Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:15:15 (702776): wrapper (7.7.26015): starting
17:15:15 (702776): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 17:15:15] Arguments: --nthreads 4
[2024-05-19 17:15:15] Threads: 4
[2024-05-19 17:15:15] Checking for CVMFS
[2024-05-19 17:15:15] No cvmfs_config command found, will try listing directly
[2024-05-19 17:15:15] CVMFS is ok
[2024-05-19 17:15:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 17:15:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 17:15:15] Further information can be found at the LHC@home message board.
[2024-05-19 17:15:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 17:15:15] Checking for apptainer binary...
[2024-05-19 17:15:15] which: no apptainer in ((null))
[2024-05-19 17:15:15] apptainer is not installed, using version from CVMFS
[2024-05-19 17:15:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 17:15:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-05-19 17:15:16] apptainer works
[2024-05-19 17:15:16] Set ATHENA_PROC_NUMBER=4
[2024-05-19 17:15:16] Set ATHENA_CORE_NUMBER=4
[2024-05-19 17:15:16] Starting ATLAS job with PandaID=6206904078
[2024-05-19 17:15:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 19:02:46]  *** The last 200 lines of the pilot log: ***
[2024-05-19 19:02:46] 2024-05-19 17:02:24,600 | INFO     | sum of square deviations: 310052325.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,600 | INFO     | sum of deviations: 36341742104.00001
[2024-05-19 19:02:46] 2024-05-19 17:02:24,600 | INFO     | mean x: 1716134768.5
[2024-05-19 19:02:46] 2024-05-19 17:02:24,600 | INFO     | mean y: 2231095.52
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | -- intersect: -201148742929.70224
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | intersect: -201148742929.70224
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | chi2: 3.699664587221505
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | current chi2=3.699664587221505 (change=0.3710143572140478 %)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | right removable region: 99
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | model: linear, x: [1716132054.0, 1716132115.0, 1716132176.0, 1716132237.0, 1716132298.0, 1716132359.0, 1716132420.0, 1716132481.0, 1716132542.0, 1716132603.0, 1716
[2024-05-19 19:02:46] 2024-05-19 17:02:24,601 | INFO     | sum of square deviations: 310052325.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | sum of deviations: 16383003873.999996
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | mean x: 1716135073.5
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | mean y: 2304360.08
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | -- intersect: -90677381907.25493
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | intersect: -90677381907.25493
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | chi2: 1.5079538764941167
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | current chi2=1.5079538764941167 (change=59.39201741959942 %)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | model: linear, x: [1716132359.0, 1716132420.0, 1716132481.0, 1716132542.0, 1716132603.0, 1716132664.0, 1716132725.0, 1716132786.0, 1716132847.0, 1716132908.0, 1716
[2024-05-19 19:02:46] 2024-05-19 17:02:24,602 | INFO     | sum of square deviations: 265828240.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | sum of deviations: -2090463229.0000002
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | mean x: 1716135226.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | mean y: 2368126.863157895
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | -- intersect: 13497990660.964897
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | intersect: 13497990660.964897
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | chi2: 0.03612275692065171
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | current chi2=0.03612275692065171 (change=97.60451844822771 %)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | model: linear, x: [1716132664.0, 1716132725.0, 1716132786.0, 1716132847.0, 1716132908.0, 1716132969.0, 1716133030.0, 1716133091.0, 1716133152.0, 1716133213.0, 1716
[2024-05-19 19:02:46] 2024-05-19 17:02:24,603 | INFO     | sum of square deviations: 226022842.5
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | sum of deviations: -3158630294.4999995
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | mean x: 1716135378.5
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | mean y: 2372014.966666667
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | -- intersect: 23985068347.94161
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | intersect: 23985068347.94161
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | chi2: 0.0020187773770475818
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | current chi2=0.0020187773770475818 (change=94.41134190980472 %)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,604 | INFO     | model: linear, x: [1716132969.0, 1716133030.0, 1716133091.0, 1716133152.0, 1716133213.0, 1716133274.0, 1716133335.0, 1716133396.0, 1716133457.0, 1716133518.0, 1716
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | sum of square deviations: 190403570.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | sum of deviations: -2576658971.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | mean x: 1716135531.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | mean y: 2369488.2
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | -- intersect: 23226177799.16286
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | intersect: 23226177799.16286
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | chi2: 0.0016403198647942099
[2024-05-19 19:02:46] 2024-05-19 17:02:24,605 | INFO     | current chi2=0.0016403198647942099 (change=18.74686711651474 %)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | left removable region: 40
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | model: linear, x: [1716134189.0, 1716134250.0, 1716134311.0, 1716134372.0, 1716134433.0, 1716134494.0, 1716134555.0, 1716134616.0, 1716134677.0, 1716134738.0, 1716
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | sum of square deviations: 63666310.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | sum of deviations: -712831481.9999996
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | mean x: 1716135958.0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | mean y: 2360279.661016949
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | -- intersect: 19216851244.42133
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | intersect: 19216851244.42133
[2024-05-19 19:02:46] 2024-05-19 17:02:24,606 | INFO     | chi2: 0.0009197013122304355
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | -- intersect: 19216851244.42133
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | current memory leak: -11.20 B/s (using 59 data points, chi2=0.00)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | ..............................
