Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
12:06:10 (222115): wrapper (7.7.26015): starting
12:06:10 (222115): wrapper: running run_atlas (--nthreads 12)
[2024-05-16 12:06:10] Arguments: --nthreads 12
[2024-05-16 12:06:10] Threads: 12
[2024-05-16 12:06:10] Checking for CVMFS
[2024-05-16 12:06:11] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-16 12:06:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-16 12:06:11] Running cvmfs_config stat atlas.cern.ch
[2024-05-16 12:06:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-16 12:06:11] 2.9.2.0 165920 182327 131396 132810 0 290 45358926 45568001 8577 130560 0 619746391 99.780 414489313 14123 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2024-05-16 12:06:11] CVMFS is ok
[2024-05-16 12:06:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 12:06:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 12:06:11] Further information can be found at the LHC@home message board.
[2024-05-16 12:06:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 12:06:11] Checking for apptainer binary...
[2024-05-16 12:06:11] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-16 12:06:11] Running /usr/bin/apptainer --version
[2024-05-16 12:06:11] apptainer version 1.1.8-1.el7
[2024-05-16 12:06:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 12:06:12] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0038.triumf.lcg
[2024-05-16 12:06:12] apptainer works
[2024-05-16 12:06:12] Set ATHENA_PROC_NUMBER=12
[2024-05-16 12:06:12] Set ATHENA_CORE_NUMBER=12
[2024-05-16 12:06:12] Starting ATLAS job with PandaID=6206904155
[2024-05-16 12:06:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 13:14:54]  *** The last 200 lines of the pilot log: ***
[2024-05-16 13:14:55]  is_tar=False
[2024-05-16 13:14:55]  lfn=log.38776104._007909.job.log.tgz.1
[2024-05-16 13:14:55]  mtime=0
[2024-05-16 13:14:55]  protocol_id=None
[2024-05-16 13:14:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-16 13:14:55]  replicas=None
[2024-05-16 13:14:55]  scope=mc23_13p6TeV
[2024-05-16 13:14:55]  status=None
[2024-05-16 13:14:55]  status_code=0
[2024-05-16 13:14:55]  storage_token=
[2024-05-16 13:14:55]  surl=/home/boinc/slots/0/PanDA_Pilot-6206904155/log.38776104._007909.job.log.tgz.1
[2024-05-16 13:14:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/d1/log.38776104._007909.job.log.tgz.1
[2024-05-16 13:14:55]  workdir=None
[2024-05-16 13:14:55] ]
[2024-05-16 13:14:55] 2024-05-16 20:14:22,184 | INFO     | transferring file log.38776104._007909.job.log.tgz.1 from /home/boinc/slots/0/PanDA_Pilot-6206904155/log.38776104._007909.job.log.tgz.1 to /home/boinc/slots/0/log.
[2024-05-16 13:14:55] 2024-05-16 20:14:22,184 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-6206904155/log.38776104._007909.job.log.tgz.1 /home/boinc/slots/0/log.38776104._007909.job.log.t
[2024-05-16 13:14:55] 2024-05-16 20:14:22,225 | INFO     | adding to output.list: log.38776104._007909.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/51/d1/log.38776104._007909.job.log.tg
[2024-05-16 13:14:55] 2024-05-16 20:14:22,226 | INFO     | summary of transferred files:
[2024-05-16 13:14:55] 2024-05-16 20:14:22,226 | INFO     |  -- lfn=log.38776104._007909.job.log.tgz.1, status_code=0, status=transferred
[2024-05-16 13:14:55] 2024-05-16 20:14:22,226 | INFO     | stage-out finished correctly
[2024-05-16 13:14:55] 2024-05-16 20:14:22,383 | INFO     | monitor loop #285: job 0:6206904155 is in state 'finished'
[2024-05-16 13:14:55] 2024-05-16 20:14:22,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 13:14:55] 2024-05-16 20:14:24,886 | INFO     | monitor loop #286: job 0:6206904155 is in state 'finished'
[2024-05-16 13:14:55] 2024-05-16 20:14:24,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 13:14:55] 2024-05-16 20:14:25,653 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-16 13:14:55] 2024-05-16 20:14:25,702 | INFO     | job 6206904155 has state=finished
