Name | MyXMDmbecR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmYsOKDmxPbNUn_0 |
Workunit | 223038130 |
Created | 15 May 2024, 22:52:08 UTC |
Sent | 16 May 2024, 2:43:50 UTC |
Report deadline | 24 May 2024, 2:43:50 UTC |
Received | 16 May 2024, 6:39:06 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 10804957 |
Run time | 3 hours 50 min 30 sec |
CPU time | 10 hours 19 min 9 sec |
Validate state | Valid |
Credit | 903.90 |
Device peak FLOPS | 41.63 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 2.35 GB |
Peak swap size | 31.58 GB |
Peak disk usage | 1.32 GB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 22:44:44 (77359): wrapper (7.7.26015): starting 22:44:44 (77359): wrapper: running run_atlas (--nthreads 8) [2024-05-15 22:44:44] Arguments: --nthreads 8 [2024-05-15 22:44:44] Threads: 8 [2024-05-15 22:44:44] Checking for CVMFS [2024-05-15 22:44:44] Probing /cvmfs/atlas.cern.ch... OK [2024-05-15 22:44:45] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-05-15 22:44:45] Running cvmfs_config stat atlas.cern.ch [2024-05-15 22:44:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2024-05-15 22:44:46] 2.11.2.0 18811 3164 99436 132782 0 301 10883073 18432000 24019 130560 0 359373 95.907 3488907 58215 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1 [2024-05-15 22:44:46] CVMFS is ok [2024-05-15 22:44:46] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-05-15 22:44:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-05-15 22:44:46] Further information can be found at the LHC@home message board. [2024-05-15 22:44:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-05-15 22:44:46] Checking for apptainer binary... [2024-05-15 22:44:46] Using apptainer found in PATH at /usr/bin/apptainer [2024-05-15 22:44:46] Running /usr/bin/apptainer --version [2024-05-15 22:44:47] apptainer version 1.3.0-1.el7 [2024-05-15 22:44:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-05-15 22:44:59] c-212-7.aglt2.org [2024-05-15 22:44:59] apptainer works [2024-05-15 22:44:59] Set ATHENA_PROC_NUMBER=8 [2024-05-15 22:44:59] Set ATHENA_CORE_NUMBER=8 [2024-05-15 22:44:59] Starting ATLAS job with PandaID=6207034537 [2024-05-15 22:44:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-05-16 02:35:11] *** The last 200 lines of the pilot log: *** [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | sum of deviations: 213609687390.02087 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | mean x: 1715834925.0157068 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | mean y: 2320335.6596858636 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | -- intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | chi2: 7.5833996835954975 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | -- intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | current memory leak: 98.87 B/s (using 191 data points, chi2=7.58) [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | .............................. [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . Timing measurements: [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . get job = 0 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . initial setup = 5 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . payload setup = 84 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . stage-in = 0 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . payload execution = 13321 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . stage-out = 2 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | . log creation = 1 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | .............................. [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | building log extracts (sent to the server as 'pilotLog') [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | executing command: tail -n 20 /tmp/boinchome/slots/5/PanDA_Pilot-6207034537/pilotlog.txt [2024-05-16 02:35:11] 2024-05-16 06:34:54,026 | WARNING | detected the following tail of warning/fatal messages in the pilot log: [2024-05-16 02:35:11] - Log from pilotlog.txt - [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | sum of deviations: 213609687390.02087 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | mean x: 1715834925.0157068 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | mean y: 2320335.6596858636 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | -- intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | chi2: 7.5833996835954975 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | -- intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | current memory leak: 98.87 B/s (using 191 data