Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:21:55 (1556348): wrapper (7.7.26015): starting
03:21:55 (1556348): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 03:21:55] Arguments: --nthreads 4
[2024-05-20 03:21:55] Threads: 4
[2024-05-20 03:21:55] Checking for CVMFS
[2024-05-20 03:21:55] No cvmfs_config command found, will try listing directly
[2024-05-20 03:21:55] CVMFS is ok
[2024-05-20 03:21:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 03:21:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 03:21:55] Further information can be found at the LHC@home message board.
[2024-05-20 03:21:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 03:21:55] Checking for apptainer binary...
[2024-05-20 03:21:55] which: no apptainer in ((null))
[2024-05-20 03:21:55] apptainer is not installed, using version from CVMFS
[2024-05-20 03:21:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 03:21:56] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2024-05-20 03:21:56] apptainer works
[2024-05-20 03:21:56] Set ATHENA_PROC_NUMBER=4
[2024-05-20 03:21:56] Set ATHENA_CORE_NUMBER=4
[2024-05-20 03:21:56] Starting ATLAS job with PandaID=6206904177
[2024-05-20 03:21:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 05:34:58]  *** The last 200 lines of the pilot log: ***
[2024-05-20 05:34:58] 2024-05-20 03:34:43,377 | INFO     | model: linear, x: [1716168151.0, 1716168212.0, 1716168273.0, 1716168334.0, 1716168395.0, 1716168456.0, 1716168517.0, 1716168578.0, 1716168639.0, 1716168700.0, 1716
[2024-05-20 05:34:58] 2024-05-20 03:34:43,377 | INFO     | sum of square deviations: 605592750.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,378 | INFO     | sum of deviations: 49254667831.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,378 | INFO     | mean x: 1716171933.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,378 | INFO     | mean y: 2250207.28
[2024-05-20 05:34:58] 2024-05-20 03:34:43,379 | INFO     | -- intersect: -139579140918.68738
[2024-05-20 05:34:58] 2024-05-20 03:34:43,379 | INFO     | intersect: -139579140918.68738
[2024-05-20 05:34:58] 2024-05-20 03:34:43,379 | INFO     | chi2: 4.085457095093194
[2024-05-20 05:34:58] 2024-05-20 03:34:43,379 | INFO     | current chi2=4.085457095093194 (change=0.08379258548474493 %)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,379 | INFO     | right removable region: 124
[2024-05-20 05:34:58] 2024-05-20 03:34:43,379 | INFO     | model: linear, x: [1716168456.0, 1716168517.0, 1716168578.0, 1716168639.0, 1716168700.0, 1716168761.0, 1716168822.0, 1716168883.0, 1716168944.0, 1716169005.0, 1716
[2024-05-20 05:34:58] 2024-05-20 03:34:43,380 | INFO     | sum of square deviations: 605592750.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,380 | INFO     | sum of deviations: 21996656791.000004
[2024-05-20 05:34:58] 2024-05-20 03:34:43,380 | INFO     | mean x: 1716172238.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,380 | INFO     | mean y: 2313356.336
[2024-05-20 05:34:58] 2024-05-20 03:34:43,381 | INFO     | -- intersect: -62333392798.548416
[2024-05-20 05:34:58] 2024-05-20 03:34:43,381 | INFO     | intersect: -62333392798.548416
[2024-05-20 05:34:58] 2024-05-20 03:34:43,381 | INFO     | chi2: 1.5706319015181993
[2024-05-20 05:34:58] 2024-05-20 03:34:43,381 | INFO     | current chi2=1.5706319015181993 (change=61.58775402820205 %)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,381 | INFO     | model: linear, x: [1716168761.0, 1716168822.0, 1716168883.0, 1716168944.0, 1716169005.0, 1716169066.0, 1716169127.0, 1716169188.0, 1716169249.0, 1716169310.0, 1716
[2024-05-20 05:34:58] 2024-05-20 03:34:43,381 | INFO     | sum of square deviations: 535786790.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,382 | INFO     | sum of deviations: -1558508977.4999993
[2024-05-20 05:34:58] 2024-05-20 03:34:43,382 | INFO     | mean x: 1716172390.5
[2024-05-20 05:34:58] 2024-05-20 03:34:43,382 | INFO     | mean y: 2364840.6416666666
[2024-05-20 05:34:58] 2024-05-20 03:34:43,382 | INFO     | -- intersect: 4994406689.101357
[2024-05-20 05:34:58] 2024-05-20 03:34:43,383 | INFO     | intersect: 4994406689.101357
