Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:33:51 (1227753): wrapper (7.7.26015): starting
20:33:51 (1227753): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 20:33:51] Arguments: --nthreads 8
[2024-05-15 20:33:51] Threads: 8
[2024-05-15 20:33:51] Checking for CVMFS
[2024-05-15 20:33:51] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 20:33:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 20:33:52] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 20:33:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 20:33:53] 2.11.2.0 911815 4379 77736 132779 0 56 9415952 18432000 4566 130560 0 19315117 99.971 1858495 8512 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-15 20:33:53] CVMFS is ok
[2024-05-15 20:33:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 20:33:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 20:33:54] Further information can be found at the LHC@home message board.
[2024-05-15 20:33:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 20:33:54] Checking for apptainer binary...
[2024-05-15 20:33:54] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 20:33:54] Running /usr/bin/apptainer --version
[2024-05-15 20:33:54] apptainer version 1.2.4-1.el7
[2024-05-15 20:33:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 20:33:55] gc-9-36.aglt2.org
[2024-05-15 20:33:55] apptainer works
[2024-05-15 20:33:55] Set ATHENA_PROC_NUMBER=8
[2024-05-15 20:33:55] Set ATHENA_CORE_NUMBER=8
[2024-05-15 20:33:55] Starting ATLAS job with PandaID=6206926368
[2024-05-15 20:33:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 22:14:16]  *** The last 200 lines of the pilot log: ***
[2024-05-15 22:14:16] ]
[2024-05-15 22:14:16] 2024-05-16 02:13:29,315 | INFO     | transferring file log.38776104._008548.job.log.tgz.1 from /data/boinchome/slots/2/PanDA_Pilot-6206926368/log.38776104._008548.job.log.tgz.1 to /data/boinchome/slot
[2024-05-15 22:14:16] 2024-05-16 02:13:29,315 | INFO     | executing command: /usr/bin/env mv /data/boinchome/slots/2/PanDA_Pilot-6206926368/log.38776104._008548.job.log.tgz.1 /data/boinchome/slots/2/log.38776104._008548.j
[2024-05-15 22:14:16] 2024-05-16 02:13:29,443 | INFO     | adding to output.list: log.38776104._008548.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/69/log.38776104._008548.job.log.tg
[2024-05-15 22:14:16] 2024-05-16 02:13:29,444 | INFO     | summary of transferred files:
[2024-05-15 22:14:16] 2024-05-16 02:13:29,444 | INFO     |  -- lfn=log.38776104._008548.job.log.tgz.1, status_code=0, status=transferred
[2024-05-15 22:14:16] 2024-05-16 02:13:29,445 | INFO     | stage-out finished correctly
[2024-05-15 22:14:16] 2024-05-16 02:13:30,250 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-15 22:14:16] 2024-05-16 02:13:30,536 | WARNING  | process 1247894 is no longer using CPU - aborting
[2024-05-15 22:14:16] 2024-05-16 02:13:30,536 | INFO     | will not send any job update
[2024-05-15 22:14:16] 2024-05-16 02:13:30,832 | INFO     | job 6206926368 has state=finished
[2024-05-15 22:14:16] 2024-05-16 02:13:30,832 | INFO     | preparing for final server update for job 6206926368 in state='finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:30,833 | INFO     | this job has now completed (state=finished)
[2024-05-15 22:14:16] 2024-05-16 02:13:30,833 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-15 22:14:16] 2024-05-16 02:13:30,833 | INFO     | job 6206926368 has finished - writing final server update
[2024-05-15 22:14:16] 2024-05-16 02:13:30,833 | INFO     | total number of processed events: 400 (read)
[2024-05-15 22:14:16] 2024-05-16 02:13:30,840 | INFO     | executing command: lscpu
[2024-05-15 22:14:16] 2024-05-16 02:13:30,967 | INFO     | found 24 cores (12 cores per socket, 2 sockets)
