Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:50:00 (2667602): wrapper (7.7.26015): starting
16:50:00 (2667602): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 16:50:00] Arguments: --nthreads 4
[2024-05-19 16:50:00] Threads: 4
[2024-05-19 16:50:00] Checking for CVMFS
[2024-05-19 16:50:00] No cvmfs_config command found, will try listing directly
[2024-05-19 16:50:00] CVMFS is ok
[2024-05-19 16:50:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 16:50:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 16:50:00] Further information can be found at the LHC@home message board.
[2024-05-19 16:50:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 16:50:00] Checking for apptainer binary...
[2024-05-19 16:50:00] which: no apptainer in ((null))
[2024-05-19 16:50:00] apptainer is not installed, using version from CVMFS
[2024-05-19 16:50:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 16:50:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-05-19 16:50:01] apptainer works
[2024-05-19 16:50:01] Set ATHENA_PROC_NUMBER=4
[2024-05-19 16:50:01] Set ATHENA_CORE_NUMBER=4
[2024-05-19 16:50:01] Starting ATLAS job with PandaID=6207171435
[2024-05-19 16:50:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 02:39:13]  *** The last 200 lines of the pilot log: ***
[2024-05-20 02:39:13]  filesize=516413
[2024-05-20 02:39:13]  filetype=log
[2024-05-20 02:39:13]  guid=f79b9c3e-db5a-4dbd-b214-187b4eae6baf
[2024-05-20 02:39:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-20 02:39:13]  is_tar=False
[2024-05-20 02:39:13]  lfn=log.38921013._001008.job.log.tgz.1
[2024-05-20 02:39:13]  mtime=0
[2024-05-20 02:39:13]  protocol_id=None
[2024-05-20 02:39:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-20 02:39:13]  replicas=None
[2024-05-20 02:39:13]  scope=mc23_13p6TeV
[2024-05-20 02:39:13]  status=None
[2024-05-20 02:39:13]  status_code=0
[2024-05-20 02:39:13]  storage_token=
[2024-05-20 02:39:13]  surl=/scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6207171435/log.38921013._001008.job.log.tgz.1
[2024-05-20 02:39:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/f9/log.38921013._001008.job.log.tgz.1
[2024-05-20 02:39:13]  workdir=None
[2024-05-20 02:39:13] ]
[2024-05-20 02:39:13] 2024-05-20 00:38:43,688 | INFO     | transferring file log.38921013._001008.job.log.tgz.1 from /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6207171435/log.38921013._001008.job.log.tgz.1 to /scratch/b
[2024-05-20 02:39:13] 2024-05-20 00:38:43,689 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6207171435/log.38921013._001008.job.log.tgz.1 /scratch/boinc/var/slot40/slots/0/lo
[2024-05-20 02:39:13] 2024-05-20 00:38:43,708 | INFO     | adding to output.list: log.38921013._001008.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/f9/log.38921013._001008.job.log.tg
[2024-05-20 02:39:13] 2024-05-20 00:38:43,709 | INFO     | summary of transferred files:
[2024-05-20 02:39:13] 2024-05-20 00:38:43,709 | INFO     |  -- lfn=log.38921013._001008.job.log.tgz.1, status_code=0, status=transferred
[2024-05-20 02:39:13] 2024-05-20 00:38:43,709 | INFO     | stage-out finished correctly
[2024-05-20 02:39:13] 2024-05-20 00:38:44,999 | INFO     | monitor loop #2746: job 0:6207171435 is in state 'finished'
[2024-05-20 02:39:13] 2024-05-20 00:38:44,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 02:39:13] 2024-05-20 00:38:46,969 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-20 02:39:13] 2024-05-20 00:38:47,507 | INFO     | monitor loop #2747: job 0:6207171435 is in state 'finished'
[2024-05-20 02:39:13] 2024-05-20 00:38:47,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 02:39:13] 2024-05-20 00:38:47,740 | INFO     | job 6207171435 has state=finished
[2024-05-20 02:39:13] 2024-05-20 00:38:47,741 | INFO     | preparing for final server update for job 6207171435 in state='finished'
[2024-05-20 02:39:13] 2024-05-20 00:38:47,741 | INFO     | this job has now completed (state=finished)
[2024-05-20 02:39:13] 2024-05-20 00:38:47,741 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-20 02:39:13] 2024-05-20 00:38:47,741 | INFO     | job 6207171435 has finished - writing final server update
[2024-05-20 02:39:13] 2024-05-20 00:38:47,742 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2228392/.job.ad'
