Stderr output

<core_client_version>8.0.0</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-16 04:49:45 (31848): Detected: vboxwrapper 26206
2024-05-16 04:49:45 (31848): Detected: BOINC client v8.0.0
2024-05-16 04:49:46 (31848): Detected: VirtualBox VboxManage Interface (Version: 7.0.18)
2024-05-16 04:49:46 (31848): Successfully copied 'init_data.xml' to the shared directory.
2024-05-16 04:49:47 (31848): Create VM. (boinc_82dc1456b879d665, slot#13)
2024-05-16 04:49:47 (31848): Setting Memory Size for VM. (4096MB)
2024-05-16 04:49:48 (31848): Setting CPU Count for VM. (1)
2024-05-16 04:49:48 (31848): Setting Chipset Options for VM.
2024-05-16 04:49:48 (31848): Setting Graphics Controller Options for VM.
2024-05-16 04:49:48 (31848): Setting Boot Options for VM.
2024-05-16 04:49:49 (31848): Setting Network Configuration for NAT.
2024-05-16 04:49:49 (31848): Enabling VM Network Access.
2024-05-16 04:49:49 (31848): Disabling USB Support for VM.
2024-05-16 04:49:49 (31848): Disabling COM Port Support for VM.
2024-05-16 04:49:50 (31848): Disabling LPT Port Support for VM.
2024-05-16 04:49:50 (31848): Disabling Audio Support for VM.
2024-05-16 04:49:50 (31848): Disabling Clipboard Support for VM.
2024-05-16 04:49:50 (31848): Disabling Drag and Drop Support for VM.
2024-05-16 04:49:51 (31848): Adding storage controller(s) to VM.
2024-05-16 04:49:51 (31848): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-16 04:49:51 (31848): Adding VirtualBox Guest Additions to VM.
2024-05-16 04:49:52 (31848): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-16 04:49:52 (31848): forwarding host port 51829 to guest port 80
2024-05-16 04:49:52 (31848): Enabling remote desktop for VM.
2024-05-16 04:49:53 (31848): Enabling shared directory for VM.
2024-05-16 04:49:53 (31848): Starting VM using VBoxManage interface. (boinc_82dc1456b879d665, slot#13)
2024-05-16 04:49:58 (31848): Successfully started VM. (PID = '8960')
2024-05-16 04:49:58 (31848): Reporting VM Process ID to BOINC.
2024-05-16 04:49:58 (31848): Guest Log: BIOS: VirtualBox 7.0.18
2024-05-16 04:49:58 (31848): Guest Log: CPUID EDX: 0x178bfbff
2024-05-16 04:49:58 (31848): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-16 04:49:58 (31848): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-16 04:49:58 (31848): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-16 04:49:58 (31848): Detected: Web Application Enabled (http://localhost:51829)
2024-05-16 04:49:58 (31848): Detected: Remote Desktop Enabled (localhost:51832)
2024-05-16 04:49:58 (31848): Preference change detected
2024-05-16 04:49:58 (31848): Setting CPU throttle for VM. (100%)
2024-05-16 04:49:58 (31848): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-16 04:50:00 (31848): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-16 04:50:00 (31848): Guest Log: BIOS: Booting from Hard Disk...
2024-05-16 04:50:02 (31848): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-16 04:50:02 (31848): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-16 04:50:02 (31848): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-16 04:50:05 (31848): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-16 04:50:05 (31848): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-16 04:50:10 (31848): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000089 main     Log opened 2024-05-16T04:50:08.782832000Z
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000186 main     OS Product: Linux
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000204 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000217 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000231 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000232 main     Process ID: 1235
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.000232 main     Package type: LINUX_64BITS_GENERIC
2024-05-16 04:50:10 (31848): Guest Log: 00:00:00.001105 main     5.2.32 r132073 started. Verbose level = 0
2024-05-16 04:50:10 (31848): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-16 04:50:10 (31848): Guest Log: [INFO] Mounting shared directory
2024-05-16 04:50:10 (31848): Guest Log: [INFO] Checking for init_data.xml
2024-05-16 04:50:13 (31848): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-16 04:50:13 (31848): Guest Log: [INFO] Detected branch: prod
2024-05-16 04:50:13 (31848): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-16 04:50:13 (31848): Guest Log: Copying input files
2024-05-16 04:50:15 (31848): Guest Log: Copied input files into RunAtlas.
