Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-16 03:02:46 (20544): Detected: vboxwrapper 26206
2024-05-16 03:02:46 (20544): Detected: BOINC client v7.24.1
2024-05-16 03:02:47 (20544): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2024-05-16 03:02:47 (20544): Successfully copied 'init_data.xml' to the shared directory.
2024-05-16 03:02:48 (20544): Create VM. (boinc_f2bb4899a5dc2e84, slot#4)
2024-05-16 03:02:48 (20544): Setting Memory Size for VM. (4600MB)
2024-05-16 03:02:48 (20544): Setting CPU Count for VM. (6)
2024-05-16 03:02:49 (20544): Setting Chipset Options for VM.
2024-05-16 03:02:49 (20544): Setting Graphics Controller Options for VM.
2024-05-16 03:02:49 (20544): Setting Boot Options for VM.
2024-05-16 03:02:49 (20544): Setting Network Configuration for NAT.
2024-05-16 03:02:50 (20544): Enabling VM Network Access.
2024-05-16 03:02:50 (20544): Disabling USB Support for VM.
2024-05-16 03:02:50 (20544): Disabling COM Port Support for VM.
2024-05-16 03:02:50 (20544): Disabling LPT Port Support for VM.
2024-05-16 03:02:51 (20544): Disabling Audio Support for VM.
2024-05-16 03:02:51 (20544): Disabling Clipboard Support for VM.
2024-05-16 03:02:51 (20544): Disabling Drag and Drop Support for VM.
2024-05-16 03:02:51 (20544): Adding storage controller(s) to VM.
2024-05-16 03:02:52 (20544): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-16 03:02:52 (20544): Adding VirtualBox Guest Additions to VM.
2024-05-16 03:02:52 (20544): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-16 03:02:53 (20544): forwarding host port 18151 to guest port 80
2024-05-16 03:02:53 (20544): Enabling remote desktop for VM.
2024-05-16 03:02:53 (20544): Required extension pack not installed, remote desktop not enabled.
2024-05-16 03:02:53 (20544): Enabling shared directory for VM.
2024-05-16 03:02:54 (20544): Starting VM using VBoxManage interface. (boinc_f2bb4899a5dc2e84, slot#4)
2024-05-16 03:03:00 (20544): Successfully started VM. (PID = '6780')
2024-05-16 03:03:00 (20544): Reporting VM Process ID to BOINC.
2024-05-16 03:03:00 (20544): Guest Log: BIOS: VirtualBox 7.0.8
2024-05-16 03:03:00 (20544): Guest Log: CPUID EDX: 0x178bfbff
2024-05-16 03:03:00 (20544): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-16 03:03:00 (20544): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-16 03:03:00 (20544): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-16 03:03:00 (20544): Detected: Web Application Enabled (http://localhost:18151)
2024-05-16 03:03:00 (20544): Preference change detected
2024-05-16 03:03:00 (20544): Setting CPU throttle for VM. (90%)
2024-05-16 03:03:00 (20544): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-16 03:03:02 (20544): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-16 03:03:02 (20544): Guest Log: BIOS: Booting from Hard Disk...
2024-05-16 03:03:05 (20544): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-16 03:03:05 (20544): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-16 03:03:05 (20544): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-16 03:03:14 (20544): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-16 03:03:14 (20544): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-16 03:03:19 (20544): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000106 main     Log opened 2024-05-16T03:03:17.755319000Z
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000183 main     OS Product: Linux
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000214 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000239 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000263 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000264 main     Process ID: 1331
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000264 main     Package type: LINUX_64BITS_GENERIC
2024-05-16 03:03:19 (20544): Guest Log: 00:00:00.000855 main     5.2.32 r132073 started. Verbose level = 0
2024-05-16 03:03:19 (20544): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-16 03:03:19 (20544): Guest Log: [INFO] Mounting shared directory
2024-05-16 03:03:19 (20544): Guest Log: [INFO] Checking for init_data.xml
2024-05-16 03:03:23 (20544): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-16 03:03:23 (20544): Guest Log: [INFO] Detected branch: prod
2024-05-16 03:03:23 (20544): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-16 03:03:23 (20544): Guest Log: Copying input files
2024-05-16 03:03:26 (20544): Guest Log: Copied input files into RunAtlas.
2024-05-16 03:03:26 (20544): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-16 03:03:26 (20544): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-16 03:03:26 (20544): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-16 03:03:26 (20544): Guest Log: Further information can be found at the LHC@home message board.
