Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:34 (33452): wrapper (7.7.26015): starting
10:33:34 (33452): wrapper: running run_atlas (--nthreads 8)
[2024-05-16 10:33:34] Arguments: --nthreads 8
[2024-05-16 10:33:34] Threads: 8
[2024-05-16 10:33:34] Checking for CVMFS
[2024-05-16 10:33:34] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-16 10:33:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-16 10:33:34] Running cvmfs_config stat atlas.cern.ch
[2024-05-16 10:33:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-16 10:33:34] 2.11.2.0 91391 2368 200016 132800 2 241 11632498 18432001 5496 130560 0 15145114 99.052 27322138 45177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-16 10:33:34] CVMFS is ok
[2024-05-16 10:33:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 10:33:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 10:33:34] Further information can be found at the LHC@home message board.
[2024-05-16 10:33:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 10:33:34] Checking for apptainer binary...
[2024-05-16 10:33:34] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-16 10:33:34] Running /usr/bin/apptainer --version
[2024-05-16 10:33:34] apptainer version 1.3.0-1.el7
[2024-05-16 10:33:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 10:33:35] c6-8-25-3.aglt2.org
[2024-05-16 10:33:35] apptainer works
[2024-05-16 10:33:35] Set ATHENA_PROC_NUMBER=8
[2024-05-16 10:33:35] Set ATHENA_CORE_NUMBER=8
[2024-05-16 10:33:35] Starting ATLAS job with PandaID=6207240661
[2024-05-16 10:33:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 13:01:16]  *** The last 200 lines of the pilot log: ***
[2024-05-16 13:01:16] 2024-05-16 17:00:53,098 | INFO     | this job has now completed (state=finished)
[2024-05-16 13:01:16] 2024-05-16 17:00:53,098 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 13:01:16] 2024-05-16 17:00:53,098 | INFO     | job 6207240661 has finished - writing final server update
[2024-05-16 13:01:16] 2024-05-16 17:00:53,099 | INFO     | total number of processed events: 400 (read)
[2024-05-16 13:01:16] 2024-05-16 17:00:53,106 | INFO     | executing command: lscpu
[2024-05-16 13:01:16] 2024-05-16 17:00:53,150 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-16 13:01:16] 2024-05-16 17:00:53,150 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 13:01:16] 2024-05-16 17:00:53,189 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 13:01:16] 2024-05-16 17:00:53,805 | INFO     | monitor loop #681: job 0:6207240661 is in state 'finished'
[2024-05-16 13:01:16] 2024-05-16 17:00:53,805 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,788 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-16 13:01:16] 2024-05-16 17:00:55,789 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6207240661/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,789 | INFO     | extracted standard info from prmon json
[2024-05-16 13:01:16] 2024-05-16 17:00:55,789 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 13:01:16] 2024-05-16 17:00:55,789 | WARNING  | GPU info not found in prmon json
[2024-05-16 13:01:16] 2024-05-16 17:00:55,790 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-16 13:01:16] 2024-05-16 17:00:55,790 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-16 13:01:16] 2024-05-16 17:00:55,791 | INFO     | fitting pss+swap vs Time
[2024-05-16 13:01:16] 2024-05-16 17:00:55,791 | INFO     | model: linear, x: [1715870044.0, 1715870105.0, 1715870166.0, 1715870227.0, 1715870288.0, 1715870349.0, 1715870410.0, 1715870471.0, 1715870532.0, 1715870593.0, 1715
[2024-05-16 13:01:16] 2024-05-16 17:00:55,791 | INFO     | sum of square deviations: 945282840.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | sum of deviations: 194819481511.99997
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | mean x: 1715874436.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | mean y: 2099496.834482759
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | -- intersect: -353633610172.04663
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | intersect: -353633610172.04663
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | chi2: 10.715120250718982
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | model: linear, x: [1715870044.0, 1715870105.0, 1715870166.0, 1715870227.0, 1715870288.0, 1715870349.0, 1715870410.0, 1715870471.0, 1715870532.0, 1715870593.0, 1715
[2024-05-16 13:01:16] 2024-05-16 17:00:55,792 | INFO     | sum of square deviations: 850825255.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | sum of deviations: 195399753101.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | mean x: 1715874283.5
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | mean y: 2099974.7285714285
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | -- intersect: -394064025093.756
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | intersect: -394064025093.756
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | chi2: 9.272259774644164
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | current chi2=9.272259774644164 (change=13.465648936399036 %)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | right removable region: 139
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | model: linear, x: [1715870349.0, 1715870410.0, 1715870471.0, 1715870532.0, 1715870593.0, 1715870654.0, 1715870715.0, 1715870776.0, 1715870837.0, 1715870898.0, 1715
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | sum of square deviations: 850825255.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,793 | INFO     | sum of deviations: 158755390180.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | mean x: 1715874588.5
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | mean y: 2157525.2714285715
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | -- intersect: -320162692068.0383
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | intersect: -320162692068.0383
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | chi2: 8.41093257504576
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | current chi2=8.41093257504576 (change=21.504076685640673 %)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | left removable region: 10
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | model: linear, x: [1715870654.0, 1715870715.0, 1715870776.0, 1715870837.0, 1715870898.0, 1715870959.0, 1715871020.0, 1715871081.0, 1715871142.0, 1715871203.0, 1715
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | sum of square deviations: 665612480.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | sum of deviations: 132267462964.99998
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | mean x: 1715874558.0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | mean y: 2207869.581395349
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | -- intersect: -340968524158.83655
[2024-05-16 13:01:16] 2024-05-16 17:00:55,794 | INFO     | intersect: -340968524158.83655
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | chi2: 6.326895573050138
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | -- intersect: -340968524158.83655
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | current memory leak: 198.72 B/s (using 129 data points, chi2=6.33)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | ..............................