points, chi2=7.58) [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | .............................. [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . Timing measurements: [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . get job = 0 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . initial setup = 5 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . payload setup = 84 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . stage-in = 0 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . payload execution = 13321 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . stage-out = 2 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | . log creation = 1 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | .............................. [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | building log extracts (sent to the server as 'pilotLog') [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | executing command: tail -n 20 /tmp/boinchome/slots/5/PanDA_Pilot-6207034537/pilotlog.txt [2024-05-16 02:35:11] 2024-05-16 06:34:54,026 | WARNING | [2024-05-16 02:35:11] [begin log extracts] [2024-05-16 02:35:11] - Log from pilotlog.txt - [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | sum of deviations: 213609687390.02087 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | mean x: 1715834925.0157068 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | mean y: 2320335.6596858636 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | -- intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | chi2: 7.5833996835954975 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | -- intersect: -169637523722.5032 [2024-05-16 02:35:11] 2024-05-16 06:34:53,975 | INFO | current memory leak: 98.87 B/s (using 191 data points, chi2=7.58) [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | .............................. [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . Timing measurements: [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . get job = 0 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . initial setup = 5 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . payload setup = 84 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . stage-in = 0 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . payload execution = 13321 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,980 | INFO | . stage-out = 2 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | . log creation = 1 s [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | .............................. [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | building log extracts (sent to the server as 'pilotLog') [2024-05-16 02:35:11] 2024-05-16 06:34:53,981 | INFO | executing command: tail -n 20 /tmp/boinchome/slots/5/PanDA_Pilot-6207034537/pilotlog.txt [2024-05-16 02:35:11] [end log extracts] [2024-05-16 02:35:11] 2024-05-16 06:34:54,026 | WARNING | pilotErrorCodes = [1305] (will report primary/first error code) [2024-05-16 02:35:11] 2024-05-16 06:34:54,026 | WARNING | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2024-05-16 02:32:15,320 CRITICAL Transform executor raised TransformValidationExcep [2024-05-16 02:35:11] 2024-05-16 06:34:54,182 | INFO | [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | job summary report [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | -------------------------------------------------- [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | PanDA job id: 6207034537 [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | task id: 38920987 [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2024-05-16 02:32:15,320 CRITICAL Transform executor raised TransformValidationExceptio [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | status: LOG_TRANSFER = DONE [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | pilot state: failed [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | transexitcode: 65 [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | exeerrorcode: 65 [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | exeerrordiag: EVNTtoHITS got a SIGBUS signal (exit code 135) [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | exitcode: 65 [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | exitmsg: EVNTtoHITS got a SIGBUS signal (exit code 135) [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | cpuconsumptiontime: 37308 s [2024-05-16 02:35:11] 2024-05-16 06:34:54,183 | INFO | nevents: 0 [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | neventsw: 0 [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | pid: 82414 [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | pgrp: 82414 [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | corecount: 8 [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | event service: False [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | sizes: {0: 2391215, 1: 2391979, 2: 2392178, 13: 2392178, 23: 2392234, 34: 2392262, 45: 2392418, 55: 2392652, 56: 2392680, 13409: 2402347, 13410: 2422741, 13413: 24 [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | -------------------------------------------------- [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | [2024-05-16 02:35:11] 2024-05-16 06:34:54,184 | INFO | executing command: ls -lF /tmp/boinchome/slots/5 [2024-05-16 02:35:11] 2024-05-16 06:34:54,259 | INFO | queue jobs had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,259 | INFO | queue payloads had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue data_in had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue data_out had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue current_data_in had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue validated_jobs had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue validated_payloads had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue monitored_payloads had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue finished_jobs had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue finished_payloads had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue finished_data_in had 1 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue finished_data_out had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue failed_jobs had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue failed_payloads had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue failed_data_in had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue failed_data_out had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue completed_jobs had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue completed_jobids has 1 job(s) [2024-05-16 02:35:11] 2024-05-16 06:34:54,260 | INFO | queue realtimelog_payloads had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,261 | INFO | queue messages had 0 job(s) [purged] [2024-05-16 02:35:11] 2024-05-16 06:34:54,261 | INFO | job 6207034537 has completed (purged errors) [2024-05-16 02:35:11] 2024-05-16 06:34:54,261 | INFO | overall cleanup function is called [2024-05-16 02:35:11] 2024-05-16 06:34:55,268 | INFO | --- collectZombieJob: --- 10, [82414] [2024-05-16 02:35:11] 2024-05-16 06:34:55,268 | INFO | zombie collector waiting for pid 82414 [2024-05-16 02:35:11] 2024-05-16 06:34:55,268 | INFO | harmless exception when collecting zombies: [Errno 10] No child processes [2024-05-16 02:35:11] 2024-05-16 06:34:56,274 | INFO | collected zombie processes [2024-05-16 02:35:11] 2024-05-16 06:34:56,274 | INFO | will now attempt to kill all subprocesses of pid=82414 [2024-05-16 02:35:11] 2024-05-16 06:34:56,457 | INFO | process IDs to be killed: [82414] (in reverse order) [2024-05-16 02:35:11] 2024-05-16 06:34:56,735 | WARNING | found no corresponding commands to process id(s) [2024-05-16 02:35:11] 2024-05-16 06:34:56,736 | INFO | Do not look for orphan processes in BOINC jobs [2024-05-16 02:35:11] 2024-05-16 06:34:56,746 | INFO | did not find any defunct processes belonging to 82414 [2024-05-16 02:35:11] 2024-05-16 06:34:56,755 | INFO | did not find any defunct processes belonging to 82414 [2024-05-16 02:35:11] 2024-05-16 06:34:56,755 | INFO | ready for new job [2024-05-16 02:35:11] 2024-05-16 06:34:56,755 | INFO | pilot has finished with previous job - re-establishing logging [2024-05-16 02:35:11] 2024-05-16 06:34:56,757 | INFO | ************************************* [2024-05-16 02:35:11] 2024-05-16 06:34:56,757 | INFO | *** PanDA Pilot version 3.7.5.4 *** [2024-05-16 02:35:11] 2024-05-16 06:34:56,757 | INFO | ************************************* [2024-05-16 02:35:11] 2024-05-16 06:34:56,757 | INFO | [2024-05-16 02:35:11] 2024-05-16 06:34:56,762 | INFO | architecture information: [2024-05-16 02:35:11] 2024-05-16 06:34:56,762 | INFO | executing command: cat /etc/os-release [2024-05-16 02:35:11] 2024-05-16 06:34:56,777 | INFO | cat /etc/os-release: [2024-05-16 02:35:11] NAME="CentOS Linux" [2024-05-16 02:35:11] VERSION="7 (Core)" [2024-05-16 02:35:11] ID="centos" [2024-05-16 02:35:11] ID_LIKE="rhel fedora" [2024-05-16 02:35:11] VERSION_ID="7" [2024-05-16 02:35:11] PRETTY_NAME="CentOS Linux 7 (Core)" [2024-05-16 02:35:11] ANSI_COLOR="0;31" [2024-05-16 02:35:11] CPE_NAME="cpe:/o:centos:centos:7" [2024-05-16 02:35:11] HOME_URL="https://www.centos.org/" [2024-05-16 02:35:11] BUG_REPORT_URL="https://bugs.centos.org/" [2024-05-16 02:35:11] [2024-05-16 