[2024-05-15 22:14:16] 2024-05-16 02:13:30,967 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-15 22:14:16] 2024-05-16 02:13:31,203 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-15 22:14:16] 2024-05-16 02:13:33,040 | INFO     | monitor loop #462: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:33,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:35,552 | INFO     | monitor loop #463: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:35,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:38,057 | INFO     | monitor loop #464: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:38,057 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:40,562 | INFO     | monitor loop #465: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:40,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:43,069 | INFO     | monitor loop #466: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:43,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:45,578 | INFO     | monitor loop #467: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:45,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:48,098 | INFO     | monitor loop #468: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:48,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:50,603 | INFO     | monitor loop #469: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:50,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:53,108 | INFO     | monitor loop #470: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:53,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:55,613 | INFO     | monitor loop #471: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:55,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,122 | INFO     | monitor loop #472: job 0:6206926368 is in state 'finished'
[2024-05-15 22:14:16] 2024-05-16 02:13:58,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,357 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-15 22:14:16] 2024-05-16 02:13:58,358 | INFO     | using path: /data/boinchome/slots/2/PanDA_Pilot-6206926368/memory_monitor_summary.json (trf name=prmon)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,359 | INFO     | extracted standard info from prmon json
[2024-05-15 22:14:16] 2024-05-16 02:13:58,359 | INFO     | extracted standard memory fields from prmon json
[2024-05-15 22:14:16] 2024-05-16 02:13:58,359 | WARNING  | GPU info not found in prmon json
[2024-05-15 22:14:16] 2024-05-16 02:13:58,359 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 22:14:16] 2024-05-16 02:13:58,359 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 22:14:16] 2024-05-16 02:13:58,365 | INFO     | fitting pss+swap vs Time
[2024-05-15 22:14:16] 2024-05-16 02:13:58,366 | INFO     | model: linear, x: [1715820133.0, 1715820194.0, 1715820255.0, 1715820316.0, 1715820377.0, 1715820438.0, 1715820499.0, 1715820560.0, 1715820621.0, 1715820682.0, 1715
[2024-05-15 22:14:16] 2024-05-16 02:13:58,366 | INFO     | sum of square deviations: 211285822.0
[2024-05-15 22:14:16] 2024-05-16 02:13:58,366 | INFO     | sum of deviations: -57842152.000000276
[2024-05-15 22:14:16] 2024-05-16 02:13:58,366 | INFO     | mean x: 1715822786.5
[2024-05-15 22:14:16] 2024-05-16 02:13:58,366 | INFO     | mean y: 2574628.8636363638
[2024-05-15 22:14:16] 2024-05-16 02:13:58,366 | INFO     | -- intersect: 472302703.7639817
[2024-05-15 22:14:16] 2024-05-16 02:13:58,367 | INFO     | intersect: 472302703.7639817
[2024-05-15 22:14:16] 2024-05-16 02:13:58,367 | INFO     | chi2: 0.4737616182792401
[2024-05-15 22:14:16] 2024-05-16 02:13:58,367 | INFO     | -- intersect: 472302703.7639817
[2024-05-15 22:14:16] 2024-05-16 02:13:58,367 | INFO     | current memory leak: -0.27 B/s (using 88 data points, chi2=0.47)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,367 | INFO     | ..............................
[2024-05-15 22:14:16] 2024-05-16 02:13:58,367 | INFO     | . Timing measurements:
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . get job = 0 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . initial setup = 2 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . payload setup = 38 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . stage-in = 0 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . payload execution = 5807 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . stage-out = 1 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | . log creation = 0 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,368 | INFO     | ..............................
