Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:25:12 (548799): wrapper (7.7.26015): starting
00:25:12 (548799): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 00:25:12] Arguments: --nthreads 4
[2024-05-20 00:25:12] Threads: 4
[2024-05-20 00:25:12] Checking for CVMFS
[2024-05-20 00:25:12] No cvmfs_config command found, will try listing directly
[2024-05-20 00:25:12] CVMFS is ok
[2024-05-20 00:25:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 00:25:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 00:25:12] Further information can be found at the LHC@home message board.
[2024-05-20 00:25:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 00:25:12] Checking for apptainer binary...
[2024-05-20 00:25:12] which: no apptainer in ((null))
[2024-05-20 00:25:12] apptainer is not installed, using version from CVMFS
[2024-05-20 00:25:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 00:25:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-20 00:25:13] apptainer works
[2024-05-20 00:25:13] Set ATHENA_PROC_NUMBER=4
[2024-05-20 00:25:13] Set ATHENA_CORE_NUMBER=4
[2024-05-20 00:25:13] Starting ATLAS job with PandaID=6207133361
[2024-05-20 00:25:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 03:04:07]  *** The last 200 lines of the pilot log: ***
[2024-05-20 03:04:07] 2024-05-20 01:03:46,879 | INFO     | fitting pss+swap vs Time
[2024-05-20 03:04:07] 2024-05-20 01:03:46,879 | INFO     | model: linear, x: [1716157547.0, 1716157608.0, 1716157669.0, 1716157730.0, 1716157791.0, 1716157852.0, 1716157913.0, 1716157974.0, 1716158035.0, 1716158096.0, 1716
[2024-05-20 03:04:07] 2024-05-20 01:03:46,879 | INFO     | sum of square deviations: 1177156955.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,879 | INFO     | sum of deviations: 56218189473.49999
[2024-05-20 03:04:07] 2024-05-20 01:03:46,879 | INFO     | mean x: 1716162274.5
[2024-05-20 03:04:07] 2024-05-20 01:03:46,879 | INFO     | mean y: 2241817.3012820515
[2024-05-20 03:04:07] 2024-05-20 01:03:46,880 | INFO     | -- intersect: -81957547406.48468
[2024-05-20 03:04:07] 2024-05-20 01:03:46,880 | INFO     | intersect: -81957547406.48468
[2024-05-20 03:04:07] 2024-05-20 01:03:46,880 | INFO     | chi2: 5.006007201003674
[2024-05-20 03:04:07] 2024-05-20 01:03:46,880 | INFO     | model: linear, x: [1716157547.0, 1716157608.0, 1716157669.0, 1716157730.0, 1716157791.0, 1716157852.0, 1716157913.0, 1716157974.0, 1716158035.0, 1716158096.0, 1716
[2024-05-20 03:04:07] 2024-05-20 01:03:46,880 | INFO     | sum of square deviations: 1067554900.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,880 | INFO     | sum of deviations: 63945171134.00001
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | mean x: 1716162122.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | mean y: 2252210.490066225
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | -- intersect: -102793660753.77866
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | intersect: -102793660753.77866
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | chi2: 4.212149760787601
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | current chi2=4.212149760787601 (change=15.858096249979607 %)
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | right removable region: 150
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | model: linear, x: [1716157852.0, 1716157913.0, 1716157974.0, 1716158035.0, 1716158096.0, 1716158157.0, 1716158218.0, 1716158279.0, 1716158340.0, 1716158401.0, 1716
[2024-05-20 03:04:07] 2024-05-20 01:03:46,881 | INFO     | sum of square deviations: 1067554900.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | sum of deviations: 20754393865.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | mean x: 1716162427.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | mean y: 2290988.105960265
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | -- intersect: -33361717688.42422
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | intersect: -33361717688.42422
