Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
20:00:07 (261679): wrapper (7.7.26015): starting
20:00:07 (261679): wrapper: running run_atlas (--nthreads 12)
[2024-05-16 20:00:07] Arguments: --nthreads 12
[2024-05-16 20:00:07] Threads: 12
[2024-05-16 20:00:07] Checking for CVMFS
[2024-05-16 20:00:08] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-16 20:00:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-16 20:00:08] Running cvmfs_config stat atlas.cern.ch
[2024-05-16 20:00:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-16 20:00:08] 2.10.1.0 2766 171740 176704 132822 3 275 44169915 45568001 4309 130560 0 580475279 99.770 358703470 12322 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-16 20:00:08] CVMFS is ok
[2024-05-16 20:00:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 20:00:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 20:00:08] Further information can be found at the LHC@home message board.
[2024-05-16 20:00:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 20:00:08] Checking for apptainer binary...
[2024-05-16 20:00:08] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-16 20:00:08] Running /usr/bin/apptainer --version
[2024-05-16 20:00:08] apptainer version 1.1.8-1.el7
[2024-05-16 20:00:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 20:00:09] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0085.triumf.lcg
[2024-05-16 20:00:09] apptainer works
[2024-05-16 20:00:09] Set ATHENA_PROC_NUMBER=12
[2024-05-16 20:00:09] Set ATHENA_CORE_NUMBER=12
[2024-05-16 20:00:09] Starting ATLAS job with PandaID=6206925961
[2024-05-16 20:00:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 20:52:21]  *** The last 200 lines of the pilot log: ***
[2024-05-16 20:52:21]  domain=
[2024-05-16 20:52:21]  filesize=358989
[2024-05-16 20:52:21]  filetype=log
[2024-05-16 20:52:21]  guid=0324706f-c309-43a1-b1a3-1e1d14dc0951
[2024-05-16 20:52:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-16 20:52:21]  is_tar=False
[2024-05-16 20:52:21]  lfn=log.38776104._008425.job.log.tgz.1
[2024-05-16 20:52:21]  mtime=0
[2024-05-16 20:52:21]  protocol_id=None
[2024-05-16 20:52:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-16 20:52:21]  replicas=None
[2024-05-16 20:52:21]  scope=mc23_13p6TeV
[2024-05-16 20:52:21]  status=None
[2024-05-16 20:52:21]  status_code=0
[2024-05-16 20:52:21]  storage_token=
[2024-05-16 20:52:21]  surl=/home/boinc/slots/0/PanDA_Pilot-6206925961/log.38776104._008425.job.log.tgz.1
[2024-05-16 20:52:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/76/log.38776104._008425.job.log.tgz.1
[2024-05-16 20:52:21]  workdir=None
[2024-05-16 20:52:21] ]
[2024-05-16 20:52:21] 2024-05-17 03:51:56,461 | INFO     | transferring file log.38776104._008425.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6206925961/log.38776104._008425.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-16 20:52:21] 2024-05-17 03:51:56,461 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6206925961/log.38776104._008425.job.log.tgz.1 /home/boinc/slots/0/log.38776104._008425.job.log.t
[2024-05-16 20:52:21] 2024-05-17 03:51:56,490 | INFO     | adding to output.list: log.38776104._008425.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/76/log.38776104._008425.job.log.tg
[2024-05-16 20:52:21] 2024-05-17 03:51:56,490 | INFO     | summary of transferred files:
[2024-05-16 20:52:21] 2024-05-17 03:51:56,490 | INFO     |  -- lfn=log.38776104._008425.job.log.tgz.1, status_code=0, status=transferred
[2024-05-16 20:52:21] 2024-05-17 03:51:56,490 | INFO     | stage-out finished correctly
[2024-05-16 20:52:21] 2024-05-17 03:51:56,905 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-16 20:52:21] 2024-05-17 03:51:56,995 | INFO     | job 6206925961 has state=finished
[2024-05-16 20:52:21] 2024-05-17 03:51:56,995 | INFO     | preparing for final server update for job 6206925961 in state='finished'