2024-05-16 03:03:29 (20544): Guest Log: 00:00:10.009827 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 635 476 000ns (GuestNow=1 715 843 009 393 241 000 ns GuestLast=1 715 828 597 757 765 000 ns fSetTimeLastLoop=true )
2024-05-16 03:03:35 (20544): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-16 03:03:35 (20544): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-16 03:03:35 (20544): Guest Log: 2.6.3.0 1613 0 30132 132788 3 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-16 03:03:36 (20544): Guest Log: copied the webapp to /var/www
2024-05-16 03:03:36 (20544): Guest Log: ATHENA_PROC_NUMBER=6
2024-05-16 03:03:36 (20544): Guest Log: ATHENA_CORE_NUMBER=6
2024-05-16 03:03:36 (20544): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-16 03:03:36 (20544): Guest Log:  *** Starting ATLAS job. (PandaID=6207116604 taskID=38921013) ***
2024-05-16 04:33:13 (20544): VM state change detected. (old = 'running', new = 'paused')
2024-05-16 10:50:38 (20544): Guest Log: 01:29:53.740501 timesync vgsvcTimeSyncWorker: Radical host time change: 22 655 528 000 000ns (HostNow=1 715 871 038 649 000 000 ns HostLast=1 715 848 383 121 000 000 ns)
2024-05-16 10:50:38 (20544): VM state change detected. (old = 'paused', new = 'running')
2024-05-16 10:50:48 (20544): Guest Log: 01:30:03.768781 timesync vgsvcTimeSyncWorker: Radical guest time change: 22 655 554 028 000ns (GuestNow=1 715 871 048 677 448 000 ns GuestLast=1 715 848 393 123 420 000 ns fSetTimeLastLoop=true )
2024-05-16 11:01:07 (20544): Status Report: Elapsed Time: '6000.000000'
2024-05-16 11:01:07 (20544): Status Report: CPU Time: '24479.500000'
2024-05-16 12:41:10 (20544): Status Report: Elapsed Time: '12000.000000'
2024-05-16 12:41:10 (20544): Status Report: CPU Time: '56035.750000'
2024-05-16 14:21:15 (20544): Status Report: Elapsed Time: '18000.000000'
2024-05-16 14:21:15 (20544): Status Report: CPU Time: '87574.765625'
2024-05-16 15:27:39 (20544): VM state change detected. (old = 'running', new = 'paused')
2024-05-16 15:30:06 (20544): VM state change detected. (old = 'paused', new = 'running')
2024-05-16 16:03:47 (20544): Status Report: Elapsed Time: '24000.000000'
2024-05-16 16:03:47 (20544): Status Report: CPU Time: '119082.921875'
2024-05-16 17:21:24 (20544): Guest Log:  *** Job finished ***
2024-05-16 17:21:24 (20544): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:18:49,554 | INFO     | [data] queue_monitor thread has finished
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:18:53,776 | INFO     | job.realtimelogging is not enabled
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:18:54,806 | INFO     | [payload] run_realtimelog thread has finished
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:18:55,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140345701410624)>', '<ExcThread(monitor, started 140344742102784)>']
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:18:55,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:18:55,358 | INFO     | [monitor] control thread has ended
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,187 | INFO     | all workflow threads have been joined
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,187 | INFO     | end of generic workflow (traces error code: 0)
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,188 | INFO     | traces error code: 0
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,234 [wrapper] ==== pilot stdout END ====
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,238 [wrapper] ==== wrapper stdout RESUME ====
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,243 [wrapper] pilotpid: 6514
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,247 [wrapper] Pilot exit status: 0
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,321 [wrapper] pandaids: 6207116604
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,354 [wrapper] cleanup: SIGTERM to supervisor_pilot  6234 6515
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,358 [wrapper] Test setup, not cleaning
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,361 [wrapper] ==== wrapper stdout END ====
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,365 [wrapper] ==== wrapper stderr END ====
2024-05-16 17:21:24 (20544): Guest Log: 2024-05-16 21:19:00,372 [wrapper] apfmon messages muted
2024-05-16 17:21:24 (20544): Guest Log:  *** Error codes and diagnostics ***
2024-05-16 17:21:24 (20544): Guest Log:     "exeErrorCode": 0,
2024-05-16 17:21:24 (20544): Guest Log:     "exeErrorDiag": "",
2024-05-16 17:21:24 (20544): Guest Log:     "pilotErrorCode": 0,
2024-05-16 17:21:24 (20544): Guest Log:     "pilotErrorDiag": "",