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | chi2: 2.4702055068899345
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | current chi2=2.4702055068899345 (change=50.65517471899214 %)
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | model: linear, x: [1716158157.0, 1716158218.0, 1716158279.0, 1716158340.0, 1716158401.0, 1716158462.0, 1716158523.0, 1716158584.0, 1716158645.0, 1716158706.0, 1716
[2024-05-20 03:04:07] 2024-05-20 01:03:46,882 | INFO     | sum of square deviations: 964976232.5
[2024-05-20 03:04:07] 2024-05-20 01:03:46,883 | INFO     | sum of deviations: -8405901717.499999
[2024-05-20 03:04:07] 2024-05-20 01:03:46,883 | INFO     | mean x: 1716162579.5
[2024-05-20 03:04:07] 2024-05-20 01:03:46,883 | INFO     | mean y: 2334356.006849315
[2024-05-20 03:04:07] 2024-05-20 01:03:46,883 | INFO     | -- intersect: 14951815481.728025
[2024-05-20 03:04:07] 2024-05-20 01:03:46,883 | INFO     | intersect: 14951815481.728025
[2024-05-20 03:04:07] 2024-05-20 01:03:46,883 | INFO     | chi2: 0.8948762350853776
[2024-05-20 03:04:07] 2024-05-20 01:03:46,884 | INFO     | current chi2=0.8948762350853776 (change=63.77320702308471 %)
[2024-05-20 03:04:07] 2024-05-20 01:03:46,884 | INFO     | model: linear, x: [1716158462.0, 1716158523.0, 1716158584.0, 1716158645.0, 1716158706.0, 1716158767.0, 1716158828.0, 1716158889.0, 1716158950.0, 1716159011.0, 1716
[2024-05-20 03:04:07] 2024-05-20 01:03:46,884 | INFO     | sum of square deviations: 869188390.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | sum of deviations: -11648036376.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | mean x: 1716162732.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | mean y: 2339417.063829787
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | -- intersect: 23000720618.94751
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | intersect: 23000720618.94751
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | chi2: 0.8450856867905424
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | current chi2=0.8450856867905424 (change=5.563959164708942 %)
[2024-05-20 03:04:07] 2024-05-20 01:03:46,885 | INFO     | left removable region: 30
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | model: linear, x: [1716159377.0, 1716159438.0, 1716159499.0, 1716159560.0, 1716159621.0, 1716159682.0, 1716159743.0, 1716159804.0, 1716159865.0, 1716159926.0, 1716
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | sum of square deviations: 535786790.0
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | sum of deviations: -2126871719.4999998
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | mean x: 1716163006.5
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | mean y: 2353662.7083333335
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | -- intersect: 6814874300.958755
[2024-05-20 03:04:07] 2024-05-20 01:03:46,886 | INFO     | intersect: 6814874300.958755
[2024-05-20 03:04:07] 2024-05-20 01:03:46,887 | INFO     | chi2: 0.0031047308084948635
[2024-05-20 03:04:07] 2024-05-20 01:03:46,887 | INFO     | -- intersect: 6814874300.958755
[2024-05-20 03:04:07] 2024-05-20 01:03:46,887 | INFO     | current memory leak: -3.97 B/s (using 120 data points, chi2=0.00)
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | ..............................
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . Timing measurements:
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . get job = 0 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . initial setup = 1 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . payload setup = 5 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . stage-in = 0 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . payload execution = 9472 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . stage-out = 0 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | . log creation = 0 s
[2024-05-20 03:04:07] 2024-05-20 01:03:46,888 | INFO     | ..............................