[2024-05-16 20:52:21] 2024-05-17 03:51:56,996 | INFO     | this job has now completed (state=finished)
[2024-05-16 20:52:21] 2024-05-17 03:51:56,996 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 20:52:21] 2024-05-17 03:51:56,996 | INFO     | job 6206925961 has finished - writing final server update
[2024-05-16 20:52:21] 2024-05-17 03:51:56,997 | INFO     | total number of processed events: 400 (read)
[2024-05-16 20:52:21] 2024-05-17 03:51:57,003 | INFO     | executing command: lscpu
[2024-05-16 20:52:21] 2024-05-17 03:51:57,073 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-16 20:52:21] 2024-05-17 03:51:57,073 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 20:52:21] 2024-05-17 03:51:57,136 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 20:52:21] 2024-05-17 03:51:58,022 | INFO     | monitor loop #246: job 0:6206925961 is in state 'finished'
[2024-05-16 20:52:21] 2024-05-17 03:51:58,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 20:52:21] 2024-05-17 03:52:00,525 | INFO     | monitor loop #247: job 0:6206925961 is in state 'finished'
[2024-05-16 20:52:21] 2024-05-17 03:52:00,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 20:52:21] 2024-05-17 03:52:01,320 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-16 20:52:21] 2024-05-17 03:52:01,320 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6206925961/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 20:52:21] 2024-05-17 03:52:01,322 | INFO     | extracted standard info from prmon json
[2024-05-16 20:52:21] 2024-05-17 03:52:01,322 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 20:52:21] 2024-05-17 03:52:01,322 | WARNING  | GPU info not found in prmon json
[2024-05-16 20:52:21] 2024-05-17 03:52:01,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-16 20:52:21] 2024-05-17 03:52:01,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-16 20:52:21] 2024-05-17 03:52:01,325 | INFO     | fitting pss+swap vs Time
[2024-05-16 20:52:21] 2024-05-17 03:52:01,326 | INFO     | model: linear, x: [1715915151.0, 1715915212.0, 1715915273.0, 1715915334.0, 1715915395.0, 1715915456.0, 1715915517.0, 1715915578.0, 1715915639.0, 1715915700.0, 1715
[2024-05-16 20:52:21] 2024-05-17 03:52:01,326 | INFO     | sum of square deviations: 26400495.0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,326 | INFO     | sum of deviations: 12384375855.0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,326 | INFO     | mean x: 1715916462.5
[2024-05-16 20:52:21] 2024-05-17 03:52:01,327 | INFO     | mean y: 2491212.6818181816
[2024-05-16 20:52:21] 2024-05-17 03:52:01,327 | INFO     | -- intersect: -804927659050.8649
[2024-05-16 20:52:21] 2024-05-17 03:52:01,327 | INFO     | intersect: -804927659050.8649
[2024-05-16 20:52:21] 2024-05-17 03:52:01,327 | INFO     | chi2: 1.580360403953028
[2024-05-16 20:52:21] 2024-05-17 03:52:01,327 | INFO     | -- intersect: -804927659050.8649
[2024-05-16 20:52:21] 2024-05-17 03:52:01,327 | INFO     | current memory leak: 469.10 B/s (using 44 data points, chi2=1.58)
[2024-05-16 20:52:21] 2024-05-17 03:52:01,328 | INFO     | ..............................
[2024-05-16 20:52:21] 2024-05-17 03:52:01,328 | INFO     | . Timing measurements:
[2024-05-16 20:52:21] 2024-05-17 03:52:01,328 | INFO     | . get job = 0 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,328 | INFO     | . initial setup = 1 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,328 | INFO     | . payload setup = 6 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,329 | INFO     | . stage-in = 0 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,329 | INFO     | . payload execution = 3068 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,329 | INFO     | . stage-out = 0 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,329 | INFO     | . log creation = 0 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,329 | INFO     | ..............................