[2024-05-16 13:14:55] 2024-05-16 20:14:25,702 | INFO     | preparing for final server update for job 6206904155 in state='finished'
[2024-05-16 13:14:55] 2024-05-16 20:14:25,703 | INFO     | this job has now completed (state=finished)
[2024-05-16 13:14:55] 2024-05-16 20:14:25,703 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-16 13:14:55] 2024-05-16 20:14:25,703 | INFO     | job 6206904155 has finished - writing final server update
[2024-05-16 13:14:55] 2024-05-16 20:14:25,704 | INFO     | total number of processed events: 400 (read)
[2024-05-16 13:14:55] 2024-05-16 20:14:25,707 | INFO     | executing command: lscpu
[2024-05-16 13:14:55] 2024-05-16 20:14:25,760 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-05-16 13:14:55] 2024-05-16 20:14:25,760 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-16 13:14:55] 2024-05-16 20:14:25,838 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-16 13:14:55] 2024-05-16 20:14:27,389 | INFO     | monitor loop #287: job 0:6206904155 is in state 'finished'
[2024-05-16 13:14:55] 2024-05-16 20:14:27,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 13:14:55] 2024-05-16 20:14:29,892 | INFO     | monitor loop #288: job 0:6206904155 is in state 'finished'
[2024-05-16 13:14:55] 2024-05-16 20:14:29,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-16 13:14:55] 2024-05-16 20:14:31,847 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-16 13:14:55] 2024-05-16 20:14:31,847 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6206904155/memory_monitor_summary.json (trf name=prmon)
[2024-05-16 13:14:55] 2024-05-16 20:14:31,848 | INFO     | extracted standard info from prmon json
[2024-05-16 13:14:55] 2024-05-16 20:14:31,848 | INFO     | extracted standard memory fields from prmon json
[2024-05-16 13:14:55] 2024-05-16 20:14:31,848 | WARNING  | GPU info not found in prmon json
[2024-05-16 13:14:55] 2024-05-16 20:14:31,849 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-16 13:14:55] 2024-05-16 20:14:31,849 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | fitting pss+swap vs Time
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | model: linear, x: [1715886728.0, 1715886789.0, 1715886850.0, 1715886911.0, 1715886972.0, 1715887033.0, 1715887094.0, 1715887155.0, 1715887216.0, 1715887277.0, 1715
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | sum of square deviations: 66962456.40000001
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | sum of deviations: 20932431946.999996
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | mean x: 1715888527.6
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | mean y: 2528394.8333333335
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | -- intersect: -536383407301.2923
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | intersect: -536383407301.2923
[2024-05-16 13:14:55] 2024-05-16 20:14:31,850 | INFO     | chi2: 2.447437015712699
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | -- intersect: -536383407301.2923
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | current memory leak: 312.60 B/s (using 60 data points, chi2=2.45)
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | ..............................
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . Timing measurements:
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . get job = 0 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . initial setup = 2 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . payload setup = 7 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . stage-in = 0 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . payload execution = 4043 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . stage-out = 0 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | . log creation = 0 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,851 | INFO     | ..............................