[2024-05-20 03:04:07] 2024-05-20 01:03:47,187 | INFO     | 
[2024-05-20 03:04:07] 2024-05-20 01:03:47,187 | INFO     | job summary report
[2024-05-20 03:04:07] 2024-05-20 01:03:47,187 | INFO     | --------------------------------------------------
[2024-05-20 03:04:07] 2024-05-20 01:03:47,187 | INFO     | PanDA job id: 6207133361
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | task id: 38776125
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | errors: (none)
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | pilot state: finished 
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | transexitcode: 0
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | exeerrorcode: 0
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | exeerrordiag: 
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | exitcode: 0
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | exitmsg: OK
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | cpuconsumptiontime: 35267 s
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | nevents: 400
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | neventsw: 0
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | pid: 560918
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | pgrp: 560918
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | corecount: 4
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | event service: False
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | sizes: {0: 2391349, 1: 2392284, 5: 2392490, 12: 2392546, 9482: 2420966, 9484: 2429948, 9486: 2430132, 9490: 2430302}
[2024-05-20 03:04:07] 2024-05-20 01:03:47,188 | INFO     | --------------------------------------------------
[2024-05-20 03:04:07] 2024-05-20 01:03:47,189 | INFO     | 
[2024-05-20 03:04:07] 2024-05-20 01:03:47,189 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2024-05-20 03:04:07] 2024-05-20 01:03:47,212 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,213 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | job 6207133361 has completed (purged errors)
[2024-05-20 03:04:07] 2024-05-20 01:03:47,214 | INFO     | overall cleanup function is called
[2024-05-20 03:04:07] 2024-05-20 01:03:48,221 | INFO     | --- collectZombieJob: --- 10, [560918]
[2024-05-20 03:04:07] 2024-05-20 01:03:48,221 | INFO     | zombie collector waiting for pid 560918
[2024-05-20 03:04:07] 2024-05-20 01:03:48,222 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 03:04:07] 2024-05-20 01:03:48,290 | INFO     | 9507s have passed since pilot start
[2024-05-20 03:04:07] 2024-05-20 01:03:49,226 | INFO     | collected zombie processes
[2024-05-20 03:04:07] 2024-05-20 01:03:49,226 | INFO     | will now attempt to kill all subprocesses of pid=560918
[2024-05-20 03:04:07] 2024-05-20 01:03:49,419 | INFO     | process IDs to be killed: [560918] (in reverse order)
[2024-05-20 03:04:07] 2024-05-20 01:03:49,577 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 03:04:07] 2024-05-20 01:03:49,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 03:04:07] 2024-05-20 01:03:49,591 | INFO     | did not find any defunct processes belonging to 560918
[2024-05-20 03:04:07] 2024-05-20 01:03:49,600 | INFO     | did not find any defunct processes belonging to 560918
[2024-05-20 03:04:07] 2024-05-20 01:03:49,600 | INFO     | ready for new job
[2024-05-20 03:04:07] 2024-05-20 01:03:49,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 03:04:07] 2024-05-20 01:03:49,602 | INFO     | *************************************
[2024-05-20 03:04:07] 2024-05-20 01:03:49,602 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 03:04:07] 2024-05-20 01:03:49,602 | INFO     | *************************************
[2024-05-20 03:04:07] 2024-05-20 01:03:49,602 | INFO     | 
[2024-05-20 03:04:07] 2024-05-20 01:03:49,607 | INFO     | architecture information:
[2024-05-20 03:04:07] 2024-05-20 01:03:49,608 | INFO     | executing command: cat /etc/os-release
[2024-05-20 03:04:07] 2024-05-20 01:03:49,623 | INFO     | cat /etc/os-release:
[2024-05-20 03:04:07] NAME="CentOS Linux"
[2024-05-20 03:04:07] VERSION="7 (Core)"
[2024-05-20 03:04:07] ID="centos"
[2024-05-20 03:04:07] ID_LIKE="rhel fedora"
[2024-05-20 03:04:07] VERSION_ID="7"
[2024-05-20 03:04:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 03:04:07] ANSI_COLOR="0;31"
[2024-05-20 03:04:07] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 03:04:07] HOME_URL="https://www.centos.org/"
[2024-05-20 03:04:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 03:04:07] 