[2024-05-16 20:52:21] 2024-05-17 03:52:01,674 | INFO     | 
[2024-05-16 20:52:21] 2024-05-17 03:52:01,674 | INFO     | job summary report
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | --------------------------------------------------
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | PanDA job id: 6206925961
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | task id: 38776104
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | errors: (none)
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | pilot state: finished 
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | transexitcode: 0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,675 | INFO     | exeerrorcode: 0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | exeerrordiag: 
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | exitcode: 0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | exitmsg: OK
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | cpuconsumptiontime: 26596 s
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | nevents: 400
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | neventsw: 0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | pid: 272321
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | pgrp: 272321
[2024-05-16 20:52:21] 2024-05-17 03:52:01,676 | INFO     | corecount: 12
[2024-05-16 20:52:21] 2024-05-17 03:52:01,677 | INFO     | event service: False
[2024-05-16 20:52:21] 2024-05-17 03:52:01,677 | INFO     | sizes: {0: 2392027, 1: 2392226, 5: 2392432, 11: 2392488, 3077: 2417887, 3078: 2417886, 3080: 2427080, 3085: 2427194}
[2024-05-16 20:52:21] 2024-05-17 03:52:01,677 | INFO     | --------------------------------------------------
[2024-05-16 20:52:21] 2024-05-17 03:52:01,677 | INFO     | 
[2024-05-16 20:52:21] 2024-05-17 03:52:01,677 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-16 20:52:21] 2024-05-17 03:52:01,709 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,710 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,710 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,710 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,710 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,710 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,712 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 20:52:21] 2024-05-17 03:52:01,713 | INFO     | job 6206925961 has completed (purged errors)
[2024-05-16 20:52:21] 2024-05-17 03:52:01,713 | INFO     | overall cleanup function is called
[2024-05-16 20:52:21] 2024-05-17 03:52:02,722 | INFO     | --- collectZombieJob: --- 10, [272321]
[2024-05-16 20:52:21] 2024-05-17 03:52:02,723 | INFO     | zombie collector waiting for pid 272321
[2024-05-16 20:52:21] 2024-05-17 03:52:02,723 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 20:52:21] 2024-05-17 03:52:03,728 | INFO     | collected zombie processes
[2024-05-16 20:52:21] 2024-05-17 03:52:03,728 | INFO     | will now attempt to kill all subprocesses of pid=272321
[2024-05-16 20:52:21] 2024-05-17 03:52:03,855 | INFO     | process IDs to be killed: [272321] (in reverse order)
[2024-05-16 20:52:21] 2024-05-17 03:52:03,979 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 20:52:21] 2024-05-17 03:52:03,980 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 20:52:21] 2024-05-17 03:52:03,987 | INFO     | did not find any defunct processes belonging to 272321
[2024-05-16 20:52:21] 2024-05-17 03:52:03,993 | INFO     | did not find any defunct processes belonging to 272321
[2024-05-16 20:52:21] 2024-05-17 03:52:03,993 | INFO     | ready for new job
[2024-05-16 20:52:21] 2024-05-17 03:52:03,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 20:52:21] 2024-05-17 03:52:03,995 | INFO     | *************************************
[2024-05-16 20:52:21] 2024-05-17 03:52:03,995 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 20:52:21] 2024-05-17 03:52:03,995 | INFO     | *************************************
[2024-05-16 20:52:21] 2024-05-17 03:52:03,996 | INFO     | 
[2024-05-16 20:52:21] 2024-05-17 03:52:04,000 | INFO     | architecture information:
[2024-05-16 20:52:21] 2024-05-17 03:52:04,000 | INFO     | executing command: cat /etc/os-release
[2024-05-16 20:52:21] 2024-05-17 03:52:04,023 | INFO     | cat /etc/os-release:
[2024-05-16 20:52:21] NAME="CentOS Linux"
[2024-05-16 20:52:21] VERSION="7 (Core)"
[2024-05-16 20:52:21] ID="centos"
[2024-05-16 20:52:21] ID_LIKE="rhel fedora"
[2024-05-16 20:52:21] VERSION_ID="7"
[2024-05-16 20:52:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 20:52:21] ANSI_COLOR="0;31"
[2024-05-16 20:52:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 20:52:21] HOME_URL="https://www.centos.org/"
