Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:35:00 (4024319): wrapper (7.7.26015): starting
03:35:00 (4024319): wrapper: running run_atlas (--nthreads 4)
[2024-05-21 03:35:00] Arguments: --nthreads 4
[2024-05-21 03:35:00] Threads: 4
[2024-05-21 03:35:00] Checking for CVMFS
[2024-05-21 03:35:00] No cvmfs_config command found, will try listing directly
[2024-05-21 03:35:00] CVMFS is ok
[2024-05-21 03:35:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-21 03:35:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-21 03:35:00] Further information can be found at the LHC@home message board.
[2024-05-21 03:35:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-21 03:35:00] Checking for apptainer binary...
[2024-05-21 03:35:00] which: no apptainer in ((null))
[2024-05-21 03:35:00] apptainer is not installed, using version from CVMFS
[2024-05-21 03:35:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-21 03:35:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2024-05-21 03:35:01] apptainer works
[2024-05-21 03:35:01] Set ATHENA_PROC_NUMBER=4
[2024-05-21 03:35:01] Set ATHENA_CORE_NUMBER=4
[2024-05-21 03:35:01] Starting ATLAS job with PandaID=6207170759
[2024-05-21 03:35:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-21 12:12:41]  *** The last 200 lines of the pilot log: ***
[2024-05-21 12:12:41] 2024-05-21 10:10:58,708 | WARNING  | GPU info not found in prmon json
[2024-05-21 12:12:41] 2024-05-21 10:10:58,708 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-21 12:12:41] 2024-05-21 10:10:58,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-21 12:12:41] 2024-05-21 10:10:58,713 | INFO     | fitting pss+swap vs Time
[2024-05-21 12:12:41] 2024-05-21 10:10:58,713 | INFO     | model: linear, x: [1716255338.0, 1716255399.0, 1716255460.0, 1716255521.0, 1716255582.0, 1716255643.0, 1716255704.0, 1716255765.0, 1716255826.0, 1716255887.0, 1716
[2024-05-21 12:12:41] 2024-05-21 10:10:58,714 | INFO     | sum of square deviations: 40411094438.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,717 | INFO     | sum of deviations: 168399755957.00003
[2024-05-21 12:12:41] 2024-05-21 10:10:58,717 | INFO     | mean x: 1716270771.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,717 | INFO     | mean y: 2336848.3905325443
[2024-05-21 12:12:41] 2024-05-21 10:10:58,717 | INFO     | -- intersect: -7149649085.471155
[2024-05-21 12:12:41] 2024-05-21 10:10:58,717 | INFO     | intersect: -7149649085.471155
[2024-05-21 12:12:41] 2024-05-21 10:10:58,718 | INFO     | chi2: 3.4375563444911426
[2024-05-21 12:12:41] 2024-05-21 10:10:58,718 | INFO     | model: linear, x: [1716255338.0, 1716255399.0, 1716255460.0, 1716255521.0, 1716255582.0, 1716255643.0, 1716255704.0, 1716255765.0, 1716255826.0, 1716255887.0, 1716
[2024-05-21 12:12:41] 2024-05-21 10:10:58,718 | INFO     | sum of square deviations: 39227248985.5
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | sum of deviations: 166050789184.9999
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | mean x: 1716270618.5
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | mean y: 2336545.792828685
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | -- intersect: -7262717671.042418
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | intersect: -7262717671.042418
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | chi2: 3.438353349901302
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | current chi2=3.438353349901302 (change=-0.023185231899881715 %)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,722 | INFO     | right removable region: 501
[2024-05-21 12:12:41] 2024-05-21 10:10:58,723 | INFO     | model: linear, x: [1716255643.0, 1716255704.0, 1716255765.0, 1716255826.0, 1716255887.0, 1716255948.0, 1716256009.0, 1716256070.0, 1716256131.0, 1716256192.0, 1716
[2024-05-21 12:12:41] 2024-05-21 10:10:58,723 | INFO     | sum of square deviations: 39227248985.5
[2024-05-21 12:12:41] 2024-05-21 10:10:58,726 | INFO     | sum of deviations: 58260867315.5
[2024-05-21 12:12:41] 2024-05-21 10:10:58,726 | INFO     | mean x: 1716270923.5
[2024-05-21 12:12:41] 2024-05-21 10:10:58,727 | INFO     | mean y: 2351015.56374502