[2024-05-20 02:39:13] 2024-05-20 00:38:47,742 | INFO     | total number of processed events: 400 (read)
[2024-05-20 02:39:13] 2024-05-20 00:38:47,745 | INFO     | executing command: lscpu
[2024-05-20 02:39:13] 2024-05-20 00:38:47,779 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-05-20 02:39:13] 2024-05-20 00:38:47,780 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-20 02:39:13] 2024-05-20 00:38:47,801 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-20 02:39:13] 2024-05-20 00:38:50,011 | INFO     | monitor loop #2748: job 0:6207171435 is in state 'finished'
[2024-05-20 02:39:13] 2024-05-20 00:38:50,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,748 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-20 02:39:13] 2024-05-20 00:38:51,748 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6207171435/memory_monitor_summary.json (trf name=prmon)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,751 | INFO     | extracted standard info from prmon json
[2024-05-20 02:39:13] 2024-05-20 00:38:51,751 | INFO     | extracted standard memory fields from prmon json
[2024-05-20 02:39:13] 2024-05-20 00:38:51,752 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-20 02:39:13] 2024-05-20 00:38:51,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-20 02:39:13] 2024-05-20 00:38:51,759 | INFO     | fitting pss+swap vs Time
[2024-05-20 02:39:13] 2024-05-20 00:38:51,769 | INFO     | current chi2=3.8542329454414825 (change=16.383125061884197 %)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,769 | INFO     | right removable region: 573
[2024-05-20 02:39:13] 2024-05-20 00:38:51,774 | INFO     | current chi2=2.2828127743647206 (change=50.47479668115299 %)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,779 | INFO     | current chi2=0.8546914172199799 (change=62.55972338958765 %)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,784 | INFO     | current chi2=0.782451460581085 (change=8.45216825434692 %)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,784 | INFO     | left removable region: 30
[2024-05-20 02:39:13] 2024-05-20 00:38:51,789 | INFO     | current memory leak: 0.84 B/s (using 543 data points, chi2=0.01)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | ..............................
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . Timing measurements:
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . get job = 0 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . initial setup = 1 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . payload setup = 4 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . stage-in = 0 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . payload execution = 35291 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . stage-out = 1 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | . log creation = 0 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,790 | INFO     | ..............................
[2024-05-20 02:39:13] 2024-05-20 00:38:51,850 | INFO     | 
[2024-05-20 02:39:13] 2024-05-20 00:38:51,850 | INFO     | job summary report
[2024-05-20 02:39:13] 2024-05-20 00:38:51,850 | INFO     | --------------------------------------------------
[2024-05-20 02:39:13] 2024-05-20 00:38:51,850 | INFO     | PanDA job id: 6207171435
[2024-05-20 02:39:13] 2024-05-20 00:38:51,850 | INFO     | task id: 38921013
[2024-05-20 02:39:13] 2024-05-20 00:38:51,850 | INFO     | errors: (none)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | pilot state: finished 
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | transexitcode: 0
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | exeerrorcode: 0
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | exeerrordiag: 
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | exitcode: 0
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | exitmsg: OK
[2024-05-20 02:39:13] 2024-05-20 00:38:51,851 | INFO     | cpuconsumptiontime: 138017 s
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | nevents: 400
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | neventsw: 0
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | pid: 2679132
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | pgrp: 2679132