[2024-05-16 20:52:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 20:52:21] 
[2024-05-16 20:52:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 20:52:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 20:52:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 20:52:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 20:52:21] 
[2024-05-16 20:52:21] 2024-05-17 03:52:04,023 | INFO     | *************************************
[2024-05-16 20:52:21] 2024-05-17 03:52:04,527 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-16 20:52:21] 2024-05-17 03:52:04,555 | INFO     | sufficient remaining disk space (2235251556352 B)
[2024-05-16 20:52:21] 2024-05-17 03:52:04,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 20:52:21] 2024-05-17 03:52:04,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 20:52:21] 2024-05-17 03:52:04,556 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-16 20:52:21] 2024-05-17 03:52:04,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 20:52:21] 2024-05-17 03:52:04,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 20:52:21] 2024-05-17 03:52:04,557 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 20:52:21] 2024-05-17 03:52:04,558 | INFO     | aborting loop
[2024-05-16 20:52:21] 2024-05-17 03:52:04,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 20:52:21] 2024-05-17 03:52:04,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 20:52:21] 2024-05-17 03:52:04,627 | INFO     | all data control threads have been joined
[2024-05-16 20:52:21] 2024-05-17 03:52:05,116 | INFO     | all job control threads have been joined
[2024-05-16 20:52:21] 2024-05-17 03:52:05,230 | INFO     | all payload control threads have been joined
[2024-05-16 20:52:21] 2024-05-17 03:52:05,559 | INFO     | [job] job monitor thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:05,561 | INFO     | [job] retrieve thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:05,574 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:05,633 | INFO     | [data] control thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:05,698 | INFO     | [job] validate thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:05,894 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:05,969 | INFO     | [data] copytool_in thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:06,019 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:06,122 | INFO     | [job] control thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:06,151 | INFO     | [payload] failed_post thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:06,235 | INFO     | [payload] control thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:06,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 20:52:21] 2024-05-17 03:52:06,564 | INFO     | [data] copytool_out thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:06,656 | INFO     | [payload] validate_post thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:07,442 | INFO     | [job] queue monitor thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:07,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 20:52:21] 2024-05-17 03:52:11,516 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:14,633 | INFO     | job.realtimelogging is not enabled
[2024-05-16 20:52:21] 2024-05-17 03:52:15,639 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 20:52:21] 2024-05-17 03:52:15,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140566187579200)>', '<ExcThread(monitor, started 140565907740416)>']
[2024-05-16 20:52:21] 2024-05-17 03:52:16,623 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 20:52:21] 2024-05-17 03:52:16,623 | INFO     | [monitor] control thread has ended
[2024-05-16 20:52:21] 2024-05-17 03:52:20,702 | INFO     | all workflow threads have been joined
[2024-05-16 20:52:21] 2024-05-17 03:52:20,703 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 20:52:21] 2024-05-17 03:52:20,703 | INFO     | traces error code: 0
[2024-05-16 20:52:21] 2024-05-17 03:52:20,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 20:52:21] 2024-05-17 03:52:20,830 [wrapper] ==== pilot stdout END ====
[2024-05-16 20:52:21] 2024-05-17 03:52:20,834 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 20:52:21] 2024-05-17 03:52:20,838 [wrapper] pilotpid: 265909
[2024-05-16 20:52:21] 2024-05-17 03:52:20,843 [wrapper] Pilot exit status: 0
[2024-05-16 20:52:21] 2024-05-17 03:52:20,856 [wrapper] pandaids: 6206925961
[2024-05-16 20:52:21] 2024-05-17 03:52:20,924 [wrapper] cleanup: SIGTERM to supervisor_pilot  24790 265910
[2024-05-16 20:52:21] 2024-05-17 03:52:20,929 [wrapper] Test setup, not cleaning