[2024-05-20 03:04:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 03:04:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 03:04:07] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 03:04:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 03:04:07] 
[2024-05-20 03:04:07] 2024-05-20 01:03:49,623 | INFO     | *************************************
[2024-05-20 03:04:07] 2024-05-20 01:03:50,126 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2024-05-20 03:04:07] 2024-05-20 01:03:50,149 | INFO     | sufficient remaining disk space (3012230643712 B)
[2024-05-20 03:04:07] 2024-05-20 01:03:50,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 03:04:07] 2024-05-20 01:03:50,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 03:04:07] 2024-05-20 01:03:50,154 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 03:04:07] 2024-05-20 01:03:50,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 03:04:07] 2024-05-20 01:03:50,155 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 03:04:07] 2024-05-20 01:03:50,155 | INFO     | aborting loop
[2024-05-20 03:04:07] 2024-05-20 01:03:50,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 03:04:07] 2024-05-20 01:03:50,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 03:04:07] 2024-05-20 01:03:50,763 | INFO     | all job control threads have been joined
[2024-05-20 03:04:07] 2024-05-20 01:03:51,130 | INFO     | all data control threads have been joined
[2024-05-20 03:04:07] 2024-05-20 01:03:51,158 | INFO     | [job] retrieve thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,160 | INFO     | [job] job monitor thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 03:04:07] 2024-05-20 01:03:51,248 | INFO     | all payload control threads have been joined
[2024-05-20 03:04:07] 2024-05-20 01:03:51,315 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,476 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,605 | INFO     | [payload] validate_post thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,769 | INFO     | [job] control thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,877 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:51,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 03:04:07] 2024-05-20 01:03:52,136 | INFO     | [data] control thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:52,253 | INFO     | [payload] control thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:52,515 | INFO     | [job] validate thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:52,524 | INFO     | [data] copytool_in thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:52,694 | INFO     | [payload] failed_post thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:52,995 | INFO     | [job] queue monitor thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:53,194 | INFO     | [data] copytool_out thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:03:53,538 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 03:04:07] 2024-05-20 01:03:57,544 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:04:00,529 | INFO     | job.realtimelogging is not enabled
[2024-05-20 03:04:07] 2024-05-20 01:04:01,534 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 03:04:07] 2024-05-20 01:04:01,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47085533340736)>', '<ExcThread(monitor, started 47085708793600)>']
[2024-05-20 03:04:07] 2024-05-20 01:04:02,215 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 03:04:07] 2024-05-20 01:04:02,215 | INFO     | [monitor] control thread has ended
[2024-05-20 03:04:07] 2024-05-20 01:04:06,712 | INFO     | all workflow threads have been joined
[2024-05-20 03:04:07] 2024-05-20 01:04:06,712 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 03:04:07] 2024-05-20 01:04:06,712 | INFO     | traces error code: 0
[2024-05-20 03:04:07] 2024-05-20 01:04:06,713 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 03:04:07] 2024-05-20 01:04:06,783 [wrapper] ==== pilot stdout END ====
[2024-05-20 03:04:07] 2024-05-20 01:04:06,785 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 03:04:07] 2024-05-20 01:04:06,787 [wrapper] pilotpid: 553399
[2024-05-20 03:04:07] 2024-05-20 01:04:06,789 [wrapper] Pilot exit status: 0
[2024-05-20 03:04:07] 2024-05-20 01:04:06,797 [wrapper] pandaids: 6207133361
[2024-05-20 03:04:07] 2024-05-20 01:04:06,935 [wrapper] cleanup: SIGTERM to supervisor_pilot 1423354 553400
[2024-05-20 03:04:07] 2024-05-20 01:04:06,938 [wrapper] Test setup, not cleaning
[2024-05-20 03:04:07] 2024-05-20 01:04:06,939 [wrapper] ==== wrapper stdout END ====