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | corecount: 4
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | event service: False
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | sizes: {0: 2392220, 3: 2392426, 11: 2392454, 35298: 2432834, 35299: 2432833, 35300: 2441871, 35303: 2442055, 35308: 2442225}
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | --------------------------------------------------
[2024-05-20 02:39:13] 2024-05-20 00:38:51,852 | INFO     | 
[2024-05-20 02:39:13] 2024-05-20 00:38:51,853 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-05-20 02:39:13] 2024-05-20 00:38:51,871 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,871 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,871 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,871 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,871 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,872 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,873 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 02:39:13] 2024-05-20 00:38:51,874 | INFO     | job 6207171435 has completed (purged errors)
[2024-05-20 02:39:13] 2024-05-20 00:38:51,874 | INFO     | overall cleanup function is called
[2024-05-20 02:39:13] 2024-05-20 00:38:52,882 | INFO     | --- collectZombieJob: --- 10, [2679132]
[2024-05-20 02:39:13] 2024-05-20 00:38:52,882 | INFO     | zombie collector waiting for pid 2679132
[2024-05-20 02:39:13] 2024-05-20 00:38:52,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 02:39:13] 2024-05-20 00:38:53,887 | INFO     | collected zombie processes
[2024-05-20 02:39:13] 2024-05-20 00:38:53,888 | INFO     | will now attempt to kill all subprocesses of pid=2679132
[2024-05-20 02:39:13] 2024-05-20 00:38:54,008 | INFO     | process IDs to be killed: [2679132] (in reverse order)
[2024-05-20 02:39:13] 2024-05-20 00:38:54,099 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 02:39:13] 2024-05-20 00:38:54,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 02:39:13] 2024-05-20 00:38:54,106 | INFO     | did not find any defunct processes belonging to 2679132
[2024-05-20 02:39:13] 2024-05-20 00:38:54,112 | INFO     | did not find any defunct processes belonging to 2679132
[2024-05-20 02:39:13] 2024-05-20 00:38:54,112 | INFO     | ready for new job
[2024-05-20 02:39:13] 2024-05-20 00:38:54,112 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 02:39:13] 2024-05-20 00:38:54,115 | INFO     | *************************************
[2024-05-20 02:39:13] 2024-05-20 00:38:54,115 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-05-20 02:39:13] 2024-05-20 00:38:54,115 | INFO     | *************************************
[2024-05-20 02:39:13] 2024-05-20 00:38:54,116 | INFO     | 
[2024-05-20 02:39:13] 2024-05-20 00:38:54,118 | INFO     | architecture information:
[2024-05-20 02:39:13] 2024-05-20 00:38:54,118 | INFO     | executing command: cat /etc/os-release
[2024-05-20 02:39:13] 2024-05-20 00:38:54,129 | INFO     | cat /etc/os-release:
[2024-05-20 02:39:13] NAME="CentOS Linux"
[2024-05-20 02:39:13] VERSION="7 (Core)"
[2024-05-20 02:39:13] ID="centos"
[2024-05-20 02:39:13] ID_LIKE="rhel fedora"
[2024-05-20 02:39:13] VERSION_ID="7"
[2024-05-20 02:39:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 02:39:13] ANSI_COLOR="0;31"
[2024-05-20 02:39:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 02:39:13] HOME_URL="https://www.centos.org/"
[2024-05-20 02:39:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 02:39:13] 
[2024-05-20 02:39:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 02:39:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 02:39:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 02:39:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 02:39:13] 
[2024-05-20 02:39:13] 2024-05-20 00:38:54,129 | INFO     | *************************************
[2024-05-20 02:39:13] 2024-05-20 00:38:54,632 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-05-20 02:39:13] 2024-05-20 00:38:54,651 | INFO     | sufficient remaining disk space (1628801335296 B)