02:35:11] CENTOS_MANTISBT_PROJECT="CentOS-7" [2024-05-16 02:35:11] CENTOS_MANTISBT_PROJECT_VERSION="7" [2024-05-16 02:35:11] REDHAT_SUPPORT_PRODUCT="centos" [2024-05-16 02:35:11] REDHAT_SUPPORT_PRODUCT_VERSION="7" [2024-05-16 02:35:11] [2024-05-16 02:35:11] 2024-05-16 06:34:56,777 | INFO | ************************************* [2024-05-16 02:35:11] 2024-05-16 06:34:57,281 | INFO | executing command: df -mP /tmp/boinchome/slots/5 [2024-05-16 02:35:11] 2024-05-16 06:34:57,314 | INFO | sufficient remaining disk space (99801366528 B) [2024-05-16 02:35:11] 2024-05-16 06:34:57,314 | WARNING | since timefloor is set to 0, pilot was only allowed to run one job [2024-05-16 02:35:11] 2024-05-16 06:34:57,314 | WARNING | setting graceful_stop since proceed_with_getjob() returned False (pilot will end) [2024-05-16 02:35:11] 2024-05-16 06:34:57,750 | WARNING | job monitor detected an abort_job request (signal=args.signal) [2024-05-16 02:35:11] 2024-05-16 06:34:57,750 | WARNING | cannot recover job monitoring - aborting pilot [2024-05-16 02:35:11] 2024-05-16 06:34:57,751 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-05-16 02:35:11] 2024-05-16 06:34:57,751 | INFO | will abort loop [2024-05-16 02:35:11] 2024-05-16 06:34:57,903 | INFO | all data control threads have been joined [2024-05-16 02:35:11] 2024-05-16 06:34:58,194 | INFO | found 0 job(s) in 20 queues [2024-05-16 02:35:11] 2024-05-16 06:34:58,194 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-05-16 02:35:11] 2024-05-16 06:34:58,194 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-05-16 02:35:11] 2024-05-16 06:34:58,238 | INFO | all payload control threads have been joined [2024-05-16 02:35:11] 2024-05-16 06:34:58,321 | INFO | [job] retrieve thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,339 | INFO | all job control threads have been joined [2024-05-16 02:35:11] 2024-05-16 06:34:58,467 | INFO | [payload] run_realtimelog thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,501 | INFO | [payload] execute_payloads thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,564 | INFO | [data] copytool_in thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,685 | WARNING | data:copytool_out:received graceful stop - abort after this iteration [2024-05-16 02:35:11] 2024-05-16 06:34:58,757 | INFO | [job] job monitor thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,842 | INFO | [payload] failed_post thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,846 | INFO | [payload] validate_pre thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:58,909 | INFO | [data] control thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:59,200 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-05-16 02:35:11] 2024-05-16 06:34:59,244 | INFO | [payload] control thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:59,345 | INFO | [job] control thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:59,424 | INFO | [job] validate thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:59,488 | INFO | [job] create_data_payload thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:59,660 | INFO | [payload] validate_post thread has finished [2024-05-16 02:35:11] 2024-05-16 06:34:59,995 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-05-16 02:35:11] 2024-05-16 06:35:00,206 | INFO | [job] queue monitor thread has finished [2024-05-16 02:35:11] 2024-05-16 06:35:00,692 | INFO | [data] copytool_out thread has finished [2024-05-16 02:35:11] 2024-05-16 06:35:04,008 | INFO | [data] queue_monitor thread has finished [2024-05-16 02:35:11] 2024-05-16 06:35:05,409 | INFO | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139816856450880)>', '<ExcThread(monitor, started 139816209475328)>'] [2024-05-16 02:35:11] 2024-05-16 06:35:06,243 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-05-16 02:35:11] 2024-05-16 06:35:06,243 | INFO | [monitor] control thread has ended [2024-05-16 02:35:11] 2024-05-16 06:35:10,434 | INFO | all workflow threads have been joined [2024-05-16 02:35:11] 2024-05-16 06:35:10,434 | INFO | end of generic workflow (traces error code: 0) [2024-05-16 02:35:11] 2024-05-16 06:35:10,435 | INFO | traces error code: 0 [2024-05-16 02:35:11] 2024-05-16 06:35:10,435 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-05-16 02:35:11] 2024-05-16 06:35:10,563 [wrapper] ==== pilot stdout END ==== [2024-05-16 02:35:11] 2024-05-16 06:35:10,565 [wrapper] ==== wrapper stdout RESUME ==== [2024-05-16 02:35:11] 2024-05-16 06:35:10,568 [wrapper] pilotpid: 23240 [2024-05-16 02:35:11] 2024-05-16 06:35:10,570 [wrapper] Pilot exit status: 0 [2024-05-16 02:35:11] 2024-05-16 06:35:10,661 [wrapper] pandaids: 