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . Timing measurements:
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . get job = 0 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . initial setup = 2 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . payload setup = 3 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . stage-in = 0 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . payload execution = 8805 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . stage-out = 0 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | . log creation = 0 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,795 | INFO     | ..............................
[2024-05-16 13:01:16] 2024-05-16 17:00:55,842 | INFO     | 
[2024-05-16 13:01:16] 2024-05-16 17:00:55,842 | INFO     | job summary report
[2024-05-16 13:01:16] 2024-05-16 17:00:55,842 | INFO     | --------------------------------------------------
[2024-05-16 13:01:16] 2024-05-16 17:00:55,842 | INFO     | PanDA job id: 6207240661
[2024-05-16 13:01:16] 2024-05-16 17:00:55,842 | INFO     | task id: 38776125
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | errors: (none)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | pilot state: finished 
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | transexitcode: 0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | exeerrorcode: 0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | exeerrordiag: 
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | exitcode: 0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | exitmsg: OK
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | cpuconsumptiontime: 46847 s
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | nevents: 400
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | neventsw: 0
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | pid: 77666
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | pgrp: 77666
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | corecount: 8
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | event service: False
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | sizes: {0: 2392245, 3: 2392451, 11: 2392479, 8812: 2420600, 8813: 2429616, 8818: 2429730}
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | --------------------------------------------------
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | 
[2024-05-16 13:01:16] 2024-05-16 17:00:55,843 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,863 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,864 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 13:01:16] 2024-05-16 17:00:55,864 | INFO     | job 6207240661 has completed (purged errors)
[2024-05-16 13:01:16] 2024-05-16 17:00:55,864 | INFO     | overall cleanup function is called
[2024-05-16 13:01:16] 2024-05-16 17:00:56,869 | INFO     | --- collectZombieJob: --- 10, [77666]
[2024-05-16 13:01:16] 2024-05-16 17:00:56,869 | INFO     | zombie collector waiting for pid 77666
[2024-05-16 13:01:16] 2024-05-16 17:00:56,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 13:01:16] 2024-05-16 17:00:57,874 | INFO     | collected zombie processes
[2024-05-16 13:01:16] 2024-05-16 17:00:57,874 | INFO     | will now attempt to kill all subprocesses of pid=77666
[2024-05-16 13:01:16] 2024-05-16 17:00:57,993 | INFO     | process IDs to be killed: [77666] (in reverse order)
[2024-05-16 13:01:16] 2024-05-16 17:00:58,090 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 13:01:16] 2024-05-16 17:00:58,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 13:01:16] 2024-05-16 17:00:58,101 | INFO     | did not find any defunct processes belonging to 77666
[2024-05-16 13:01:16] 2024-05-16 17:00:58,110 | INFO     | did not find any defunct processes belonging to 77666
[2024-05-16 13:01:16] 2024-05-16 17:00:58,110 | INFO     | ready for new job
[2024-05-16 13:01:16] 2024-05-16 17:00:58,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 13:01:16] 2024-05-16 17:00:58,111 | INFO     | *************************************
[2024-05-16 13:01:16] 2024-05-16 17:00:58,111 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 13:01:16] 2024-05-16 17:00:58,111 | INFO     | *************************************
[2024-05-16 13:01:16] 2024-05-16 17:00:58,111 | INFO     | 
[2024-05-16 13:01:16] 2024-05-16 17:00:58,115 | INFO     | architecture information:
[2024-05-16 13:01:16] 2024-05-16 17:00:58,115 | INFO     | executing command: cat /etc/os-release
[2024-05-16 13:01:16] 2024-05-16 17:00:58,127 | INFO     | cat /etc/os-release:
[2024-05-16 13:01:16] NAME="CentOS Linux"
[2024-05-16 13:01:16] VERSION="7 (Core)"
[2024-05-16 13:01:16] ID="centos"
[2024-05-16 13:01:16] ID_LIKE="rhel fedora"
[2024-05-16 13:01:16] VERSION_ID="7"
[2024-05-16 13:01:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 13:01:16] ANSI_COLOR="0;31"