[2024-05-20 02:39:13] 2024-05-20 00:38:54,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 02:39:13] 2024-05-20 00:38:54,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 02:39:13] 2024-05-20 00:38:54,652 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 02:39:13] 2024-05-20 00:38:54,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 02:39:13] 2024-05-20 00:38:54,653 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 02:39:13] 2024-05-20 00:38:54,653 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 02:39:13] 2024-05-20 00:38:54,653 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 02:39:13] 2024-05-20 00:38:54,746 | INFO     | all data control threads have been joined
[2024-05-20 02:39:13] 2024-05-20 00:38:55,021 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-20 02:39:13] 2024-05-20 00:38:55,021 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-20 02:39:13] 2024-05-20 00:38:55,022 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 02:39:13] 2024-05-20 00:38:55,022 | INFO     | will abort loop
[2024-05-20 02:39:13] 2024-05-20 00:38:55,272 | INFO     | all payload control threads have been joined
[2024-05-20 02:39:13] 2024-05-20 00:38:55,657 | INFO     | [job] retrieve thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:55,703 | INFO     | [data] copytool_in thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:55,751 | INFO     | [data] control thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,027 | INFO     | [job] job monitor thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,051 | INFO     | all job control threads have been joined
[2024-05-20 02:39:13] 2024-05-20 00:38:56,196 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,277 | INFO     | [payload] control thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,321 | INFO     | [payload] validate_post thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,492 | INFO     | [job] validate thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,523 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,658 | INFO     | [data] copytool_out thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,699 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:56,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 02:39:13] 2024-05-20 00:38:57,054 | INFO     | [job] control thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:57,245 | INFO     | [payload] failed_post thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:38:57,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 02:39:13] 2024-05-20 00:38:57,865 | INFO     | [job] queue monitor thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:39:01,566 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:39:05,438 | INFO     | job.realtimelogging is not enabled
[2024-05-20 02:39:13] 2024-05-20 00:39:06,444 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 02:39:13] 2024-05-20 00:39:07,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47429067801664)>', '<ExcThread(monitor, started 47429234833152)>']
[2024-05-20 02:39:13] 2024-05-20 00:39:07,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 02:39:13] 2024-05-20 00:39:07,708 | INFO     | [monitor] control thread has ended
[2024-05-20 02:39:13] 2024-05-20 00:39:12,544 | INFO     | all workflow threads have been joined
[2024-05-20 02:39:13] 2024-05-20 00:39:12,544 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 02:39:13] 2024-05-20 00:39:12,545 | INFO     | traces error code: 0
[2024-05-20 02:39:13] 2024-05-20 00:39:12,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 02:39:13] 2024-05-20 00:39:12,633 [wrapper] ==== pilot stdout END ====
[2024-05-20 02:39:13] 2024-05-20 00:39:12,636 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 02:39:13] 2024-05-20 00:39:12,638 [wrapper] pilotpid: 2672309
[2024-05-20 02:39:13] 2024-05-20 00:39:12,641 [wrapper] Pilot exit status: 0
[2024-05-20 02:39:13] 2024-05-20 00:39:12,650 [wrapper] pandaids: 6207171435
[2024-05-20 02:39:13] 2024-05-20 00:39:12,713 [wrapper] cleanup: SIGTERM to supervisor_pilot 3649407 2672310
[2024-05-20 02:39:13] 2024-05-20 00:39:12,716 [wrapper] Test setup, not cleaning
[2024-05-20 02:39:13] 2024-05-20 00:39:12,719 [wrapper] ==== wrapper stdout END ====
[2024-05-20 02:39:13] 2024-05-20 00:39:12,721 [wrapper] ==== wrapper stderr END ====
[2024-05-20 02:39:13] 2024-05-20 00:39:12,726 [wrapper] apfmon messages muted
[2024-05-20 02:39:13]  *** Error codes and diagnostics ***
[2024-05-20 02:39:13]     "exeErrorCode": 0,