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | . Timing measurements:
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | . get job = 0 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | . initial setup = 1 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | . payload setup = 5 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,607 | INFO     | . stage-in = 0 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,608 | INFO     | . payload execution = 6389 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,608 | INFO     | . stage-out = 0 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,608 | INFO     | . log creation = 0 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,608 | INFO     | ..............................
[2024-05-19 19:02:46] 2024-05-19 17:02:24,713 | INFO     | 
[2024-05-19 19:02:46] 2024-05-19 17:02:24,713 | INFO     | job summary report
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | --------------------------------------------------
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | PanDA job id: 6206904078
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | task id: 38776104
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | errors: (none)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | pilot state: finished 
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | transexitcode: 0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | exeerrorcode: 0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | exeerrordiag: 
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | exitcode: 0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | exitmsg: OK
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | cpuconsumptiontime: 23017 s
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | nevents: 400
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | neventsw: 0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,714 | INFO     | pid: 714970
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | pgrp: 714970
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | corecount: 4
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | event service: False
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | sizes: {0: 2392042, 1: 2392241, 4: 2392447, 11: 2392475, 6398: 2419488, 6399: 2428472, 6400: 2428656, 6405: 2428826}
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | --------------------------------------------------
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | 
[2024-05-19 19:02:46] 2024-05-19 17:02:24,715 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2024-05-19 19:02:46] 2024-05-19 17:02:24,734 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,735 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | job 6206904078 has completed (purged errors)
[2024-05-19 19:02:46] 2024-05-19 17:02:24,736 | INFO     | overall cleanup function is called
[2024-05-19 19:02:46] 2024-05-19 17:02:25,743 | INFO     | --- collectZombieJob: --- 10, [714970]
[2024-05-19 19:02:46] 2024-05-19 17:02:25,743 | INFO     | zombie collector waiting for pid 714970
[2024-05-19 19:02:46] 2024-05-19 17:02:25,744 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 19:02:46] 2024-05-19 17:02:26,748 | INFO     | collected zombie processes
[2024-05-19 19:02:46] 2024-05-19 17:02:26,748 | INFO     | will now attempt to kill all subprocesses of pid=714970
[2024-05-19 19:02:46] 2024-05-19 17:02:26,928 | INFO     | process IDs to be killed: [714970] (in reverse order)
[2024-05-19 19:02:46] 2024-05-19 17:02:27,119 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 19:02:46] 2024-05-19 17:02:27,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 19:02:46] 2024-05-19 17:02:27,138 | INFO     | did not find any defunct processes belonging to 714970
[2024-05-19 19:02:46] 2024-05-19 17:02:27,157 | INFO     | did not find any defunct processes belonging to 714970
[2024-05-19 19:02:46] 2024-05-19 17:02:27,157 | INFO     | ready for new job
[2024-05-19 19:02:46] 2024-05-19 17:02:27,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 19:02:46] 2024-05-19 17:02:27,159 | INFO     | *************************************
[2024-05-19 19:02:46] 2024-05-19 17:02:27,159 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 19:02:46] 2024-05-19 17:02:27,159 | INFO     | *************************************
[2024-05-19 19:02:46] 2024-05-19 17:02:27,159 | INFO     | 
[2024-05-19 19:02:46] 2024-05-19 17:02:27,165 | INFO     | architecture information:
[2024-05-19 19:02:46] 2024-05-19 17:02:27,166 | INFO     | executing command: cat /etc/os-release
[2024-05-19 19:02:46] 2024-05-19 17:02:27,184 | INFO     | cat /etc/os-release:
[2024-05-19 19:02:46] NAME="CentOS Linux"
[2024-05-19 19:02:46] VERSION="7 (Core)"
[2024-05-19 19:02:46] ID="centos"
[2024-05-19 19:02:46] ID_LIKE="rhel fedora"
