Setting Boot Options for VM.
2024-05-18 06:48:31 (92036): Setting Network Configuration for NAT.
2024-05-18 06:48:31 (92036): Enabling VM Network Access.
2024-05-18 06:48:31 (92036): Disabling USB Support for VM.
2024-05-18 06:48:32 (92036): Disabling COM Port Support for VM.
2024-05-18 06:48:32 (92036): Disabling LPT Port Support for VM.
2024-05-18 06:48:32 (92036): Disabling Audio Support for VM.
2024-05-18 06:48:32 (92036): Disabling Clipboard Support for VM.
2024-05-18 06:48:33 (92036): Disabling Drag and Drop Support for VM.
2024-05-18 06:48:33 (92036): Adding storage controller(s) to VM.
2024-05-18 06:48:33 (92036): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-18 06:48:34 (92036): Adding VirtualBox Guest Additions to VM.
2024-05-18 06:48:34 (92036): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-18 06:48:34 (92036): forwarding host port 54905 to guest port 80
2024-05-18 06:48:35 (92036): Enabling remote desktop for VM.
2024-05-18 06:48:35 (92036): Required extension pack not installed, remote desktop not enabled.
2024-05-18 06:48:35 (92036): Enabling shared directory for VM.
2024-05-18 06:48:35 (92036): Starting VM using VBoxManage interface. (boinc_a46bf06c874b219a, slot#9)
2024-05-18 06:48:41 (92036): Successfully started VM. (PID = '92096')
2024-05-18 06:48:41 (92036): Reporting VM Process ID to BOINC.
2024-05-18 06:48:41 (92036): Guest Log: BIOS: VirtualBox 6.1.34
2024-05-18 06:48:41 (92036): Guest Log: CPUID EDX: 0x178bfbff
2024-05-18 06:48:41 (92036): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-18 06:48:41 (92036): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-18 06:48:41 (92036): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-18 06:48:41 (92036): Detected: Web Application Enabled (http://localhost:54905)
2024-05-18 06:48:41 (92036): Preference change detected
2024-05-18 06:48:41 (92036): Setting CPU throttle for VM. (100%)
2024-05-18 06:48:42 (92036): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-18 06:48:43 (92036): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-18 06:48:43 (92036): Guest Log: BIOS: Booting from Hard Disk...
2024-05-18 06:48:46 (92036): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-18 06:48:46 (92036): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-18 06:48:46 (92036): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-18 06:48:57 (92036): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-18 06:48:57 (92036): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-18 06:49:12 (92036): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000201 main     Log opened 2024-05-18T06:49:10.238424000Z
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000331 main     OS Product: Linux
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000377 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000413 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000450 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000451 main     Process ID: 1385
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.000451 main     Package type: LINUX_64BITS_GENERIC
2024-05-18 06:49:12 (92036): Guest Log: 00:00:00.002017 main     5.2.32 r132073 started. Verbose level = 0
2024-05-18 06:49:12 (92036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-18 06:49:12 (92036): Guest Log: [INFO] Mounting shared directory
2024-05-18 06:49:12 (92036): Guest Log: [INFO] Checking for init_data.xml
2024-05-18 06:49:19 (92036): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-18 06:49:19 (92036): Guest Log: [INFO] Detected branch: prod
2024-05-18 06:49:19 (92036): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-18 06:49:19 (92036): Guest Log: Copying input files
2024-05-18 06:49:22 (92036): Guest Log: 00:00:10.005147 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 347 580 000ns (GuestNow=1 716 007 761 895 354 000 ns GuestLast=1 716 014 950 242 934 000 ns fSetTimeLastLoop=true )
2024-05-18 06:49:30 (92036): Guest Log: Copied input files into RunAtlas.
2024-05-18 06:49:30 (92036): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-18 06:49:30 (92036): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-18 06:49:30 (92036): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-18 06:49:30 (92036): Guest Log: Further information can be found at the LHC@home message board.