[2024-05-15 22:14:16] 2024-05-16 02:13:58,522 | INFO     | 
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | job summary report
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | --------------------------------------------------
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | PanDA job id: 6206926368
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | task id: 38776104
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | errors: (none)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | pilot state: finished 
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | transexitcode: 0
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | exeerrorcode: 0
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | exeerrordiag: 
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | exitcode: 0
[2024-05-15 22:14:16] 2024-05-16 02:13:58,523 | INFO     | exitmsg: OK
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | cpuconsumptiontime: 37055 s
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | nevents: 400
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | neventsw: 0
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | pid: 1247894
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | pgrp: 1247894
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | corecount: 8
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | event service: False
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | sizes: {0: 2392152, 11: 2392152, 22: 2392180, 32: 2392442, 5850: 2418881, 5852: 2427843, 5853: 2428027, 5881: 2428197}
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | --------------------------------------------------
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | 
[2024-05-15 22:14:16] 2024-05-16 02:13:58,524 | INFO     | executing command: ls -lF /data/boinchome/slots/2
[2024-05-15 22:14:16] 2024-05-16 02:13:58,783 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,783 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,783 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,783 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,784 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,785 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 22:14:16] 2024-05-16 02:13:58,785 | INFO     | job 6206926368 has completed (purged errors)
[2024-05-15 22:14:16] 2024-05-16 02:13:58,785 | INFO     | overall cleanup function is called
[2024-05-15 22:14:16] 2024-05-16 02:13:59,797 | INFO     | --- collectZombieJob: --- 10, [1247894]
[2024-05-15 22:14:16] 2024-05-16 02:13:59,797 | INFO     | zombie collector waiting for pid 1247894
[2024-05-15 22:14:16] 2024-05-16 02:13:59,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 22:14:16] 2024-05-16 02:14:00,803 | INFO     | collected zombie processes
[2024-05-15 22:14:16] 2024-05-16 02:14:00,803 | INFO     | will now attempt to kill all subprocesses of pid=1247894
[2024-05-15 22:14:16] 2024-05-16 02:14:01,035 | INFO     | process IDs to be killed: [1247894] (in reverse order)
[2024-05-15 22:14:16] 2024-05-16 02:14:01,481 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 22:14:16] 2024-05-16 02:14:01,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 22:14:16] 2024-05-16 02:14:01,493 | INFO     | did not find any defunct processes belonging to 1247894
[2024-05-15 22:14:16] 2024-05-16 02:14:01,510 | INFO     | did not find any defunct processes belonging to 1247894
[2024-05-15 22:14:16] 2024-05-16 02:14:01,510 | INFO     | ready for new job
[2024-05-15 22:14:16] 2024-05-16 02:14:01,510 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 22:14:16] 2024-05-16 02:14:01,512 | INFO     | *************************************
[2024-05-15 22:14:16] 2024-05-16 02:14:01,512 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 22:14:16] 2024-05-16 02:14:01,516 | INFO     | *************************************
[2024-05-15 22:14:16] 2024-05-16 02:14:01,516 | INFO     | 
[2024-05-15 22:14:16] 2024-05-16 02:14:01,519 | INFO     | architecture information:
[2024-05-15 22:14:16] 2024-05-16 02:14:01,523 | INFO     | executing command: cat /etc/os-release
[2024-05-15 22:14:16] 2024-05-16 02:14:01,597 | INFO     | cat /etc/os-release:
[2024-05-15 22:14:16] NAME="CentOS Linux"
[2024-05-15 22:14:16] VERSION="7 (Core)"
[2024-05-15 22:14:16] ID="centos"
[2024-05-15 22:14:16] ID_LIKE="rhel fedora"
[2024-05-15 22:14:16] VERSION_ID="7"
[2024-05-15 22:14:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 22:14:16] ANSI_COLOR="0;31"
[2024-05-15 22:14:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 22:14:16] HOME_URL="https://www.centos.org/"