[2024-05-16 13:01:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 13:01:16] HOME_URL="https://www.centos.org/"
[2024-05-16 13:01:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 13:01:16] 
[2024-05-16 13:01:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 13:01:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 13:01:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 13:01:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 13:01:16] 
[2024-05-16 13:01:16] 2024-05-16 17:00:58,127 | INFO     | *************************************
[2024-05-16 13:01:16] 2024-05-16 17:00:58,630 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2024-05-16 13:01:16] 2024-05-16 17:00:58,644 | INFO     | sufficient remaining disk space (98799976448 B)
[2024-05-16 13:01:16] 2024-05-16 17:00:58,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 13:01:16] 2024-05-16 17:00:58,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 13:01:16] 2024-05-16 17:00:58,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 13:01:16] 2024-05-16 17:00:58,645 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 13:01:16] 2024-05-16 17:00:58,645 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 13:01:16] 2024-05-16 17:00:58,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 13:01:16] 2024-05-16 17:00:58,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 13:01:16] 2024-05-16 17:00:58,756 | INFO     | all data control threads have been joined
[2024-05-16 13:01:16] 2024-05-16 17:00:58,821 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-16 13:01:16] 2024-05-16 17:00:58,821 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-16 13:01:16] 2024-05-16 17:00:58,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 13:01:16] 2024-05-16 17:00:58,821 | INFO     | will abort loop
[2024-05-16 13:01:16] 2024-05-16 17:00:59,330 | INFO     | all payload control threads have been joined
[2024-05-16 13:01:16] 2024-05-16 17:00:59,649 | INFO     | [job] retrieve thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:00:59,693 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:00:59,754 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:00:59,761 | INFO     | [data] control thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:00:59,825 | INFO     | [job] job monitor thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:00,033 | INFO     | all job control threads have been joined
[2024-05-16 13:01:16] 2024-05-16 17:01:00,153 | INFO     | [payload] validate_post thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:00,334 | INFO     | [payload] control thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:00,650 | INFO     | [data] copytool_out thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:00,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 13:01:16] 2024-05-16 17:01:00,946 | INFO     | [data] copytool_in thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:00,980 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:00,991 | INFO     | [job] validate thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:01,038 | INFO     | [job] control thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:01,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 13:01:16] 2024-05-16 17:01:01,204 | INFO     | [payload] failed_post thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:01,853 | INFO     | [job] queue monitor thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:05,128 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:09,490 | INFO     | job.realtimelogging is not enabled
[2024-05-16 13:01:16] 2024-05-16 17:01:10,495 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 13:01:16] 2024-05-16 17:01:10,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439718033216)>', '<ExcThread(monitor, started 140439290099456)>']
[2024-05-16 13:01:16] 2024-05-16 17:01:11,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 13:01:16] 2024-05-16 17:01:11,705 | INFO     | [monitor] control thread has ended
[2024-05-16 13:01:16] 2024-05-16 17:01:15,897 | INFO     | all workflow threads have been joined
[2024-05-16 13:01:16] 2024-05-16 17:01:15,897 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 13:01:16] 2024-05-16 17:01:15,897 | INFO     | traces error code: 0
[2024-05-16 13:01:16] 2024-05-16 17:01:15,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 13:01:16] 2024-05-16 17:01:15,968 [wrapper] ==== pilot stdout END ====
[2024-05-16 13:01:16] 2024-05-16 17:01:15,970 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 13:01:16] 2024-05-16 17:01:15,971 [wrapper] pilotpid: 45304
[2024-05-16 13:01:16] 2024-05-16 17:01:15,973 [wrapper] Pilot exit status: 0
[2024-05-16 13:01:16] 2024-05-16 17:01:15,978 [wrapper] pandaids: 6207240661
[2024-05-16 13:01:16] 2024-05-16 17:01:16,031 [wrapper] cleanup: SIGTERM to supervisor_pilot 218792 45306