[2024-05-19 19:02:46] VERSION_ID="7"
[2024-05-19 19:02:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 19:02:46] ANSI_COLOR="0;31"
[2024-05-19 19:02:46] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 19:02:46] HOME_URL="https://www.centos.org/"
[2024-05-19 19:02:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 19:02:46] 
[2024-05-19 19:02:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 19:02:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 19:02:46] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 19:02:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 19:02:46] 
[2024-05-19 19:02:46] 2024-05-19 17:02:27,184 | INFO     | *************************************
[2024-05-19 19:02:46] 2024-05-19 17:02:27,687 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2024-05-19 19:02:46] 2024-05-19 17:02:27,710 | INFO     | sufficient remaining disk space (2995762757632 B)
[2024-05-19 19:02:46] 2024-05-19 17:02:27,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 19:02:46] 2024-05-19 17:02:27,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 19:02:46] 2024-05-19 17:02:27,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 19:02:46] 2024-05-19 17:02:27,711 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 19:02:46] 2024-05-19 17:02:27,712 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 19:02:46] 2024-05-19 17:02:27,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 19:02:46] 2024-05-19 17:02:27,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 19:02:46] 2024-05-19 17:02:27,813 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-19 19:02:46] 2024-05-19 17:02:27,813 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-19 19:02:46] 2024-05-19 17:02:27,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 19:02:46] 2024-05-19 17:02:27,814 | INFO     | will abort loop
[2024-05-19 19:02:46] 2024-05-19 17:02:28,260 | INFO     | all job control threads have been joined
[2024-05-19 19:02:46] 2024-05-19 17:02:28,625 | INFO     | all data control threads have been joined
[2024-05-19 19:02:46] 2024-05-19 17:02:28,716 | INFO     | [job] retrieve thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:28,780 | INFO     | all payload control threads have been joined
[2024-05-19 19:02:46] 2024-05-19 17:02:28,816 | INFO     | [job] job monitor thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:28,859 | INFO     | [job] validate thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:28,956 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:28,956 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,003 | INFO     | [payload] validate_post thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,265 | INFO     | [job] control thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,511 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,583 | INFO     | [data] copytool_in thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,631 | INFO     | [data] control thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 19:02:46] 2024-05-19 17:02:29,716 | INFO     | [data] copytool_out thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:29,784 | INFO     | [payload] control thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:30,096 | INFO     | [payload] failed_post thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:30,682 | INFO     | [job] queue monitor thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:30,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 19:02:46] 2024-05-19 17:02:34,718 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:37,871 | INFO     | job.realtimelogging is not enabled
[2024-05-19 19:02:46] 2024-05-19 17:02:38,877 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 19:02:46] 2024-05-19 17:02:40,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47467870987328)>', '<ExcThread(monitor, started 47468044338944)>']
[2024-05-19 19:02:46] 2024-05-19 17:02:40,767 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 19:02:46] 2024-05-19 17:02:40,768 | INFO     | [monitor] control thread has ended
[2024-05-19 19:02:46] 2024-05-19 17:02:45,252 | INFO     | all workflow threads have been joined
[2024-05-19 19:02:46] 2024-05-19 17:02:45,252 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 19:02:46] 2024-05-19 17:02:45,253 | INFO     | traces error code: 0
[2024-05-19 19:02:46] 2024-05-19 17:02:45,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 19:02:46] 2024-05-19 17:02:45,329 [wrapper] ==== pilot stdout END ====
[2024-05-19 19:02:46] 2024-05-19 17:02:45,331 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 19:02:46] 2024-05-19 17:02:45,333 [wrapper] pilotpid: 707454
[2024-05-19 19:02:46] 2024-05-19 17:02:45,334 [wrapper] Pilot exit status: 0
[2024-05-19 19:02:46] 2024-05-19 17:02:45,342 [wrapper] pandaids: 6206904078