[2024-05-15 22:14:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 22:14:16] 
[2024-05-15 22:14:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 22:14:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 22:14:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 22:14:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 22:14:16] 
[2024-05-15 22:14:16] 2024-05-16 02:14:01,598 | INFO     | *************************************
[2024-05-15 22:14:16] 2024-05-16 02:14:02,101 | INFO     | executing command: df -mP /data/boinchome/slots/2
[2024-05-15 22:14:16] 2024-05-16 02:14:02,180 | INFO     | sufficient remaining disk space (905741074432 B)
[2024-05-15 22:14:16] 2024-05-16 02:14:02,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 22:14:16] 2024-05-16 02:14:02,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 22:14:16] 2024-05-16 02:14:02,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 22:14:16] 2024-05-16 02:14:02,180 | INFO     | aborting loop
[2024-05-15 22:14:16] 2024-05-16 02:14:02,237 | INFO     | all payload control threads have been joined
[2024-05-15 22:14:16] 2024-05-16 02:14:02,286 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 22:14:16] 2024-05-16 02:14:02,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 22:14:16] 2024-05-16 02:14:02,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 22:14:16] 2024-05-16 02:14:02,556 | INFO     | all data control threads have been joined
[2024-05-15 22:14:16] 2024-05-16 02:14:02,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 22:14:16] 2024-05-16 02:14:03,186 | INFO     | [job] retrieve thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,187 | INFO     | [job] job monitor thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,243 | INFO     | [payload] control thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,258 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,259 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,427 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 22:14:16] 2024-05-16 02:14:03,439 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,485 | INFO     | [job] validate thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,526 | INFO     | [data] copytool_in thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,539 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 22:14:16] 2024-05-16 02:14:03,562 | INFO     | [data] control thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:03,563 | INFO     | all job control threads have been joined
[2024-05-15 22:14:16] 2024-05-16 02:14:03,566 | INFO     | [payload] failed_post thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:04,081 | INFO     | [payload] validate_post thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:04,545 | INFO     | [job] queue monitor thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:04,569 | INFO     | [job] control thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:04,577 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:04,700 | INFO     | [data] copytool_out thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:07,436 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 22:14:16] 2024-05-16 02:14:09,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786920879936)>', '<ExcThread(monitor, started 139786270529280)>']
[2024-05-15 22:14:16] 2024-05-16 02:14:10,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 22:14:16] 2024-05-16 02:14:10,389 | INFO     | [monitor] control thread has ended
[2024-05-15 22:14:16] 2024-05-16 02:14:14,562 | INFO     | all workflow threads have been joined
[2024-05-15 22:14:16] 2024-05-16 02:14:14,562 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 22:14:16] 2024-05-16 02:14:14,563 | INFO     | traces error code: 0
[2024-05-15 22:14:16] 2024-05-16 02:14:14,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 22:14:16] 2024-05-16 02:14:14,900 [wrapper] ==== pilot stdout END ====
[2024-05-15 22:14:16] 2024-05-16 02:14:14,939 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 22:14:16] 2024-05-16 02:14:14,973 [wrapper] pilotpid: 1235337
[2024-05-15 22:14:16] 2024-05-16 02:14:15,007 [wrapper] Pilot exit status: 0
[2024-05-15 22:14:16] 2024-05-16 02:14:15,115 [wrapper] pandaids: 6206926368
[2024-05-15 22:14:16] 2024-05-16 02:14:15,241 [wrapper] cleanup: SIGTERM to supervisor_pilot 1590112 1235338
[2024-05-15 22:14:16] 2024-05-16 02:14:15,263 [wrapper] Test setup, not cleaning
[2024-05-15 22:14:16] 2024-05-16 02:14:15,289 [wrapper] ==== wrapper stdout END ====
[2024-05-15 22:14:16] 2024-05-16 02:14:15,318 [wrapper] ==== wrapper stderr END ====