[2024-05-16 13:14:55] 2024-05-16 20:14:31,905 | INFO     | 
[2024-05-16 13:14:55] 2024-05-16 20:14:31,905 | INFO     | job summary report
[2024-05-16 13:14:55] 2024-05-16 20:14:31,905 | INFO     | --------------------------------------------------
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | PanDA job id: 6206904155
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | task id: 38776104
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | errors: (none)
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | pilot state: finished 
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | transexitcode: 0
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | exeerrorcode: 0
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | exeerrordiag: 
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | exitcode: 0
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | exitmsg: OK
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | cpuconsumptiontime: 28487 s
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | nevents: 400
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | neventsw: 0
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | pid: 247642
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | pgrp: 247642
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | corecount: 12
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | event service: False
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | sizes: {0: 2392199, 6: 2392405, 10: 2392433, 4054: 2418152, 4055: 2418151, 4057: 2427161, 4060: 2427345, 4067: 2427515}
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | --------------------------------------------------
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | 
[2024-05-16 13:14:55] 2024-05-16 20:14:31,906 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-16 13:14:55] 2024-05-16 20:14:32,099 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,099 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,099 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,101 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 13:14:55] 2024-05-16 20:14:32,101 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,101 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 13:14:55] 2024-05-16 20:14:32,101 | INFO     | job 6206904155 has completed (purged errors)
[2024-05-16 13:14:55] 2024-05-16 20:14:32,101 | INFO     | overall cleanup function is called
[2024-05-16 13:14:55] 2024-05-16 20:14:33,104 | INFO     | --- collectZombieJob: --- 10, [247642]
[2024-05-16 13:14:55] 2024-05-16 20:14:33,104 | INFO     | zombie collector waiting for pid 247642
[2024-05-16 13:14:55] 2024-05-16 20:14:33,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 13:14:55] 2024-05-16 20:14:34,109 | INFO     | collected zombie processes
[2024-05-16 13:14:55] 2024-05-16 20:14:34,109 | INFO     | will now attempt to kill all subprocesses of pid=247642
[2024-05-16 13:14:55] 2024-05-16 20:14:34,204 | INFO     | process IDs to be killed: [247642] (in reverse order)
[2024-05-16 13:14:55] 2024-05-16 20:14:34,295 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 13:14:55] 2024-05-16 20:14:34,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 13:14:55] 2024-05-16 20:14:34,300 | INFO     | did not find any defunct processes belonging to 247642
[2024-05-16 13:14:55] 2024-05-16 20:14:34,305 | INFO     | did not find any defunct processes belonging to 247642
[2024-05-16 13:14:55] 2024-05-16 20:14:34,305 | INFO     | ready for new job
[2024-05-16 13:14:55] 2024-05-16 20:14:34,305 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 13:14:55] 2024-05-16 20:14:34,306 | INFO     | *************************************
[2024-05-16 13:14:55] 2024-05-16 20:14:34,306 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 13:14:55] 2024-05-16 20:14:34,306 | INFO     | *************************************
[2024-05-16 13:14:55] 2024-05-16 20:14:34,306 | INFO     | 
[2024-05-16 13:14:55] 2024-05-16 20:14:34,309 | INFO     | architecture information:
[2024-05-16 13:14:55] 2024-05-16 20:14:34,309 | INFO     | executing command: cat /etc/os-release
[2024-05-16 13:14:55] 2024-05-16 20:14:34,337 | INFO     | cat /etc/os-release:
[2024-05-16 13:14:55] NAME="CentOS Linux"
[2024-05-16 13:14:55] VERSION="7 (Core)"
[2024-05-16 13:14:55] ID="centos"
[2024-05-16 13:14:55] ID_LIKE="rhel fedora"
[2024-05-16 13:14:55] VERSION_ID="7"
[2024-05-16 13:14:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 13:14:55] ANSI_COLOR="0;31"
[2024-05-16 13:14:55] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 13:14:55] HOME_URL="https://www.centos.org/"