[2024-05-20 05:34:58] 2024-05-20 03:34:43,383 | INFO     | chi2: 0.06850699995013532
[2024-05-20 05:34:58] 2024-05-20 03:34:43,383 | INFO     | current chi2=0.06850699995013532 (change=95.63825235665242 %)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,383 | INFO     | model: linear, x: [1716169066.0, 1716169127.0, 1716169188.0, 1716169249.0, 1716169310.0, 1716169371.0, 1716169432.0, 1716169493.0, 1716169554.0, 1716169615.0, 1716
[2024-05-20 05:34:58] 2024-05-20 03:34:43,383 | INFO     | sum of square deviations: 471562330.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,384 | INFO     | sum of deviations: -4613036550.000001
[2024-05-20 05:34:58] 2024-05-20 03:34:43,384 | INFO     | mean x: 1716172543.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,384 | INFO     | mean y: 2371935.7739130436
[2024-05-20 05:34:58] 2024-05-20 03:34:43,384 | INFO     | -- intersect: 16790749978.959524
[2024-05-20 05:34:58] 2024-05-20 03:34:43,384 | INFO     | intersect: 16790749978.959524
[2024-05-20 05:34:58] 2024-05-20 03:34:43,385 | INFO     | chi2: 0.010158113179337897
[2024-05-20 05:34:58] 2024-05-20 03:34:43,385 | INFO     | current chi2=0.010158113179337897 (change=85.17215293804756 %)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,385 | INFO     | model: linear, x: [1716169371.0, 1716169432.0, 1716169493.0, 1716169554.0, 1716169615.0, 1716169676.0, 1716169737.0, 1716169798.0, 1716169859.0, 1716169920.0, 1716
[2024-05-20 05:34:58] 2024-05-20 03:34:43,385 | INFO     | sum of square deviations: 412686807.5
[2024-05-20 05:34:58] 2024-05-20 03:34:43,386 | INFO     | sum of deviations: -3783565686.9999995
[2024-05-20 05:34:58] 2024-05-20 03:34:43,386 | INFO     | mean x: 1716172695.5
[2024-05-20 05:34:58] 2024-05-20 03:34:43,386 | INFO     | mean y: 2369776.727272727
[2024-05-20 05:34:58] 2024-05-20 03:34:43,386 | INFO     | -- intersect: 15736461600.489046
[2024-05-20 05:34:58] 2024-05-20 03:34:43,386 | INFO     | intersect: 15736461600.489046
[2024-05-20 05:34:58] 2024-05-20 03:34:43,386 | INFO     | chi2: 0.009859944643070306
[2024-05-20 05:34:58] 2024-05-20 03:34:43,387 | INFO     | current chi2=0.009859944643070306 (change=2.9352747995964474 %)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,387 | INFO     | left removable region: 40
[2024-05-20 05:34:58] 2024-05-20 03:34:43,387 | INFO     | model: linear, x: [1716170591.0, 1716170652.0, 1716170713.0, 1716170774.0, 1716170835.0, 1716170896.0, 1716170957.0, 1716171018.0, 1716171079.0, 1716171140.0, 1716
[2024-05-20 05:34:58] 2024-05-20 03:34:43,387 | INFO     | sum of square deviations: 183761585.0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,387 | INFO     | sum of deviations: 32528158.500000045
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | mean x: 1716173122.5
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | mean y: 2356868.6785714286
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | -- intersect: -301427795.24952865
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | intersect: -301427795.24952865
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | chi2: 0.0017891639626116595
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | -- intersect: -301427795.24952865
[2024-05-20 05:34:58] 2024-05-20 03:34:43,388 | INFO     | current memory leak: 0.18 B/s (using 84 data points, chi2=0.00)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | ..............................
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . Timing measurements:
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . get job = 0 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . initial setup = 1 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . payload setup = 5 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . stage-in = 0 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . payload execution = 7923 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . stage-out = 0 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | . log creation = 0 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,389 | INFO     | ..............................