2024-05-16 17:21:24 (20544): Guest Log:  *** Listing of results directory ***
2024-05-16 17:21:24 (20544): Guest Log: total 346112
2024-05-16 17:21:24 (20544): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 16 02:06 pilot3.tar.gz
2024-05-16 17:21:24 (20544): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 16 02:11 queuedata.json
2024-05-16 17:21:24 (20544): Guest Log: -rwx------. 1 atlas atlas     32251 May 16 02:11 runpilot2-wrapper.sh
2024-05-16 17:21:24 (20544): Guest Log: -rwxr-xr-x. 1 atlas atlas      9191 May 16 07:03 init_data.xml
2024-05-16 17:21:24 (20544): Guest Log: -rwxr-xr-x. 1 atlas atlas    479996 May 16 07:03 input.tar.gz
2024-05-16 17:21:24 (20544): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 16 07:03 start_atlas.sh
2024-05-16 17:21:24 (20544): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 16 07:03 EVNT.38776210._000018.pool.root.1 -> /data/./ATLAS.root_0
2024-05-16 17:21:24 (20544): Guest Log: -rw-r--r--. 1 atlas atlas      2643 May 16 07:03 pandaJob.out
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas       424 May 16 07:03 setup.sh.local
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas   1010635 May 16 07:05 agis_schedconf.cvmfs.json
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas   1324701 May 16 07:05 cric_ddmendpoints.json
2024-05-16 17:21:24 (20544): Guest Log: drwx------. 4 atlas atlas      4096 May 16 07:05 pilot3
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas 345162732 May 16 21:17 HITS.38921013._000399.pool.root.1
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas      1035 May 16 21:18 memory_monitor_summary.json
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas         0 May 16 21:18 agis_ddmendpoints.agis.ALL.json
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas    487243 May 16 21:18 log.38921013._000399.job.log.tgz.1
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas        98 May 16 21:18 pilot_heartbeat.json
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas      7747 May 16 21:18 heartbeat.json
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas      4466 May 16 21:19 pilotlog.txt
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas   2411963 May 16 21:19 log.38921013._000399.job.log.1
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas       357 May 16 21:19 output.list
2024-05-16 17:21:24 (20544): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 16 21:19 runtime_log
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas   2918400 May 16 21:19 result.tar.gz
2024-05-16 17:21:24 (20544): Guest Log: -rw-r--r--. 1 atlas atlas     10937 May 16 21:19 runtime_log.err
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas       652 May 16 21:19 6FNNDmZlfR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmv5OKDm6gJCGn.diag
2024-05-16 17:21:24 (20544): Guest Log: Looking for outputfile HITS.38921013._000399.pool.root.1
2024-05-16 17:21:24 (20544): Guest Log: HITS file was successfully produced
2024-05-16 17:21:24 (20544): Guest Log: -rw-------. 1 atlas atlas 345162732 May 16 21:17 /home/atlas/RunAtlas/HITS.38921013._000399.pool.root.1
2024-05-16 17:21:25 (20544): Guest Log: Successfully finished the ATLAS job!
2024-05-16 17:21:25 (20544): Guest Log: Copying the results back to the shared directory!
2024-05-16 17:21:26 (20544): Guest Log:  *** Contents of shared directory: ***
2024-05-16 17:21:26 (20544): Guest Log: total 868420
2024-05-16 17:21:26 (20544): Guest Log: -rwxrwxrwx. 1 root root 540657388 May 16 07:02 ATLAS.root_0
2024-05-16 17:21:26 (20544): Guest Log: -rwxrwxrwx. 1 root root 345162732 May 16  2024 HITS.pool.root.1
2024-05-16 17:21:26 (20544): Guest Log: -rwxrwxrwx. 1 root root      9191 May 16 07:02 init_data.xml
2024-05-16 17:21:26 (20544): Guest Log: -rwxrwxrwx. 1 root root    479996 May 16 06:56 input.tar.gz
2024-05-16 17:21:26 (20544): Guest Log: -rwxrwxrwx. 1 root root   2918400 May 16  2024 result.tar.gz
2024-05-16 17:21:26 (20544): Guest Log: -rwxrwxrwx. 1 root root     17537 May 16 06:56 start_atlas.sh
2024-05-16 17:21:26 (20544): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-16 17:21:26 (20544): VM Completion File Detected.
2024-05-16 17:21:26 (20544): Powering off VM.
2024-05-16 17:21:27 (20544): Successfully stopped VM.
2024-05-16 17:21:27 (20544): Deregistering VM. (boinc_f2bb4899a5dc2e84, slot#4)
2024-05-16 17:21:27 (20544): Removing network bandwidth throttle group from VM.
2024-05-16 17:21:27 (20544): Removing VM from VirtualBox.
17:21:33 (20544): called boinc_finish(0)

</stderr_txt>
]]>

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