2024-05-16 04:50:15 (31848): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-05-16 04:50:20 (31848): Guest Log: 00:00:10.009727 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 626 998 000ns (GuestNow=1 715 827 820 165 217 000 ns GuestLast=1 715 835 008 792 215 000 ns fSetTimeLastLoop=true )
2024-05-16 04:50:24 (31848): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-16 04:50:24 (31848): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-16 04:50:24 (31848): Guest Log: 2.6.3.0 1504 0 31560 132782 4 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-05-16 04:50:25 (31848): Guest Log: copied the webapp to /var/www
2024-05-16 04:50:25 (31848): Guest Log: core_number=1
2024-05-16 04:50:25 (31848): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-16 04:50:25 (31848): Guest Log:  *** Starting ATLAS job. (PandaID=6207007124 taskID=38920987) ***
2024-05-16 06:30:00 (31848): Status Report: Elapsed Time: '6000.000000'
2024-05-16 06:30:00 (31848): Status Report: CPU Time: '5220.343750'
2024-05-16 08:10:03 (31848): Status Report: Elapsed Time: '12000.000000'
2024-05-16 08:10:03 (31848): Status Report: CPU Time: '11210.781250'
2024-05-16 09:50:06 (31848): Status Report: Elapsed Time: '18000.000000'
2024-05-16 09:50:06 (31848): Status Report: CPU Time: '17204.265625'
2024-05-16 11:30:08 (31848): Status Report: Elapsed Time: '24000.000000'
2024-05-16 11:30:08 (31848): Status Report: CPU Time: '23196.734375'
2024-05-16 13:10:11 (31848): Status Report: Elapsed Time: '30000.000000'
2024-05-16 13:10:11 (31848): Status Report: CPU Time: '29188.609375'
2024-05-16 14:50:13 (31848): Status Report: Elapsed Time: '36000.000000'
2024-05-16 14:50:13 (31848): Status Report: CPU Time: '35181.218750'
2024-05-16 16:30:16 (31848): Status Report: Elapsed Time: '42000.000000'
2024-05-16 16:30:16 (31848): Status Report: CPU Time: '41173.531250'
2024-05-16 18:10:18 (31848): Status Report: Elapsed Time: '48000.000000'
2024-05-16 18:10:18 (31848): Status Report: CPU Time: '47167.109375'
2024-05-16 19:50:21 (31848): Status Report: Elapsed Time: '54000.000000'
2024-05-16 19:50:21 (31848): Status Report: CPU Time: '53156.312500'
2024-05-16 21:30:23 (31848): Status Report: Elapsed Time: '60000.000000'
2024-05-16 21:30:23 (31848): Status Report: CPU Time: '59141.453125'
2024-05-16 22:02:40 (31848): Guest Log:  *** Job finished ***
2024-05-16 22:02:40 (31848): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:09,530 | INFO     | [job] control thread has finished
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:10,369 | INFO     | [job] queue monitor thread has finished
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:13,457 | INFO     | [data] queue_monitor thread has finished
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:15,370 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088499181376)>', '<ExcThread(monitor, started 140087933265664)>']
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:15,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:15,944 | INFO     | [monitor] control thread has ended
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,376 | INFO     | all workflow threads have been joined
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,376 | INFO     | end of generic workflow (traces error code: 0)
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,376 | INFO     | traces error code: 0
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,428 [wrapper] ==== pilot stdout END ====
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,430 [wrapper] ==== wrapper stdout RESUME ====
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,431 [wrapper] pilotpid: 6308
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,432 [wrapper] Pilot exit status: 0
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,478 [wrapper] pandaids: 6207007124
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,489 [wrapper] cleanup: SIGTERM to supervisor_pilot  2976 6309
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,491 [wrapper] Test setup, not cleaning
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,493 [wrapper] ==== wrapper stdout END ====
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,494 [wrapper] ==== wrapper stderr END ====
2024-05-16 22:02:40 (31848): Guest Log: 2024-05-16 20:02:20,497 [wrapper] apfmon messages muted
2024-05-16 22:02:40 (31848): Guest Log:  *** Error codes and diagnostics ***
2024-05-16 22:02:40 (31848): Guest Log:     "exeErrorCode": 0,
2024-05-16 22:02:40 (31848): Guest Log:     "exeErrorDiag": "",
2024-05-16 22:02:40 (31848): Guest Log:     "pilotErrorCode": 0,