[2024-05-16 13:14:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 13:14:55] 
[2024-05-16 13:14:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 13:14:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 13:14:55] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 13:14:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 13:14:55] 
[2024-05-16 13:14:55] 2024-05-16 20:14:34,337 | INFO     | *************************************
[2024-05-16 13:14:55] 2024-05-16 20:14:34,840 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-16 13:14:55] 2024-05-16 20:14:34,869 | INFO     | sufficient remaining disk space (1912141250560 B)
[2024-05-16 13:14:55] 2024-05-16 20:14:34,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 13:14:55] 2024-05-16 20:14:34,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 13:14:55] 2024-05-16 20:14:34,906 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-16 13:14:55] 2024-05-16 20:14:34,906 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-16 13:14:55] 2024-05-16 20:14:34,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 13:14:55] 2024-05-16 20:14:34,906 | INFO     | will abort loop
[2024-05-16 13:14:55] 2024-05-16 20:14:35,236 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 13:14:55] 2024-05-16 20:14:35,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 13:14:55] 2024-05-16 20:14:35,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 13:14:55] 2024-05-16 20:14:35,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 13:14:55] 2024-05-16 20:14:35,679 | INFO     | all data control threads have been joined
[2024-05-16 13:14:55] 2024-05-16 20:14:35,874 | INFO     | [job] retrieve thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:35,911 | INFO     | [job] job monitor thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:36,123 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:36,157 | INFO     | [data] copytool_in thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:36,199 | INFO     | all payload control threads have been joined
[2024-05-16 13:14:55] 2024-05-16 20:14:36,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 13:14:55] 2024-05-16 20:14:36,246 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:36,287 | INFO     | [job] validate thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:36,352 | INFO     | all job control threads have been joined
[2024-05-16 13:14:55] 2024-05-16 20:14:36,685 | INFO     | [data] control thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:36,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 13:14:55] 2024-05-16 20:14:36,957 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:37,097 | INFO     | [payload] validate_post thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:37,194 | INFO     | [payload] failed_post thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:37,204 | INFO     | [payload] control thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:37,339 | INFO     | [data] copytool_out thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:37,357 | INFO     | [job] control thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:37,920 | INFO     | [job] queue monitor thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:40,220 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:45,909 | INFO     | job.realtimelogging is not enabled
[2024-05-16 13:14:55] 2024-05-16 20:14:46,914 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 13:14:55] 2024-05-16 20:14:48,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495543097152)>', '<ExcThread(monitor, started 140494797522688)>']
[2024-05-16 13:14:55] 2024-05-16 20:14:49,306 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 13:14:55] 2024-05-16 20:14:49,306 | INFO     | [monitor] control thread has ended
[2024-05-16 13:14:55] 2024-05-16 20:14:53,969 | INFO     | all workflow threads have been joined
[2024-05-16 13:14:55] 2024-05-16 20:14:53,970 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 13:14:55] 2024-05-16 20:14:53,970 | INFO     | traces error code: 0
[2024-05-16 13:14:55] 2024-05-16 20:14:53,970 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 13:14:55] 2024-05-16 20:14:54,066 [wrapper] ==== pilot stdout END ====
[2024-05-16 13:14:55] 2024-05-16 20:14:54,074 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 13:14:55] 2024-05-16 20:14:54,080 [wrapper] pilotpid: 230810
[2024-05-16 13:14:55] 2024-05-16 20:14:54,087 [wrapper] Pilot exit status: 0
[2024-05-16 13:14:55] 2024-05-16 20:14:54,116 [wrapper] pandaids: 6206904155
[2024-05-16 13:14:55] 2024-05-16 20:14:54,172 [wrapper] cleanup: SIGTERM to supervisor_pilot 122751 230811