[2024-05-15 22:14:16] 2024-05-16 02:14:15,356 [wrapper] apfmon messages muted
[2024-05-15 22:14:16]  *** Error codes and diagnostics ***
[2024-05-15 22:14:16]     "exeErrorCode": 0,
[2024-05-15 22:14:16]     "exeErrorDiag": "",
[2024-05-15 22:14:16]     "pilotErrorCode": 0,
[2024-05-15 22:14:16]     "pilotErrorDiag": "",
[2024-05-15 22:14:16]  *** Listing of results directory ***
[2024-05-15 22:14:16] total 824612
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas    467845 May 15 16:11 pilot3.tar.gz
[2024-05-15 22:14:16] -rwx------ 1 boincer umatlas     32251 May 15 16:36 runpilot2-wrapper.sh
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas      5633 May 15 16:36 queuedata.json
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas       100 May 15 20:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 22:14:16] -rwxr-xr-x 1 boincer umatlas      7986 May 15 20:33 run_atlas
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas       105 May 15 20:33 job.xml
[2024-05-15 22:14:16] -rw-r--r-- 2 boincer umatlas 602752696 May 15 20:33 EVNT.38776100._000342.pool.root.1
[2024-05-15 22:14:16] -rw-r--r-- 2 boincer umatlas     17537 May 15 20:33 start_atlas.sh
[2024-05-15 22:14:16] drwxrwx--x 2 boincer umatlas      4096 May 15 20:33 shared
[2024-05-15 22:14:16] -rw-r--r-- 2 boincer umatlas    479997 May 15 20:33 input.tar.gz
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas         0 May 15 20:33 boinc_lockfile
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas      2640 May 15 20:33 pandaJob.out
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas       461 May 15 20:33 setup.sh.local
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas   1011347 May 15 20:34 agis_schedconf.cvmfs.json
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas         0 May 15 20:34 agis_ddmendpoints.agis.ALL.json
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas   1324701 May 15 20:34 cric_ddmendpoints.json
[2024-05-15 22:14:16] drwx------ 4 boincer umatlas      4096 May 15 20:34 pilot3
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas      9220 May 15 22:10 init_data.xml
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas 236257787 May 15 22:12 HITS.38776104._008548.pool.root.1
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas       531 May 15 22:13 boinc_task_state.xml
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas        95 May 15 22:13 pilot_heartbeat.json
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas      1051 May 15 22:13 memory_monitor_summary.json
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas    326626 May 15 22:13 log.38776104._008548.job.log.tgz.1
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas      7753 May 15 22:13 heartbeat.json
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas        27 May 15 22:14 wrapper_checkpoint.txt
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas      8192 May 15 22:14 boinc_mmap_file
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas      4213 May 15 22:14 pilotlog.txt
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas    603011 May 15 22:14 log.38776104._008548.job.log.1
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas       357 May 15 22:14 output.list
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas       620 May 15 22:14 runtime_log
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas    952320 May 15 22:14 result.tar.gz
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas       645 May 15 22:14 TtVMDm3XaR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmGmJKDmQ92qCn.diag
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas     11381 May 15 22:14 runtime_log.err
[2024-05-15 22:14:16] -rw-r--r-- 1 boincer umatlas     22478 May 15 22:14 stderr.txt
[2024-05-15 22:14:16] HITS file was successfully produced:
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas 236257787 May 15 22:12 shared/HITS.pool.root.1
[2024-05-15 22:14:16]  *** Contents of shared directory: ***
[2024-05-15 22:14:16] total 820784
[2024-05-15 22:14:16] -rw-r--r-- 2 boincer umatlas 602752696 May 15 20:33 ATLAS.root_0
[2024-05-15 22:14:16] -rw-r--r-- 2 boincer umatlas     17537 May 15 20:33 start_atlas.sh
[2024-05-15 22:14:16] -rw-r--r-- 2 boincer umatlas    479997 May 15 20:33 input.tar.gz
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas 236257787 May 15 22:12 HITS.pool.root.1
[2024-05-15 22:14:16] -rw------- 1 boincer umatlas    952320 May 15 22:14 result.tar.gz
22:14:17 (1227753): run_atlas exited; CPU time 36904.666515
22:14:17 (1227753): called boinc_finish(0)

</stderr_txt>
]]>

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