2024-05-16 22:02:40 (31848): Guest Log:     "pilotErrorDiag": "",
2024-05-16 22:02:40 (31848): Guest Log:  *** Listing of results directory ***
2024-05-16 22:02:40 (31848): Guest Log: total 355548
2024-05-16 22:02:40 (31848): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May 15 22:05 pilot3.tar.gz
2024-05-16 22:02:40 (31848): Guest Log: -rwx------. 1 atlas atlas     32251 May 15 22:19 runpilot2-wrapper.sh
2024-05-16 22:02:40 (31848): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May 15 22:19 queuedata.json
2024-05-16 22:02:40 (31848): Guest Log: -rwxr-xr-x. 1 atlas atlas      9304 May 16 02:50 init_data.xml
2024-05-16 22:02:40 (31848): Guest Log: -rwxr-xr-x. 1 atlas atlas    479995 May 16 02:50 input.tar.gz
2024-05-16 22:02:40 (31848): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 16 02:50 start_atlas.sh
2024-05-16 22:02:40 (31848): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 16 02:50 EVNT.38776170._000024.pool.root.1 -> /data/./ATLAS.root_0
2024-05-16 22:02:40 (31848): Guest Log: -rw-r--r--. 1 atlas atlas      2613 May 16 02:50 pandaJob.out
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas       460 May 16 02:50 setup.sh.local
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas   1011355 May 16 02:50 agis_schedconf.cvmfs.json
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas   1324701 May 16 02:50 cric_ddmendpoints.json
2024-05-16 22:02:40 (31848): Guest Log: drwx------. 4 atlas atlas      4096 May 16 02:50 pilot3
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas        95 May 16 20:01 pilot_heartbeat.json
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas 340956887 May 16 20:01 HITS.38920987._000596.pool.root.1
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas      1021 May 16 20:01 memory_monitor_summary.json
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas         0 May 16 20:01 agis_ddmendpoints.agis.ALL.json
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas    877469 May 16 20:01 log.38920987._000596.job.log.tgz.1
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas      7705 May 16 20:02 heartbeat.json
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas      4580 May 16 20:02 pilotlog.txt
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas   8955645 May 16 20:02 log.38920987._000596.job.log.1
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas       357 May 16 20:02 output.list
2024-05-16 22:02:40 (31848): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 16 20:02 runtime_log
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas   9850880 May 16 20:02 result.tar.gz
2024-05-16 22:02:40 (31848): Guest Log: -rw-r--r--. 1 atlas atlas     11170 May 16 20:02 runtime_log.err
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas       647 May 16 20:02 cDsNDmj9bR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmSqOKDmnbSF7n.diag
2024-05-16 22:02:40 (31848): Guest Log: Looking for outputfile HITS.38920987._000596.pool.root.1
2024-05-16 22:02:40 (31848): Guest Log: HITS file was successfully produced
2024-05-16 22:02:40 (31848): Guest Log: -rw-------. 1 atlas atlas 340956887 May 16 20:01 /home/atlas/RunAtlas/HITS.38920987._000596.pool.root.1
2024-05-16 22:02:42 (31848): Guest Log: Successfully finished the ATLAS job!
2024-05-16 22:02:42 (31848): Guest Log: Copying the results back to the shared directory!
2024-05-16 22:02:42 (31848): Guest Log:  *** Contents of shared directory: ***
2024-05-16 22:02:42 (31848): Guest Log: total 967072
2024-05-16 22:02:42 (31848): Guest Log: -rwxrwxrwx. 1 root root 638955223 May 16 02:49 ATLAS.root_0
2024-05-16 22:02:42 (31848): Guest Log: -rwxrwxrwx. 1 root root 340956887 May 16  2024 HITS.pool.root.1
2024-05-16 22:02:42 (31848): Guest Log: -rwxrwxrwx. 1 root root      9304 May 16 02:49 init_data.xml
2024-05-16 22:02:42 (31848): Guest Log: -rwxrwxrwx. 1 root root    479995 May 16 02:48 input.tar.gz
2024-05-16 22:02:42 (31848): Guest Log: -rwxrwxrwx. 1 root root   9850880 May 16  2024 result.tar.gz
2024-05-16 22:02:42 (31848): Guest Log: -rwxrwxrwx. 1 root root     17537 May 16 02:48 start_atlas.sh
2024-05-16 22:02:42 (31848): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-16 22:02:42 (31848): VM Completion File Detected.
2024-05-16 22:02:42 (31848): Powering off VM.
2024-05-16 22:02:42 (31848): Successfully stopped VM.
2024-05-16 22:02:42 (31848): Deregistering VM. (boinc_82dc1456b879d665, slot#13)
2024-05-16 22:02:42 (31848): Removing network bandwidth throttle group from VM.
2024-05-16 22:02:43 (31848): Removing VM from VirtualBox.
22:02:48 (31848): called boinc_finish(0)

</stderr_txt>
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