[2024-05-19 19:02:46] 2024-05-19 17:02:45,446 [wrapper] cleanup: SIGTERM to supervisor_pilot 1254253 707455
[2024-05-19 19:02:46] 2024-05-19 17:02:45,449 [wrapper] Test setup, not cleaning
[2024-05-19 19:02:46] 2024-05-19 17:02:45,451 [wrapper] ==== wrapper stdout END ====
[2024-05-19 19:02:46] 2024-05-19 17:02:45,452 [wrapper] ==== wrapper stderr END ====
[2024-05-19 19:02:46] 2024-05-19 17:02:45,456 [wrapper] apfmon messages muted
[2024-05-19 19:02:46]  *** Error codes and diagnostics ***
[2024-05-19 19:02:46]     "exeErrorCode": 0,
[2024-05-19 19:02:46]     "exeErrorDiag": "",
[2024-05-19 19:02:46]     "pilotErrorCode": 0,
[2024-05-19 19:02:46]     "pilotErrorDiag": "",
[2024-05-19 19:02:46]  *** Listing of results directory ***
[2024-05-19 19:02:46] total 818512
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc    467845 May 15 20:25 pilot3.tar.gz
[2024-05-19 19:02:46] -rwx------ 1 boinc boinc     32251 May 15 20:43 runpilot2-wrapper.sh
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc      5633 May 15 20:43 queuedata.json
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc       100 May 19 17:15 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 19:02:46] -rwxr-xr-x 1 boinc boinc      7986 May 19 17:15 run_atlas
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc       105 May 19 17:15 job.xml
[2024-05-19 19:02:46] -rw-r--r-- 2 boinc boinc 602230514 May 19 17:15 EVNT.38776100._000314.pool.root.1
[2024-05-19 19:02:46] -rw-r--r-- 2 boinc boinc     17537 May 19 17:15 start_atlas.sh
[2024-05-19 19:02:46] drwxrwx--x 2 boinc boinc      4096 May 19 17:15 shared
[2024-05-19 19:02:46] -rw-r--r-- 2 boinc boinc    479999 May 19 17:15 input.tar.gz
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc      6646 May 19 17:15 init_data.xml
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc         0 May 19 17:15 boinc_lockfile
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc      2640 May 19 17:15 pandaJob.out
[2024-05-19 19:02:46] -rw------- 1 boinc boinc       424 May 19 17:15 setup.sh.local
[2024-05-19 19:02:46] -rw------- 1 boinc boinc   1014053 May 19 17:15 agis_schedconf.cvmfs.json
[2024-05-19 19:02:46] -rw------- 1 boinc boinc         0 May 19 17:15 agis_ddmendpoints.agis.ALL.json
[2024-05-19 19:02:46] -rw------- 1 boinc boinc   1324701 May 19 17:15 cric_ddmendpoints.json
[2024-05-19 19:02:46] drwx------ 4 boinc boinc      4096 May 19 17:15 pilot3
[2024-05-19 19:02:46] -rw------- 1 boinc boinc        95 May 19 19:01 pilot_heartbeat.json
[2024-05-19 19:02:46] -rw------- 1 boinc boinc 230570109 May 19 19:01 HITS.38776104._007833.pool.root.1
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc       530 May 19 19:02 boinc_task_state.xml
[2024-05-19 19:02:46] -rw------- 1 boinc boinc      1042 May 19 19:02 memory_monitor_summary.json
[2024-05-19 19:02:46] -rw------- 1 boinc boinc    252609 May 19 19:02 log.38776104._007833.job.log.tgz.1
[2024-05-19 19:02:46] -rw------- 1 boinc boinc      7722 May 19 19:02 heartbeat.json
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc      8192 May 19 19:02 boinc_mmap_file
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc        27 May 19 19:02 wrapper_checkpoint.txt
[2024-05-19 19:02:46] -rw------- 1 boinc boinc      4604 May 19 19:02 pilotlog.txt
[2024-05-19 19:02:46] -rw------- 1 boinc boinc    661377 May 19 19:02 log.38776104._007833.job.log.1
[2024-05-19 19:02:46] -rw------- 1 boinc boinc       357 May 19 19:02 output.list
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc       620 May 19 19:02 runtime_log
[2024-05-19 19:02:46] -rw------- 1 boinc boinc    931840 May 19 19:02 result.tar.gz
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc     11428 May 19 19:02 runtime_log.err
[2024-05-19 19:02:46] -rw------- 1 boinc boinc       655 May 19 19:02 BaLKDmvlYR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmhfOKDmxKNrSo.diag
[2024-05-19 19:02:46] -rw-r--r-- 1 boinc boinc     21253 May 19 19:02 stderr.txt
[2024-05-19 19:02:46] HITS file was successfully produced:
[2024-05-19 19:02:46] -rw------- 1 boinc boinc 230570109 May 19 19:01 shared/HITS.pool.root.1
[2024-05-19 19:02:46]  *** Contents of shared directory: ***
[2024-05-19 19:02:46] total 814696
[2024-05-19 19:02:46] -rw-r--r-- 2 boinc boinc 602230514 May 19 17:15 ATLAS.root_0
[2024-05-19 19:02:46] -rw-r--r-- 2 boinc boinc     17537 May 19 17:15 start_atlas.sh
[2024-05-19 19:02:46] -rw-r--r-- 2 boinc boinc    479999 May 19 17:15 input.tar.gz
[2024-05-19 19:02:46] -rw------- 1 boinc boinc 230570109 May 19 19:01 HITS.pool.root.1
[2024-05-19 19:02:46] -rw------- 1 boinc boinc    931840 May 19 19:02 result.tar.gz
19:02:47 (702776): run_atlas exited; CPU time 22852.390233
19:02:47 (702776): called boinc_finish(0)

</stderr_txt>
]]>

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