[2024-05-21 12:12:41] 2024-05-21 10:10:58,727 | INFO     | -- intersect: -2546678935.2351265
[2024-05-21 12:12:41] 2024-05-21 10:10:58,727 | INFO     | intersect: -2546678935.2351265
[2024-05-21 12:12:41] 2024-05-21 10:10:58,727 | INFO     | chi2: 1.3105827054274588
[2024-05-21 12:12:41] 2024-05-21 10:10:58,727 | INFO     | current chi2=1.3105827054274588 (change=61.874582578763146 %)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,727 | INFO     | model: linear, x: [1716255948.0, 1716256009.0, 1716256070.0, 1716256131.0, 1716256192.0, 1716256253.0, 1716256314.0, 1716256375.0, 1716256436.0, 1716256497.0, 1716
[2024-05-21 12:12:41] 2024-05-21 10:10:58,728 | INFO     | sum of square deviations: 38066752808.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,731 | INFO     | sum of deviations: -25105653978.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,731 | INFO     | mean x: 1716271076.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,731 | INFO     | mean y: 2361970.4788732394
[2024-05-21 12:12:41] 2024-05-21 10:10:58,731 | INFO     | -- intersect: 1134271171.7662094
[2024-05-21 12:12:41] 2024-05-21 10:10:58,731 | INFO     | intersect: 1134271171.7662094
[2024-05-21 12:12:41] 2024-05-21 10:10:58,732 | INFO     | chi2: 0.21147592333521958
[2024-05-21 12:12:41] 2024-05-21 10:10:58,732 | INFO     | current chi2=0.21147592333521958 (change=83.86397726298055 %)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,732 | INFO     | model: linear, x: [1716256253.0, 1716256314.0, 1716256375.0, 1716256436.0, 1716256497.0, 1716256558.0, 1716256619.0, 1716256680.0, 1716256741.0, 1716256802.0, 1716
[2024-05-21 12:12:41] 2024-05-21 10:10:58,732 | INFO     | sum of square deviations: 36929373343.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,735 | INFO     | sum of deviations: -28508354483.499992
[2024-05-21 12:12:41] 2024-05-21 10:10:58,735 | INFO     | mean x: 1716271228.5
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | mean y: 2362419.587398374
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | -- intersect: 1327271675.8985233
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | intersect: 1327271675.8985233
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | chi2: 0.18199994818636991
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | current chi2=0.18199994818636991 (change=13.938217970149744 %)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | left removable region: 30
[2024-05-21 12:12:41] 2024-05-21 10:10:58,736 | INFO     | model: linear, x: [1716257168.0, 1716257229.0, 1716257290.0, 1716257351.0, 1716257412.0, 1716257473.0, 1716257534.0, 1716257595.0, 1716257656.0, 1716257717.0, 1716
[2024-05-21 12:12:41] 2024-05-21 10:10:58,737 | INFO     | sum of square deviations: 32399565620.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | sum of deviations: 19866437727.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | mean x: 1716271503.0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | mean y: 2355362.297239915
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | -- intersect: -1050010627.3235245
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | intersect: -1050010627.3235245
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | chi2: 0.05155097322051249
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | -- intersect: -1050010627.3235245
[2024-05-21 12:12:41] 2024-05-21 10:10:58,740 | INFO     | current memory leak: 0.61 B/s (using 471 data points, chi2=0.05)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | ..............................
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . Timing measurements:
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . get job = 0 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . initial setup = 1 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . payload setup = 6 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . stage-in = 0 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . payload execution = 30913 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . stage-out = 1 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | . log creation = 0 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,741 | INFO     | ..............................