[2024-05-20 05:34:58] 2024-05-20 03:34:43,500 | INFO     | 
[2024-05-20 05:34:58] 2024-05-20 03:34:43,500 | INFO     | job summary report
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | --------------------------------------------------
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | PanDA job id: 6206904177
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | task id: 38776104
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | errors: (none)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | pilot state: finished 
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | transexitcode: 0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | exeerrorcode: 0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | exeerrordiag: 
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | exitcode: 0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | exitmsg: OK
[2024-05-20 05:34:58] 2024-05-20 03:34:43,501 | INFO     | cpuconsumptiontime: 28900 s
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | nevents: 400
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | neventsw: 0
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | pid: 1568561
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | pgrp: 1568561
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | corecount: 4
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | event service: False
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | sizes: {0: 2392210, 5: 2392416, 11: 2392472, 7932: 2420145, 7933: 2429182, 7936: 2429182, 7942: 2429480}
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | --------------------------------------------------
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | 
[2024-05-20 05:34:58] 2024-05-20 03:34:43,502 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/1
[2024-05-20 05:34:58] 2024-05-20 03:34:43,580 | WARNING  | process 1568561 is no longer using CPU - aborting
[2024-05-20 05:34:58] 2024-05-20 03:34:43,580 | INFO     | aborting job monitoring since job object (job id=6206904177) has expired
[2024-05-20 05:34:58] 2024-05-20 03:34:43,595 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,595 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,595 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | job 6206904177 has completed (purged errors)
[2024-05-20 05:34:58] 2024-05-20 03:34:43,597 | INFO     | overall cleanup function is called
[2024-05-20 05:34:58] 2024-05-20 03:34:44,604 | INFO     | --- collectZombieJob: --- 10, [1568561]
[2024-05-20 05:34:58] 2024-05-20 03:34:44,604 | INFO     | zombie collector waiting for pid 1568561
[2024-05-20 05:34:58] 2024-05-20 03:34:44,604 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 05:34:58] 2024-05-20 03:34:45,610 | INFO     | collected zombie processes
[2024-05-20 05:34:58] 2024-05-20 03:34:45,610 | INFO     | will now attempt to kill all subprocesses of pid=1568561
[2024-05-20 05:34:58] 2024-05-20 03:34:45,815 | INFO     | process IDs to be killed: [1568561] (in reverse order)
[2024-05-20 05:34:58] 2024-05-20 03:34:45,965 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 05:34:58] 2024-05-20 03:34:45,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 05:34:58] 2024-05-20 03:34:45,985 | INFO     | did not find any defunct processes belonging to 1568561
[2024-05-20 05:34:58] 2024-05-20 03:34:46,000 | INFO     | did not find any defunct processes belonging to 1568561
[2024-05-20 05:34:58] 2024-05-20 03:34:46,000 | INFO     | ready for new job
[2024-05-20 05:34:58] 2024-05-20 03:34:46,000 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 05:34:58] 2024-05-20 03:34:46,002 | INFO     | *************************************
[2024-05-20 05:34:58] 2024-05-20 03:34:46,002 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 05:34:58] 2024-05-20 03:34:46,002 | INFO     | *************************************
[2024-05-20 05:34:58] 2024-05-20 03:34:46,003 | INFO     | 
[2024-05-20 05:34:58] 2024-05-20 03:34:46,009 | INFO     | architecture information:
[2024-05-20 05:34:58] 2024-05-20 03:34:46,009 | INFO     | executing command: cat /etc/os-release
[2024-05-20 05:34:58] 2024-05-20 03:34:46,033 | INFO     | cat /etc/os-release:
[2024-05-20 05:34:58] NAME="CentOS Linux"
[2024-05-20 05:34:58] VERSION="7 (Core)"
[2024-05-20 05:34:58] ID="centos"
[2024-05-20 05:34:58] ID_LIKE="rhel fedora"
[2024-05-20 05:34:58] VERSION_ID="7"
[2024-05-20 05:34:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 05:34:58] ANSI_COLOR="0;31"
[2024-05-20 05:34:58] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 05:34:58] HOME_URL="https://www.centos.org/"