2024-05-18 06:49:41 (92036): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-18 06:49:41 (92036): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-18 06:49:41 (92036): Guest Log: 2.6.3.0 1665 0 30220 132867 4 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-18 06:49:44 (92036): Guest Log: copied the webapp to /var/www
2024-05-18 06:49:44 (92036): Guest Log: ATHENA_PROC_NUMBER=8
2024-05-18 06:49:44 (92036): Guest Log: ATHENA_CORE_NUMBER=8
2024-05-18 06:49:44 (92036): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-18 06:49:44 (92036): Guest Log:  *** Starting ATLAS job. (PandaID=6207313106 taskID=38920995) ***
2024-05-18 08:28:46 (92036): Status Report: Elapsed Time: '6000.000000'
2024-05-18 08:28:46 (92036): Status Report: CPU Time: '39045.453125'
2024-05-18 10:08:50 (92036): Status Report: Elapsed Time: '12000.000000'
2024-05-18 10:08:50 (92036): Status Report: CPU Time: '86741.218750'
2024-05-18 11:48:54 (92036): Status Report: Elapsed Time: '18000.000000'
2024-05-18 11:48:54 (92036): Status Report: CPU Time: '134431.312500'
2024-05-18 13:06:42 (92036): Guest Log:  *** Job finished ***
2024-05-18 13:06:42 (92036): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:30,999 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:31,156 | INFO     | [job] queue monitor thread has finished
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:35,061 | INFO     | [data] queue_monitor thread has finished
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:35,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310794209088)>', '<ExcThread(monitor, started 140309988103936)>']
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:35,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:35,904 | INFO     | [monitor] control thread has ended
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,326 | INFO     | all workflow threads have been joined
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,326 | INFO     | end of generic workflow (traces error code: 0)
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,326 | INFO     | traces error code: 0
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,421 [wrapper] ==== pilot stdout END ====
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,429 [wrapper] ==== wrapper stdout RESUME ====
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,435 [wrapper] pilotpid: 6585
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,447 [wrapper] Pilot exit status: 0
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,529 [wrapper] pandaids: 6207313106
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,568 [wrapper] cleanup: SIGTERM to supervisor_pilot 28203 6586
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,575 [wrapper] Test setup, not cleaning
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,581 [wrapper] ==== wrapper stdout END ====
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,588 [wrapper] ==== wrapper stderr END ====
2024-05-18 13:06:42 (92036): Guest Log: 2024-05-18 11:06:40,603 [wrapper] apfmon messages muted
2024-05-18 13:06:42 (92036): Guest Log:  *** Error codes and diagnostics ***
2024-05-18 13:06:42 (92036): Guest Log:     "exeErrorCode": 0,
2024-05-18 13:06:42 (92036): Guest Log:     "exeErrorDiag": "",
2024-05-18 13:06:42 (92036): Guest Log:     "pilotErrorCode": 0,
2024-05-18 13:06:42 (92036): Guest Log:     "pilotErrorDiag": "",
2024-05-18 13:06:42 (92036): Guest Log:  *** Listing of results directory ***
2024-05-18 13:06:42 (92036): Guest Log: total 354388
2024-05-18 13:06:42 (92036): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 16 08:25 pilot3.tar.gz
2024-05-18 13:06:42 (92036): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 16 08:46 queuedata.json
2024-05-18 13:06:42 (92036): Guest Log: -rwx------. 1 atlas atlas     32251 May 16 08:47 runpilot2-wrapper.sh
2024-05-18 13:06:42 (92036): Guest Log: -rwxr-xr-x. 1 atlas atlas      9143 May 18 04:49 init_data.xml