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | 
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | job summary report
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | --------------------------------------------------
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | PanDA job id: 6207170759
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | task id: 38921013
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | errors: (none)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | pilot state: finished 
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | transexitcode: 0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | exeerrorcode: 0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | exeerrordiag: 
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | exitcode: 0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | exitmsg: OK
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | cpuconsumptiontime: 120894 s
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | nevents: 400
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | neventsw: 0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | pid: 4036113
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | pgrp: 4036113
[2024-05-21 12:12:41] 2024-05-21 10:10:58,825 | INFO     | corecount: 4
[2024-05-21 12:12:41] 2024-05-21 10:10:58,826 | INFO     | event service: False
[2024-05-21 12:12:41] 2024-05-21 10:10:58,826 | INFO     | sizes: {0: 2391997, 1: 2392196, 5: 2392402, 11: 2392458, 30922: 2430671, 30925: 2439653, 30928: 2439837, 30932: 2440007}
[2024-05-21 12:12:41] 2024-05-21 10:10:58,826 | INFO     | --------------------------------------------------
[2024-05-21 12:12:41] 2024-05-21 10:10:58,826 | INFO     | 
[2024-05-21 12:12:41] 2024-05-21 10:10:58,826 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2024-05-21 12:12:41] 2024-05-21 10:10:58,843 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,844 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,845 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-21 12:12:41] 2024-05-21 10:10:58,845 | INFO     | job 6207170759 has completed (purged errors)
[2024-05-21 12:12:41] 2024-05-21 10:10:58,845 | INFO     | overall cleanup function is called
[2024-05-21 12:12:41] 2024-05-21 10:10:59,852 | INFO     | --- collectZombieJob: --- 10, [4036113]
[2024-05-21 12:12:41] 2024-05-21 10:10:59,852 | INFO     | zombie collector waiting for pid 4036113
[2024-05-21 12:12:41] 2024-05-21 10:10:59,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-21 12:12:41] 2024-05-21 10:11:00,856 | INFO     | collected zombie processes
[2024-05-21 12:12:41] 2024-05-21 10:11:00,857 | INFO     | will now attempt to kill all subprocesses of pid=4036113
[2024-05-21 12:12:41] 2024-05-21 10:11:01,044 | INFO     | process IDs to be killed: [4036113] (in reverse order)
[2024-05-21 12:12:41] 2024-05-21 10:11:01,183 | WARNING  | found no corresponding commands to process id(s)
[2024-05-21 12:12:41] 2024-05-21 10:11:01,184 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-21 12:12:41] 2024-05-21 10:11:01,200 | INFO     | did not find any defunct processes belonging to 4036113
[2024-05-21 12:12:41] 2024-05-21 10:11:01,209 | INFO     | did not find any defunct processes belonging to 4036113
[2024-05-21 12:12:41] 2024-05-21 10:11:01,210 | INFO     | ready for new job
[2024-05-21 12:12:41] 2024-05-21 10:11:01,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-21 12:12:41] 2024-05-21 10:11:01,212 | INFO     | *************************************
[2024-05-21 12:12:41] 2024-05-21 10:11:01,212 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-21 12:12:41] 2024-05-21 10:11:01,212 | INFO     | *************************************
[2024-05-21 12:12:41] 2024-05-21 10:11:01,212 | INFO     | 
[2024-05-21 12:12:41] 2024-05-21 10:11:01,215 | INFO     | architecture information:
[2024-05-21 12:12:41] 2024-05-21 10:11:01,215 | INFO     | executing command: cat /etc/os-release
[2024-05-21 12:12:41] 2024-05-21 10:11:01,230 | INFO     | cat /etc/os-release:
[2024-05-21 12:12:41] NAME="CentOS Linux"
[2024-05-21 12:12:41] VERSION="7 (Core)"
[2024-05-21 12:12:41] ID="centos"
[2024-05-21 12:12:41] ID_LIKE="rhel fedora"
[2024-05-21 12:12:41] VERSION_ID="7"
[2024-05-21 12:12:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-21 12:12:41] ANSI_COLOR="0;31"
[2024-05-21 12:12:41] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-21 12:12:41] HOME_URL="https://www.centos.org/"
[2024-05-21 12:12:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-21 12:12:41] 