6207034537 [2024-05-16 02:35:11] 2024-05-16 06:35:11,014 [wrapper] cleanup: SIGTERM to supervisor_pilot 30866 23241 [2024-05-16 02:35:11] 2024-05-16 06:35:11,017 [wrapper] Test setup, not cleaning [2024-05-16 02:35:11] 2024-05-16 06:35:11,018 [wrapper] ==== wrapper stdout END ==== [2024-05-16 02:35:11] 2024-05-16 06:35:11,033 [wrapper] ==== wrapper stderr END ==== [2024-05-16 02:35:11] 2024-05-16 06:35:11,118 [wrapper] apfmon messages muted [2024-05-16 02:35:11] *** Error codes and diagnostics *** [2024-05-16 02:35:11] "exeErrorCode": 65, [2024-05-16 02:35:11] "exeErrorDiag": "EVNTtoHITS got a SIGBUS signal (exit code 135)", [2024-05-16 02:35:11] "pilotErrorCode": 1305, [2024-05-16 02:35:11] "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-05-16 02:32:15,320 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGBUS signal (exit code 135)", [2024-05-16 02:35:11] *** Listing of results directory *** [2024-05-16 02:35:11] total 628568 [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 467845 May 15 18:23 pilot3.tar.gz [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 5633 May 15 18:50 queuedata.json [2024-05-16 02:35:11] -rwx------ 1 boincer umatlas 32251 May 15 18:51 runpilot2-wrapper.sh [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 100 May 15 22:44 wrapper_26015_x86_64-pc-linux-gnu [2024-05-16 02:35:11] -rwxr-xr-x 1 boincer umatlas 7986 May 15 22:44 run_atlas [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 105 May 15 22:44 job.xml [2024-05-16 02:35:11] -rw-r--r-- 2 boincer umatlas 636890947 May 15 22:44 EVNT.38776170._000037.pool.root.1 [2024-05-16 02:35:11] -rw-r--r-- 2 boincer umatlas 17537 May 15 22:44 start_atlas.sh [2024-05-16 02:35:11] drwxrwx--x 2 boincer umatlas 4096 May 15 22:44 shared [2024-05-16 02:35:11] -rw-r--r-- 2 boincer umatlas 479999 May 15 22:44 input.tar.gz [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 0 May 15 22:44 boinc_lockfile [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 2614 May 15 22:44 pandaJob.out [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 467 May 15 22:45 setup.sh.local [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 1011355 May 15 22:47 agis_schedconf.cvmfs.json [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 1324701 May 15 22:47 cric_ddmendpoints.json [2024-05-16 02:35:11] drwx------ 4 boincer umatlas 4096 May 15 22:47 pilot3 [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 6387 May 16 02:31 init_data.xml [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 532 May 16 02:32 boinc_task_state.xml [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 1081 May 16 02:32 memory_monitor_summary.json [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 362970 May 16 02:32 log.38920987._000912.job.log.tgz.1 [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 0 May 16 02:32 agis_ddmendpoints.agis.ALL.json [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 95 May 16 02:34 pilot_heartbeat.json [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 8731 May 16 02:34 heartbeat.json [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 8192 May 16 02:35 boinc_mmap_file [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 28 May 16 02:35 wrapper_checkpoint.txt [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 4397 May 16 02:35 pilotlog.txt [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 1259500 May 16 02:35 log.38920987._000912.job.log.1 [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 188 May 16 02:35 output.list [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 620 May 16 02:35 runtime_log [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 1638400 May 16 02:35 result.tar.gz [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 11248 May 16 02:35 runtime_log.err [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 650 May 16 02:35 MyXMDmbecR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmYsOKDmxPbNUn.diag [2024-05-16 02:35:11] -rw-r--r-- 1 boincer umatlas 21322 May 16 02:35 stderr.txt [2024-05-16 02:35:11] No HITS result produced [2024-05-16 02:35:11] *** Contents of shared directory: *** [2024-05-16 02:35:11] total 624060 [2024-05-16 02:35:11] -rw-r--r-- 2 boincer umatlas 636890947 May 15 22:44 ATLAS.root_0 [2024-05-16 02:35:11] -rw-r--r-- 2 boincer umatlas 17537 May 15 22:44 start_atlas.sh [2024-05-16 02:35:11] -rw-r--r-- 2 boincer umatlas 479999 May 15 22:44 input.tar.gz [2024-05-16 02:35:11] -rw------- 1 boincer umatlas 1638400 May 16 02:35 result.tar.gz 02:35:13 (77359): run_atlas exited; CPU time 36378.852348 02:35:13 (77359): called boinc_finish(0) </stderr_txt> ]]>
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