[2024-05-20 05:34:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 05:34:58] 
[2024-05-20 05:34:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 05:34:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 05:34:58] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 05:34:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 05:34:58] 
[2024-05-20 05:34:58] 2024-05-20 03:34:46,034 | INFO     | *************************************
[2024-05-20 05:34:58] 2024-05-20 03:34:46,537 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/1
[2024-05-20 05:34:58] 2024-05-20 03:34:46,564 | INFO     | sufficient remaining disk space (3017617178624 B)
[2024-05-20 05:34:58] 2024-05-20 03:34:46,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 05:34:58] 2024-05-20 03:34:46,564 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 05:34:58] 2024-05-20 03:34:46,565 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 05:34:58] 2024-05-20 03:34:46,565 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 05:34:58] 2024-05-20 03:34:46,565 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 05:34:58] 2024-05-20 03:34:46,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 05:34:58] 2024-05-20 03:34:46,642 | INFO     | all data control threads have been joined
[2024-05-20 05:34:58] 2024-05-20 03:34:46,769 | INFO     | all payload control threads have been joined
[2024-05-20 05:34:58] 2024-05-20 03:34:47,088 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 05:34:58] 2024-05-20 03:34:47,089 | INFO     | aborting loop
[2024-05-20 05:34:58] 2024-05-20 03:34:47,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 05:34:58] 2024-05-20 03:34:47,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 05:34:58] 2024-05-20 03:34:47,570 | INFO     | [job] retrieve thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:47,646 | INFO     | [payload] validate_post thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:47,648 | INFO     | [data] control thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:47,775 | INFO     | [payload] control thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:47,926 | INFO     | all job control threads have been joined
[2024-05-20 05:34:58] 2024-05-20 03:34:48,055 | INFO     | [job] validate thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,056 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,061 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,093 | INFO     | [job] job monitor thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,369 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,374 | INFO     | [data] copytool_in thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,510 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 05:34:58] 2024-05-20 03:34:48,653 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,690 | INFO     | [payload] failed_post thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:48,928 | INFO     | [job] control thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:49,499 | INFO     | [data] copytool_out thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:49,516 | INFO     | [job] queue monitor thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:51,463 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 05:34:58] 2024-05-20 03:34:52,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47285879362624)>', '<ExcThread(monitor, started 47286463784704)>']
[2024-05-20 05:34:58] 2024-05-20 03:34:53,600 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 05:34:58] 2024-05-20 03:34:53,600 | INFO     | [monitor] control thread has ended
[2024-05-20 05:34:58] 2024-05-20 03:34:57,916 | INFO     | all workflow threads have been joined
[2024-05-20 05:34:58] 2024-05-20 03:34:57,917 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 05:34:58] 2024-05-20 03:34:57,917 | INFO     | traces error code: 0
[2024-05-20 05:34:58] 2024-05-20 03:34:57,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 05:34:58] 2024-05-20 03:34:57,983 [wrapper] ==== pilot stdout END ====
[2024-05-20 05:34:58] 2024-05-20 03:34:57,985 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 05:34:58] 2024-05-20 03:34:57,987 [wrapper] pilotpid: 1561015
[2024-05-20 05:34:58] 2024-05-20 03:34:57,989 [wrapper] Pilot exit status: 0
[2024-05-20 05:34:58] 2024-05-20 03:34:57,995 [wrapper] pandaids: 6206904177
[2024-05-20 05:34:58] 2024-05-20 03:34:58,083 [wrapper] cleanup: SIGTERM to supervisor_pilot 2123641 1561016
[2024-05-20 05:34:58] 2024-05-20 03:34:58,086 [wrapper] Test setup, not cleaning