[2024-05-20 02:39:13]     "exeErrorDiag": "",
[2024-05-20 02:39:13]     "pilotErrorCode": 0,
[2024-05-20 02:39:13]     "pilotErrorDiag": "",
[2024-05-20 02:39:13]  *** Listing of results directory ***
[2024-05-20 02:39:13] total 871756
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc      5633 May 16 06:52 queuedata.json
[2024-05-20 02:39:13] -rwx------ 1 boinc boinc     32251 May 16 06:54 runpilot2-wrapper.sh
[2024-05-20 02:39:13] -rw------- 1 boinc boinc    468593 May 16 06:54 pilot3.tar.gz
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc       100 May 19 16:49 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 02:39:13] -rwxr-xr-x 1 boinc boinc      7986 May 19 16:49 run_atlas
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc       105 May 19 16:49 job.xml
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc      6457 May 19 16:50 init_data.xml
[2024-05-20 02:39:13] -rw-r--r-- 2 boinc boinc 539763719 May 19 16:50 EVNT.38776210._000046.pool.root.1
[2024-05-20 02:39:13] -rw-r--r-- 2 boinc boinc     17537 May 19 16:50 start_atlas.sh
[2024-05-20 02:39:13] drwxrwx--x 2 boinc boinc      4096 May 19 16:50 shared
[2024-05-20 02:39:13] -rw-r--r-- 2 boinc boinc    481392 May 19 16:50 input.tar.gz
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc         0 May 19 16:50 boinc_lockfile
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc      2643 May 19 16:50 pandaJob.out
[2024-05-20 02:39:13] -rw------- 1 boinc boinc       424 May 19 16:50 setup.sh.local
[2024-05-20 02:39:13] -rw------- 1 boinc boinc   1014069 May 19 16:50 agis_schedconf.cvmfs.json
[2024-05-20 02:39:13] -rw------- 1 boinc boinc   1324701 May 19 16:50 cric_ddmendpoints.json
[2024-05-20 02:39:13] drwx------ 6 boinc boinc      4096 May 19 16:50 pilot3
[2024-05-20 02:39:13] -rw------- 1 boinc boinc 341737998 May 20 02:37 HITS.38921013._001008.pool.root.1
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc       532 May 20 02:38 boinc_task_state.xml
[2024-05-20 02:39:13] -rw------- 1 boinc boinc        95 May 20 02:38 pilot_heartbeat.json
[2024-05-20 02:39:13] -rw------- 1 boinc boinc      1047 May 20 02:38 memory_monitor_summary.json
[2024-05-20 02:39:13] -rw------- 1 boinc boinc         0 May 20 02:38 agis_ddmendpoints.agis.ALL.json
[2024-05-20 02:39:13] -rw------- 1 boinc boinc    516413 May 20 02:38 log.38921013._001008.job.log.tgz.1
[2024-05-20 02:39:13] -rw------- 1 boinc boinc      7756 May 20 02:38 heartbeat.json
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc      8192 May 20 02:39 boinc_mmap_file
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc        29 May 20 02:39 wrapper_checkpoint.txt
[2024-05-20 02:39:13] -rw------- 1 boinc boinc      4603 May 20 02:39 pilotlog.txt
[2024-05-20 02:39:13] -rw------- 1 boinc boinc   3301825 May 20 02:39 log.38921013._001008.job.log.1
[2024-05-20 02:39:13] -rw------- 1 boinc boinc       357 May 20 02:39 output.list
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc       620 May 20 02:39 runtime_log
[2024-05-20 02:39:13] -rw------- 1 boinc boinc   3840000 May 20 02:39 result.tar.gz
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc     11410 May 20 02:39 runtime_log.err
[2024-05-20 02:39:13] -rw------- 1 boinc boinc       662 May 20 02:39 m4QLDmuJiR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDm08JKDmDiPnnm.diag
[2024-05-20 02:39:13] -rw-r--r-- 1 boinc boinc     21310 May 20 02:39 stderr.txt
[2024-05-20 02:39:13] HITS file was successfully produced:
[2024-05-20 02:39:13] -rw------- 1 boinc boinc 341737998 May 20 02:37 shared/HITS.pool.root.1
[2024-05-20 02:39:13]  *** Contents of shared directory: ***
[2024-05-20 02:39:13] total 865100
[2024-05-20 02:39:13] -rw-r--r-- 2 boinc boinc 539763719 May 19 16:50 ATLAS.root_0
[2024-05-20 02:39:13] -rw-r--r-- 2 boinc boinc     17537 May 19 16:50 start_atlas.sh
[2024-05-20 02:39:13] -rw-r--r-- 2 boinc boinc    481392 May 19 16:50 input.tar.gz
[2024-05-20 02:39:13] -rw------- 1 boinc boinc 341737998 May 20 02:37 HITS.pool.root.1
[2024-05-20 02:39:13] -rw------- 1 boinc boinc   3840000 May 20 02:39 result.tar.gz
02:39:15 (2667602): run_atlas exited; CPU time 137415.216571
02:39:15 (2667602): called boinc_finish(0)

</stderr_txt>
]]>

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