[2024-05-16 13:14:55] 2024-05-16 20:14:54,181 [wrapper] Test setup, not cleaning
[2024-05-16 13:14:55] 2024-05-16 20:14:54,188 [wrapper] ==== wrapper stdout END ====
[2024-05-16 13:14:55] 2024-05-16 20:14:54,196 [wrapper] ==== wrapper stderr END ====
[2024-05-16 13:14:55] 2024-05-16 20:14:54,212 [wrapper] apfmon messages muted
[2024-05-16 13:14:55]  *** Error codes and diagnostics ***
[2024-05-16 13:14:55]     "exeErrorCode": 0,
[2024-05-16 13:14:55]     "exeErrorDiag": "",
[2024-05-16 13:14:55]     "pilotErrorCode": 0,
[2024-05-16 13:14:55]     "pilotErrorDiag": "",
[2024-05-16 13:14:55]  *** Listing of results directory ***
[2024-05-16 13:14:55] total 822284
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc    467845 May 15 11:25 pilot3.tar.gz
[2024-05-16 13:14:55] -rwx------ 1 boinc boinc     32251 May 15 11:55 runpilot2-wrapper.sh
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc      5633 May 15 11:55 queuedata.json
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc       100 May 16 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 13:14:55] -rwxr-xr-x 1 boinc boinc      7986 May 16 12:06 run_atlas
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc       105 May 16 12:06 job.xml
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc      6627 May 16 12:06 init_data.xml
[2024-05-16 13:14:55] -rw-r--r-- 2 boinc boinc 602743415 May 16 12:06 EVNT.38776100._000317.pool.root.1
[2024-05-16 13:14:55] -rw-r--r-- 2 boinc boinc     17537 May 16 12:06 start_atlas.sh
[2024-05-16 13:14:55] drwxrwx--x 2 boinc boinc      4096 May 16 12:06 shared
[2024-05-16 13:14:55] -rw-r--r-- 2 boinc boinc    480003 May 16 12:06 input.tar.gz
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc         0 May 16 12:06 boinc_lockfile
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc      2641 May 16 12:06 pandaJob.out
[2024-05-16 13:14:55] -rw------- 1 boinc boinc       424 May 16 12:06 setup.sh.local
[2024-05-16 13:14:55] -rw------- 1 boinc boinc   1019270 May 16 12:06 agis_schedconf.cvmfs.json
[2024-05-16 13:14:55] -rw------- 1 boinc boinc         0 May 16 12:06 agis_ddmendpoints.agis.ALL.json
[2024-05-16 13:14:55] -rw------- 1 boinc boinc   1324701 May 16 12:06 cric_ddmendpoints.json
[2024-05-16 13:14:55] drwx------ 4 boinc boinc      4096 May 16 12:06 pilot3
[2024-05-16 13:14:55] -rw------- 1 boinc boinc 234282613 May 16 13:13 HITS.38776104._007909.pool.root.1
[2024-05-16 13:14:55] -rw------- 1 boinc boinc        95 May 16 13:13 pilot_heartbeat.json
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc       530 May 16 13:13 boinc_task_state.xml
[2024-05-16 13:14:55] -rw------- 1 boinc boinc      1050 May 16 13:14 memory_monitor_summary.json
[2024-05-16 13:14:55] -rw------- 1 boinc boinc    349652 May 16 13:14 log.38776104._007909.job.log.tgz.1
[2024-05-16 13:14:55] -rw------- 1 boinc boinc      7768 May 16 13:14 heartbeat.json
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc      8192 May 16 13:14 boinc_mmap_file
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc        27 May 16 13:14 wrapper_checkpoint.txt
[2024-05-16 13:14:55] -rw------- 1 boinc boinc      4468 May 16 13:14 pilotlog.txt
[2024-05-16 13:14:55] -rw------- 1 boinc boinc    380644 May 16 13:14 log.38776104._007909.job.log.1
[2024-05-16 13:14:55] -rw------- 1 boinc boinc       357 May 16 13:14 output.list
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc       620 May 16 13:14 runtime_log
[2024-05-16 13:14:55] -rw------- 1 boinc boinc    747520 May 16 13:14 result.tar.gz
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc     11286 May 16 13:14 runtime_log.err
[2024-05-16 13:14:55] -rw------- 1 boinc boinc       657 May 16 13:14 QHCMDm3xYR5n7Olcko1bjSoqABFKDmABFKDmOtvXDmZuYKDmPo1pkm.diag
[2024-05-16 13:14:55] -rw-r--r-- 1 boinc boinc     21904 May 16 13:14 stderr.txt
[2024-05-16 13:14:55] HITS file was successfully produced:
[2024-05-16 13:14:55] -rw------- 1 boinc boinc 234282613 May 16 13:13 shared/HITS.pool.root.1
[2024-05-16 13:14:55]  *** Contents of shared directory: ***
[2024-05-16 13:14:55] total 818644
[2024-05-16 13:14:55] -rw-r--r-- 2 boinc boinc 602743415 May 16 12:06 ATLAS.root_0
[2024-05-16 13:14:55] -rw-r--r-- 2 boinc boinc     17537 May 16 12:06 start_atlas.sh
[2024-05-16 13:14:55] -rw-r--r-- 2 boinc boinc    480003 May 16 12:06 input.tar.gz
[2024-05-16 13:14:55] -rw------- 1 boinc boinc 234282613 May 16 13:13 HITS.pool.root.1
[2024-05-16 13:14:55] -rw------- 1 boinc boinc    747520 May 16 13:14 result.tar.gz
13:14:56 (222115): run_atlas exited; CPU time 28325.969871
13:14:56 (222115): called boinc_finish(0)

</stderr_txt>
]]>

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