[2024-05-20 05:34:58] 2024-05-20 03:34:58,088 [wrapper] ==== wrapper stdout END ====
[2024-05-20 05:34:58] 2024-05-20 03:34:58,090 [wrapper] ==== wrapper stderr END ====
[2024-05-20 05:34:58] 2024-05-20 03:34:58,094 [wrapper] apfmon messages muted
[2024-05-20 05:34:58]  *** Error codes and diagnostics ***
[2024-05-20 05:34:58]     "exeErrorCode": 0,
[2024-05-20 05:34:58]     "exeErrorDiag": "",
[2024-05-20 05:34:58]     "pilotErrorCode": 0,
[2024-05-20 05:34:58]     "pilotErrorDiag": "",
[2024-05-20 05:34:58]  *** Listing of results directory ***
[2024-05-20 05:34:58] total 822676
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc    467845 May 15 20:25 pilot3.tar.gz
[2024-05-20 05:34:58] -rwx------ 1 boinc boinc     32251 May 15 20:57 runpilot2-wrapper.sh
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc      5633 May 15 20:57 queuedata.json
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc       100 May 20 02:45 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 05:34:58] -rwxr-xr-x 1 boinc boinc      7986 May 20 02:45 run_atlas
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc       105 May 20 02:45 job.xml
[2024-05-20 05:34:58] -rw-r--r-- 2 boinc boinc 602195426 May 20 03:21 EVNT.38776100._000318.pool.root.1
[2024-05-20 05:34:58] -rw-r--r-- 2 boinc boinc     17537 May 20 03:21 start_atlas.sh
[2024-05-20 05:34:58] drwxrwx--x 2 boinc boinc      4096 May 20 03:21 shared
[2024-05-20 05:34:58] -rw-r--r-- 2 boinc boinc    480003 May 20 03:21 input.tar.gz
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc      6644 May 20 03:21 init_data.xml
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc         0 May 20 03:21 boinc_lockfile
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc      2639 May 20 03:21 pandaJob.out
[2024-05-20 05:34:58] -rw------- 1 boinc boinc       424 May 20 03:21 setup.sh.local
[2024-05-20 05:34:58] -rw------- 1 boinc boinc   1013669 May 20 03:22 agis_schedconf.cvmfs.json
[2024-05-20 05:34:58] -rw------- 1 boinc boinc         0 May 20 03:22 agis_ddmendpoints.agis.ALL.json
[2024-05-20 05:34:58] -rw------- 1 boinc boinc   1324701 May 20 03:22 cric_ddmendpoints.json
[2024-05-20 05:34:58] drwx------ 4 boinc boinc      4096 May 20 03:22 pilot3
[2024-05-20 05:34:58] -rw------- 1 boinc boinc 234520843 May 20 05:34 HITS.38776104._007931.pool.root.1
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc       530 May 20 05:34 boinc_task_state.xml
[2024-05-20 05:34:58] -rw------- 1 boinc boinc        95 May 20 05:34 pilot_heartbeat.json
[2024-05-20 05:34:58] -rw------- 1 boinc boinc      1039 May 20 05:34 memory_monitor_summary.json
[2024-05-20 05:34:58] -rw------- 1 boinc boinc    265667 May 20 05:34 log.38776104._007931.job.log.tgz.1
[2024-05-20 05:34:58] -rw------- 1 boinc boinc      7711 May 20 05:34 heartbeat.json
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc        27 May 20 05:34 wrapper_checkpoint.txt
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc      8192 May 20 05:34 boinc_mmap_file
[2024-05-20 05:34:58] -rw------- 1 boinc boinc      4345 May 20 05:34 pilotlog.txt
[2024-05-20 05:34:58] -rw------- 1 boinc boinc    821057 May 20 05:34 log.38776104._007931.job.log.1
[2024-05-20 05:34:58] -rw------- 1 boinc boinc       357 May 20 05:34 output.list
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc       620 May 20 05:34 runtime_log
[2024-05-20 05:34:58] -rw------- 1 boinc boinc   1105920 May 20 05:34 result.tar.gz
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc     11409 May 20 05:34 runtime_log.err
[2024-05-20 05:34:58] -rw------- 1 boinc boinc       654 May 20 05:34 RK9MDmzzYR5n7Olcko1bjSoqABFKDmABFKDmOtvXDmvuYKDmRK76Tn.diag
[2024-05-20 05:34:58] -rw-r--r-- 1 boinc boinc     21410 May 20 05:34 stderr.txt
[2024-05-20 05:34:58] HITS file was successfully produced:
[2024-05-20 05:34:58] -rw------- 1 boinc boinc 234520843 May 20 05:34 shared/HITS.pool.root.1
[2024-05-20 05:34:58]  *** Contents of shared directory: ***
[2024-05-20 05:34:58] total 818692
[2024-05-20 05:34:58] -rw-r--r-- 2 boinc boinc 602195426 May 20 03:21 ATLAS.root_0
[2024-05-20 05:34:58] -rw-r--r-- 2 boinc boinc     17537 May 20 03:21 start_atlas.sh
[2024-05-20 05:34:58] -rw-r--r-- 2 boinc boinc    480003 May 20 03:21 input.tar.gz
[2024-05-20 05:34:58] -rw------- 1 boinc boinc 234520843 May 20 05:34 HITS.pool.root.1
[2024-05-20 05:34:58] -rw------- 1 boinc boinc   1105920 May 20 05:34 result.tar.gz
05:35:00 (1556348): run_atlas exited; CPU time 28705.069821
05:35:00 (1556348): called boinc_finish(0)

</stderr_txt>
]]>

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