[2024-05-16 13:01:16] 2024-05-16 17:01:16,034 [wrapper] Test setup, not cleaning
[2024-05-16 13:01:16] 2024-05-16 17:01:16,036 [wrapper] ==== wrapper stdout END ====
[2024-05-16 13:01:16] 2024-05-16 17:01:16,038 [wrapper] ==== wrapper stderr END ====
[2024-05-16 13:01:16] 2024-05-16 17:01:16,041 [wrapper] apfmon messages muted
[2024-05-16 13:01:16]  *** Error codes and diagnostics ***
[2024-05-16 13:01:16]     "exeErrorCode": 0,
[2024-05-16 13:01:16]     "exeErrorDiag": "",
[2024-05-16 13:01:16]     "pilotErrorCode": 0,
[2024-05-16 13:01:16]     "pilotErrorDiag": "",
[2024-05-16 13:01:16]  *** Listing of results directory ***
[2024-05-16 13:01:16] total 828288
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas    467845 May 16 02:24 pilot3.tar.gz
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas      5633 May 16 02:29 queuedata.json
[2024-05-16 13:01:16] -rwx------ 1 boincer umatlas     32251 May 16 02:29 runpilot2-wrapper.sh
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas       100 May 16 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 13:01:16] -rwxr-xr-x 1 boincer umatlas      7986 May 16 10:33 run_atlas
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas       105 May 16 10:33 job.xml
[2024-05-16 13:01:16] -rw-r--r-- 2 boincer umatlas 600738933 May 16 10:33 EVNT.38776119._000338.pool.root.1
[2024-05-16 13:01:16] -rw-r--r-- 2 boincer umatlas     17537 May 16 10:33 start_atlas.sh
[2024-05-16 13:01:16] drwxrwx--x 2 boincer umatlas      4096 May 16 10:33 shared
[2024-05-16 13:01:16] -rw-r--r-- 2 boincer umatlas    480018 May 16 10:33 input.tar.gz
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas         0 May 16 10:33 boinc_lockfile
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas      2634 May 16 10:33 pandaJob.out
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas       467 May 16 10:33 setup.sh.local
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas   1014167 May 16 10:33 agis_schedconf.cvmfs.json
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas         0 May 16 10:33 agis_ddmendpoints.agis.ALL.json
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas   1324701 May 16 10:33 cric_ddmendpoints.json
[2024-05-16 13:01:16] drwx------ 4 boincer umatlas      4096 May 16 10:33 pilot3
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas      6382 May 16 12:54 init_data.xml
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas        95 May 16 13:00 pilot_heartbeat.json
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas       530 May 16 13:00 boinc_task_state.xml
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas 241485381 May 16 13:00 HITS.38776125._012850.pool.root.1
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas      1054 May 16 13:00 memory_monitor_summary.json
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas    345953 May 16 13:00 log.38776125._012850.job.log.tgz.1
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas      7761 May 16 13:00 heartbeat.json
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas        27 May 16 13:01 wrapper_checkpoint.txt
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas      8192 May 16 13:01 boinc_mmap_file
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas      4592 May 16 13:01 pilotlog.txt
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas    858656 May 16 13:01 log.38776125._012850.job.log.1
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas       357 May 16 13:01 output.list
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas       620 May 16 13:01 runtime_log
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas   1228800 May 16 13:01 result.tar.gz
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas     11409 May 16 13:01 runtime_log.err
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas       646 May 16 13:01 4XPODmpnjR5n7Olcko1bjSoqABFKDmABFKDmOtvXDmL9YKDmwWEefm.diag
[2024-05-16 13:01:16] -rw-r--r-- 1 boincer umatlas     21708 May 16 13:01 stderr.txt
[2024-05-16 13:01:16] HITS file was successfully produced:
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas 241485381 May 16 13:00 shared/HITS.pool.root.1
[2024-05-16 13:01:16]  *** Contents of shared directory: ***
[2024-05-16 13:01:16] total 824188
[2024-05-16 13:01:16] -rw-r--r-- 2 boincer umatlas 600738933 May 16 10:33 ATLAS.root_0
[2024-05-16 13:01:16] -rw-r--r-- 2 boincer umatlas     17537 May 16 10:33 start_atlas.sh
[2024-05-16 13:01:16] -rw-r--r-- 2 boincer umatlas    480018 May 16 10:33 input.tar.gz
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas 241485381 May 16 13:00 HITS.pool.root.1
[2024-05-16 13:01:16] -rw------- 1 boincer umatlas   1228800 May 16 13:01 result.tar.gz
13:01:17 (33452): run_atlas exited; CPU time 46706.784612
13:01:17 (33452): called boinc_finish(0)

</stderr_txt>
]]>

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