[2024-05-16 20:52:21] 2024-05-17 03:52:20,933 [wrapper] ==== wrapper stdout END ====
[2024-05-16 20:52:21] 2024-05-17 03:52:20,937 [wrapper] ==== wrapper stderr END ====
[2024-05-16 20:52:21] 2024-05-17 03:52:20,944 [wrapper] apfmon messages muted
[2024-05-16 20:52:21]  *** Error codes and diagnostics ***
[2024-05-16 20:52:21]     "exeErrorCode": 0,
[2024-05-16 20:52:21]     "exeErrorDiag": "",
[2024-05-16 20:52:21]     "pilotErrorCode": 0,
[2024-05-16 20:52:21]     "pilotErrorDiag": "",
[2024-05-16 20:52:21]  *** Listing of results directory ***
[2024-05-16 20:52:21] total 824028
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc    467845 May 15 13:11 pilot3.tar.gz
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc      5633 May 15 13:25 queuedata.json
[2024-05-16 20:52:21] -rwx------ 1 boinc boinc     32251 May 15 13:26 runpilot2-wrapper.sh
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc       100 May 16 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 20:52:21] -rwxr-xr-x 1 boinc boinc      7986 May 16 20:00 run_atlas
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc       105 May 16 20:00 job.xml
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc      6628 May 16 20:00 init_data.xml
[2024-05-16 20:52:21] -rw-r--r-- 2 boinc boinc 605704622 May 16 20:00 EVNT.38776100._000337.pool.root.1
[2024-05-16 20:52:21] -rw-r--r-- 2 boinc boinc     17537 May 16 20:00 start_atlas.sh
[2024-05-16 20:52:21] drwxrwx--x 2 boinc boinc      4096 May 16 20:00 shared
[2024-05-16 20:52:21] -rw-r--r-- 2 boinc boinc    480001 May 16 20:00 input.tar.gz
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc         0 May 16 20:00 boinc_lockfile
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc      2640 May 16 20:00 pandaJob.out
[2024-05-16 20:52:21] -rw------- 1 boinc boinc       424 May 16 20:00 setup.sh.local
[2024-05-16 20:52:21] -rw------- 1 boinc boinc   1019310 May 16 20:00 agis_schedconf.cvmfs.json
[2024-05-16 20:52:21] -rw------- 1 boinc boinc         0 May 16 20:00 agis_ddmendpoints.agis.ALL.json
[2024-05-16 20:52:21] -rw------- 1 boinc boinc   1324701 May 16 20:00 cric_ddmendpoints.json
[2024-05-16 20:52:21] drwx------ 4 boinc boinc      4096 May 16 20:00 pilot3
[2024-05-16 20:52:21] -rw------- 1 boinc boinc 233189937 May 16 20:51 HITS.38776104._008425.pool.root.1
[2024-05-16 20:52:21] -rw------- 1 boinc boinc        95 May 16 20:51 pilot_heartbeat.json
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc       530 May 16 20:51 boinc_task_state.xml
[2024-05-16 20:52:21] -rw------- 1 boinc boinc      1041 May 16 20:51 memory_monitor_summary.json
[2024-05-16 20:52:21] -rw------- 1 boinc boinc    358989 May 16 20:51 log.38776104._008425.job.log.tgz.1
[2024-05-16 20:52:21] -rw------- 1 boinc boinc      7755 May 16 20:52 heartbeat.json
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc      8192 May 16 20:52 boinc_mmap_file
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc        27 May 16 20:52 wrapper_checkpoint.txt
[2024-05-16 20:52:21] -rw------- 1 boinc boinc      4405 May 16 20:52 pilotlog.txt
[2024-05-16 20:52:21] -rw------- 1 boinc boinc    326556 May 16 20:52 log.38776104._008425.job.log.1
[2024-05-16 20:52:21] -rw------- 1 boinc boinc       357 May 16 20:52 output.list
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc       620 May 16 20:52 runtime_log
[2024-05-16 20:52:21] -rw------- 1 boinc boinc    706560 May 16 20:52 result.tar.gz
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc     11286 May 16 20:52 runtime_log.err
[2024-05-16 20:52:21] -rw------- 1 boinc boinc       651 May 16 20:52 eSyLDmzNaR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmPkOKDmsUgiUo.diag
[2024-05-16 20:52:21] -rw-r--r-- 1 boinc boinc     21536 May 16 20:52 stderr.txt
[2024-05-16 20:52:21] HITS file was successfully produced:
[2024-05-16 20:52:21] -rw------- 1 boinc boinc 233189937 May 16 20:51 shared/HITS.pool.root.1
[2024-05-16 20:52:21]  *** Contents of shared directory: ***
[2024-05-16 20:52:21] total 820432
[2024-05-16 20:52:21] -rw-r--r-- 2 boinc boinc 605704622 May 16 20:00 ATLAS.root_0
[2024-05-16 20:52:21] -rw-r--r-- 2 boinc boinc     17537 May 16 20:00 start_atlas.sh
[2024-05-16 20:52:21] -rw-r--r-- 2 boinc boinc    480001 May 16 20:00 input.tar.gz
[2024-05-16 20:52:21] -rw------- 1 boinc boinc 233189937 May 16 20:51 HITS.pool.root.1
[2024-05-16 20:52:21] -rw------- 1 boinc boinc    706560 May 16 20:52 result.tar.gz
20:52:23 (261679): run_atlas exited; CPU time 26536.942575
20:52:23 (261679): called boinc_finish(0)

</stderr_txt>
]]>

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