[2024-05-21 12:12:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-21 12:12:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-21 12:12:41] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-21 12:12:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-21 12:12:41] 
[2024-05-21 12:12:41] 2024-05-21 10:11:01,231 | INFO     | *************************************
[2024-05-21 12:12:41] 2024-05-21 10:11:01,734 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2024-05-21 12:12:41] 2024-05-21 10:11:01,751 | INFO     | sufficient remaining disk space (583547224064 B)
[2024-05-21 12:12:41] 2024-05-21 10:11:01,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-21 12:12:41] 2024-05-21 10:11:01,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-21 12:12:41] 2024-05-21 10:11:01,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-21 12:12:41] 2024-05-21 10:11:02,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-21 12:12:41] 2024-05-21 10:11:02,150 | INFO     | aborting loop
[2024-05-21 12:12:41] 2024-05-21 10:11:02,214 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-21 12:12:41] 2024-05-21 10:11:02,268 | INFO     | all data control threads have been joined
[2024-05-21 12:12:41] 2024-05-21 10:11:02,311 | INFO     | all job control threads have been joined
[2024-05-21 12:12:41] 2024-05-21 10:11:02,468 | INFO     | found 0 job(s) in 20 queues
[2024-05-21 12:12:41] 2024-05-21 10:11:02,468 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-21 12:12:41] 2024-05-21 10:11:02,468 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-21 12:12:41] 2024-05-21 10:11:02,674 | INFO     | all payload control threads have been joined
[2024-05-21 12:12:41] 2024-05-21 10:11:02,757 | INFO     | [job] retrieve thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:02,869 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:02,963 | INFO     | [payload] validate_pre thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,147 | INFO     | [job] validate thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,156 | INFO     | [job] job monitor thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,162 | INFO     | [payload] failed_post thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,274 | INFO     | [data] control thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,317 | INFO     | [job] control thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,367 | INFO     | [payload] validate_post thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,680 | INFO     | [payload] control thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,695 | INFO     | [data] copytool_in thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-21 12:12:41] 2024-05-21 10:11:03,870 | INFO     | [job] create_data_payload thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:03,991 | INFO     | [payload] execute_payloads thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:04,220 | INFO     | [data] copytool_out thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:04,814 | INFO     | [job] queue monitor thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:05,758 | INFO     | [data] queue_monitor thread has finished
[2024-05-21 12:12:41] 2024-05-21 10:11:06,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47085570311232)>', '<ExcThread(monitor, started 47085743654656)>']
[2024-05-21 12:12:41] 2024-05-21 10:11:07,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-21 12:12:41] 2024-05-21 10:11:07,491 | INFO     | [monitor] control thread has ended
[2024-05-21 12:12:41] 2024-05-21 10:11:11,989 | INFO     | all workflow threads have been joined
[2024-05-21 12:12:41] 2024-05-21 10:11:11,989 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-21 12:12:41] 2024-05-21 10:11:11,990 | INFO     | traces error code: 0
[2024-05-21 12:12:41] 2024-05-21 10:11:11,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-21 12:12:41] 2024-05-21 10:11:12,098 [wrapper] ==== pilot stdout END ====
[2024-05-21 12:12:41] 2024-05-21 10:11:12,100 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-21 12:12:41] 2024-05-21 10:11:12,102 [wrapper] pilotpid: 4029001
[2024-05-21 12:12:41] 2024-05-21 10:11:12,104 [wrapper] Pilot exit status: 0
[2024-05-21 12:12:41] 2024-05-21 10:11:12,112 [wrapper] pandaids: 6207170759
[2024-05-21 12:12:41] 2024-05-21 10:11:12,185 [wrapper] cleanup: SIGTERM to supervisor_pilot 1005490 4029002
[2024-05-21 12:12:41] 2024-05-21 10:11:12,187 [wrapper] Test setup, not cleaning
[2024-05-21 12:12:41] 2024-05-21 10:11:12,190 [wrapper] ==== wrapper stdout END ====