[2024-05-20 03:04:07] 2024-05-20 01:04:06,940 [wrapper] ==== wrapper stderr END ====
[2024-05-20 03:04:07] 2024-05-20 01:04:06,943 [wrapper] apfmon messages muted
[2024-05-20 03:04:07]  *** Error codes and diagnostics ***
[2024-05-20 03:04:07]     "exeErrorCode": 0,
[2024-05-20 03:04:07]     "exeErrorDiag": "",
[2024-05-20 03:04:07]     "pilotErrorCode": 0,
[2024-05-20 03:04:07]     "pilotErrorDiag": "",
[2024-05-20 03:04:07]  *** Listing of results directory ***
[2024-05-20 03:04:07] total 835580
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc    467845 May 16 04:30 pilot3.tar.gz
[2024-05-20 03:04:07] -rwx------ 1 boinc boinc     32251 May 16 04:43 runpilot2-wrapper.sh
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc      5633 May 16 04:43 queuedata.json
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc       100 May 20 00:25 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 03:04:07] -rwxr-xr-x 1 boinc boinc      7986 May 20 00:25 run_atlas
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc       105 May 20 00:25 job.xml
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc      6644 May 20 00:25 init_data.xml
[2024-05-20 03:04:07] -rw-r--r-- 2 boinc boinc 600446953 May 20 00:25 EVNT.38776119._000281.pool.root.1
[2024-05-20 03:04:07] -rw-r--r-- 2 boinc boinc     17537 May 20 00:25 start_atlas.sh
[2024-05-20 03:04:07] drwxrwx--x 2 boinc boinc      4096 May 20 00:25 shared
[2024-05-20 03:04:07] -rw-r--r-- 2 boinc boinc    480009 May 20 00:25 input.tar.gz
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc         0 May 20 00:25 boinc_lockfile
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc      2634 May 20 00:25 pandaJob.out
[2024-05-20 03:04:07] -rw------- 1 boinc boinc       424 May 20 00:25 setup.sh.local
[2024-05-20 03:04:07] -rw------- 1 boinc boinc   1013669 May 20 00:25 agis_schedconf.cvmfs.json
[2024-05-20 03:04:07] -rw------- 1 boinc boinc         0 May 20 00:25 agis_ddmendpoints.agis.ALL.json
[2024-05-20 03:04:07] -rw------- 1 boinc boinc   1324701 May 20 00:25 cric_ddmendpoints.json
[2024-05-20 03:04:07] drwx------ 4 boinc boinc      4096 May 20 00:25 pilot3
[2024-05-20 03:04:07] -rw------- 1 boinc boinc 249054550 May 20 03:03 HITS.38776125._012122.pool.root.1
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc       531 May 20 03:03 boinc_task_state.xml
[2024-05-20 03:04:07] -rw------- 1 boinc boinc      1040 May 20 03:03 memory_monitor_summary.json
[2024-05-20 03:04:07] -rw------- 1 boinc boinc    308328 May 20 03:03 log.38776125._012122.job.log.tgz.1
[2024-05-20 03:04:07] -rw------- 1 boinc boinc      7716 May 20 03:03 heartbeat.json
[2024-05-20 03:04:07] -rw------- 1 boinc boinc        95 May 20 03:03 pilot_heartbeat.json
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc        27 May 20 03:04 wrapper_checkpoint.txt
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc      8192 May 20 03:04 boinc_mmap_file
[2024-05-20 03:04:07] -rw------- 1 boinc boinc      4417 May 20 03:04 pilotlog.txt
[2024-05-20 03:04:07] -rw------- 1 boinc boinc    990819 May 20 03:04 log.38776125._012122.job.log.1
[2024-05-20 03:04:07] -rw------- 1 boinc boinc       357 May 20 03:04 output.list
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc       620 May 20 03:04 runtime_log
[2024-05-20 03:04:07] -rw------- 1 boinc boinc   1320960 May 20 03:04 result.tar.gz
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc     11409 May 20 03:04 runtime_log.err
[2024-05-20 03:04:07] -rw------- 1 boinc boinc       654 May 20 03:04 dNjKDmNGgR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmQ4JKDmvjOiCn.diag
[2024-05-20 03:04:07] -rw-r--r-- 1 boinc boinc     21311 May 20 03:04 stderr.txt
[2024-05-20 03:04:07] HITS file was successfully produced:
[2024-05-20 03:04:07] -rw------- 1 boinc boinc 249054550 May 20 03:03 shared/HITS.pool.root.1
[2024-05-20 03:04:07]  *** Contents of shared directory: ***
[2024-05-20 03:04:07] total 831388
[2024-05-20 03:04:07] -rw-r--r-- 2 boinc boinc 600446953 May 20 00:25 ATLAS.root_0
[2024-05-20 03:04:07] -rw-r--r-- 2 boinc boinc     17537 May 20 00:25 start_atlas.sh
[2024-05-20 03:04:07] -rw-r--r-- 2 boinc boinc    480009 May 20 00:25 input.tar.gz
[2024-05-20 03:04:07] -rw------- 1 boinc boinc 249054550 May 20 03:03 HITS.pool.root.1
[2024-05-20 03:04:07] -rw------- 1 boinc boinc   1320960 May 20 03:04 result.tar.gz
03:04:08 (548799): run_atlas exited; CPU time 35036.841721
03:04:08 (548799): called boinc_finish(0)

</stderr_txt>
]]>

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