2024-05-18 13:06:42 (92036): Guest Log: -rwxr-xr-x. 1 atlas atlas    480003 May 18 04:49 input.tar.gz
2024-05-18 13:06:42 (92036): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 18 04:49 start_atlas.sh
2024-05-18 13:06:42 (92036): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 18 04:49 EVNT.38776180._000161.pool.root.1 -> /data/./ATLAS.root_0
2024-05-18 13:06:42 (92036): Guest Log: -rw-r--r--. 1 atlas atlas      2612 May 18 04:49 pandaJob.out
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas       424 May 18 04:49 setup.sh.local
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas   1019065 May 18 04:50 agis_schedconf.cvmfs.json
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas   1324701 May 18 04:50 cric_ddmendpoints.json
2024-05-18 13:06:42 (92036): Guest Log: drwx------. 4 atlas atlas      4096 May 18 04:50 pilot3
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas 354740393 May 18 11:05 HITS.38920995._004068.pool.root.1
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas        95 May 18 11:05 pilot_heartbeat.json
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas      1035 May 18 11:06 memory_monitor_summary.json
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas         0 May 18 11:06 agis_ddmendpoints.agis.ALL.json
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas    442319 May 18 11:06 log.38920995._004068.job.log.tgz.1
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas      7747 May 18 11:06 heartbeat.json
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas      4580 May 18 11:06 pilotlog.txt
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas   1900744 May 18 11:06 log.38920995._004068.job.log.1
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas       357 May 18 11:06 output.list
2024-05-18 13:06:42 (92036): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 18 11:06 runtime_log
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas   2365440 May 18 11:06 result.tar.gz
2024-05-18 13:06:42 (92036): Guest Log: -rw-r--r--. 1 atlas atlas     10931 May 18 11:06 runtime_log.err
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas       649 May 18 11:06 idBODmtwlR5nsSi4apGgGQJmABFKDmABFKDm4ySLDm6TPKDmjnOdhn.diag
2024-05-18 13:06:42 (92036): Guest Log: Looking for outputfile HITS.38920995._004068.pool.root.1
2024-05-18 13:06:42 (92036): Guest Log: HITS file was successfully produced
2024-05-18 13:06:42 (92036): Guest Log: -rw-------. 1 atlas atlas 354740393 May 18 11:05 /home/atlas/RunAtlas/HITS.38920995._004068.pool.root.1
2024-05-18 13:06:44 (92036): Guest Log: Successfully finished the ATLAS job!
2024-05-18 13:06:44 (92036): Guest Log: Copying the results back to the shared directory!
2024-05-18 13:06:44 (92036): Guest Log:  *** Contents of shared directory: ***
2024-05-18 13:06:44 (92036): Guest Log: total 969356
2024-05-18 13:06:44 (92036): Guest Log: -rwxrwxrwx. 1 root root 634993549 May 18 04:48 ATLAS.root_0
2024-05-18 13:06:44 (92036): Guest Log: -rwxrwxrwx. 1 root root 354740393 May 18 11:06 HITS.pool.root.1
2024-05-18 13:06:44 (92036): Guest Log: -rwxrwxrwx. 1 root root      9143 May 18 04:48 init_data.xml
2024-05-18 13:06:44 (92036): Guest Log: -rwxrwxrwx. 1 root root    480003 May 16 15:46 input.tar.gz
2024-05-18 13:06:44 (92036): Guest Log: -rwxrwxrwx. 1 root root   2365440 May 18 11:06 result.tar.gz
2024-05-18 13:06:44 (92036): Guest Log: -rwxrwxrwx. 1 root root     17537 May 16 15:46 start_atlas.sh
2024-05-18 13:06:44 (92036): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-18 13:06:44 (92036): VM Completion File Detected.
2024-05-18 13:06:44 (92036): Powering off VM.
2024-05-18 13:06:46 (92036): Successfully stopped VM.
2024-05-18 13:06:46 (92036): Deregistering VM. (boinc_a46bf06c874b219a, slot#9)
2024-05-18 13:06:46 (92036): Removing network bandwidth throttle group from VM.
2024-05-18 13:06:46 (92036): Removing VM from VirtualBox.
13:06:51 (92036): called boinc_finish(0)

</stderr_txt>
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