[2024-05-21 12:12:41] 2024-05-21 10:11:12,193 [wrapper] ==== wrapper stderr END ====
[2024-05-21 12:12:41] 2024-05-21 10:11:12,198 [wrapper] apfmon messages muted
[2024-05-21 12:12:41]  *** Error codes and diagnostics ***
[2024-05-21 12:12:41]     "exeErrorCode": 0,
[2024-05-21 12:12:41]     "exeErrorDiag": "",
[2024-05-21 12:12:41]     "pilotErrorCode": 0,
[2024-05-21 12:12:41]     "pilotErrorDiag": "",
[2024-05-21 12:12:41]  *** Listing of results directory ***
[2024-05-21 12:12:41] total 877992
[2024-05-21 12:12:41] -rwx------ 1 boinc boinc     32251 May 16 06:06 runpilot2-wrapper.sh
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc      5633 May 16 06:06 queuedata.json
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc    467845 May 16 06:06 pilot3.tar.gz
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc       100 May 21 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-21 12:12:41] -rwxr-xr-x 1 boinc boinc      7986 May 21 02:47 run_atlas
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc       105 May 21 02:47 job.xml
[2024-05-21 12:12:41] -rw-r--r-- 2 boinc boinc 542052821 May 21 03:35 EVNT.38776210._000032.pool.root.1
[2024-05-21 12:12:41] -rw-r--r-- 2 boinc boinc     17537 May 21 03:35 start_atlas.sh
[2024-05-21 12:12:41] drwxrwx--x 2 boinc boinc      4096 May 21 03:35 shared
[2024-05-21 12:12:41] -rw-r--r-- 2 boinc boinc    479990 May 21 03:35 input.tar.gz
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc         0 May 21 03:35 boinc_lockfile
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc      2641 May 21 03:35 pandaJob.out
[2024-05-21 12:12:41] -rw------- 1 boinc boinc       424 May 21 03:35 setup.sh.local
[2024-05-21 12:12:41] -rw------- 1 boinc boinc   1014363 May 21 03:35 agis_schedconf.cvmfs.json
[2024-05-21 12:12:41] -rw------- 1 boinc boinc   1324701 May 21 03:35 cric_ddmendpoints.json
[2024-05-21 12:12:41] drwx------ 4 boinc boinc      4096 May 21 03:35 pilot3
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc      6666 May 21 03:48 init_data.xml
[2024-05-21 12:12:41] -rw------- 1 boinc boinc 345177781 May 21 12:10 HITS.38921013._000692.pool.root.1
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc       532 May 21 12:10 boinc_task_state.xml
[2024-05-21 12:12:41] -rw------- 1 boinc boinc        95 May 21 12:10 pilot_heartbeat.json
[2024-05-21 12:12:41] -rw------- 1 boinc boinc      1059 May 21 12:10 memory_monitor_summary.json
[2024-05-21 12:12:41] -rw------- 1 boinc boinc         0 May 21 12:10 agis_ddmendpoints.agis.ALL.json
[2024-05-21 12:12:41] -rw------- 1 boinc boinc    543292 May 21 12:10 log.38921013._000692.job.log.tgz.1
[2024-05-21 12:12:41] -rw------- 1 boinc boinc      7777 May 21 12:10 heartbeat.json
[2024-05-21 12:12:41] -rw------- 1 boinc boinc      4221 May 21 12:11 pilotlog.txt
[2024-05-21 12:12:41] -rw------- 1 boinc boinc   3609356 May 21 12:11 log.38921013._000692.job.log.1
[2024-05-21 12:12:41] -rw------- 1 boinc boinc       357 May 21 12:11 output.list
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc       620 May 21 12:11 runtime_log
[2024-05-21 12:12:41] -rw------- 1 boinc boinc   4167680 May 21 12:11 result.tar.gz
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc     11410 May 21 12:11 runtime_log.err
[2024-05-21 12:12:41] -rw------- 1 boinc boinc       662 May 21 12:11 j7lKDmbZhR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmFFPKDmkR3RWm.diag
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc        28 May 21 12:12 wrapper_checkpoint.txt
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc      8192 May 21 12:12 boinc_mmap_file
[2024-05-21 12:12:41] -rw-r--r-- 1 boinc boinc     21307 May 21 12:12 stderr.txt
[2024-05-21 12:12:41] HITS file was successfully produced:
[2024-05-21 12:12:41] -rw------- 1 boinc boinc 345177781 May 21 12:10 shared/HITS.pool.root.1
[2024-05-21 12:12:41]  *** Contents of shared directory: ***
[2024-05-21 12:12:41] total 871012
[2024-05-21 12:12:41] -rw-r--r-- 2 boinc boinc 542052821 May 21 03:35 ATLAS.root_0
[2024-05-21 12:12:41] -rw-r--r-- 2 boinc boinc     17537 May 21 03:35 start_atlas.sh
[2024-05-21 12:12:41] -rw-r--r-- 2 boinc boinc    479990 May 21 03:35 input.tar.gz
[2024-05-21 12:12:41] -rw------- 1 boinc boinc 345177781 May 21 12:10 HITS.pool.root.1
[2024-05-21 12:12:41] -rw------- 1 boinc boinc   4167680 May 21 12:11 result.tar.gz
12:12:43 (4024319): run_atlas exited; CPU time 120188.187059
12:12:43 (4024319): called boinc_finish(0)

</stderr_txt>
]]>

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