Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
21:54:27 (1737557): wrapper (7.7.26015): starting
21:54:27 (1737557): wrapper: running run_atlas (--nthreads 12)
[2024-05-18 21:54:27] Arguments: --nthreads 12
[2024-05-18 21:54:27] Threads: 12
[2024-05-18 21:54:27] Checking for CVMFS
[2024-05-18 21:54:27] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-18 21:54:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-18 21:54:27] Running cvmfs_config stat atlas.cern.ch
[2024-05-18 21:54:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-18 21:54:27] 2.11.2.0 2599122 1283 60760 132896 0 56 4022213 4194305 911 130560 0 2074884 98.287 4730873 8637 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-05-18 21:54:27] CVMFS is ok
[2024-05-18 21:54:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-18 21:54:27] Checking for apptainer binary...
[2024-05-18 21:54:27] apptainer is not installed, using version from CVMFS
[2024-05-18 21:54:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-18 21:54:27] Trebeth
[2024-05-18 21:54:27] apptainer works
[2024-05-18 21:54:28] Set ATHENA_PROC_NUMBER=12
[2024-05-18 21:54:28] Set ATHENA_CORE_NUMBER=12
[2024-05-18 21:54:28] Starting ATLAS job with PandaID=6206854445
[2024-05-18 21:54:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-18 23:07:53]  *** The last 200 lines of the pilot log: ***
[2024-05-18 23:07:53]  filesize=369134
[2024-05-18 23:07:53]  filetype=log
[2024-05-18 23:07:53]  guid=db2849da-7493-42bd-8d69-d3e5f1f6f18f
[2024-05-18 23:07:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-18 23:07:53]  is_tar=False
[2024-05-18 23:07:53]  lfn=log.38776104._006923.job.log.tgz.1
[2024-05-18 23:07:53]  mtime=0
[2024-05-18 23:07:53]  protocol_id=None
[2024-05-18 23:07:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-18 23:07:53]  replicas=None
[2024-05-18 23:07:53]  scope=mc23_13p6TeV
[2024-05-18 23:07:53]  status=None
[2024-05-18 23:07:53]  status_code=0
[2024-05-18 23:07:53]  storage_token=
[2024-05-18 23:07:53]  surl=/var/lib/boinc-client/slots/26/PanDA_Pilot-6206854445/log.38776104._006923.job.log.tgz.1
[2024-05-18 23:07:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/3d/log.38776104._006923.job.log.tgz.1
[2024-05-18 23:07:53]  workdir=None
[2024-05-18 23:07:53] ]
[2024-05-18 23:07:53] 2024-05-19 03:07:30,690 | INFO     | transferring file log.38776104._006923.job.log.tgz.1 from /var/lib/boinc-client/slots/26/PanDA_Pilot-6206854445/log.38776104._006923.job.log.tgz.1 to /var/lib/boin
[2024-05-18 23:07:53] 2024-05-19 03:07:30,690 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/26/PanDA_Pilot-6206854445/log.38776104._006923.job.log.tgz.1 /var/lib/boinc-client/slots/26/log.3877
[2024-05-18 23:07:53] 2024-05-19 03:07:30,707 | INFO     | adding to output.list: log.38776104._006923.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/78/3d/log.38776104._006923.job.log.tg
[2024-05-18 23:07:53] 2024-05-19 03:07:30,707 | INFO     | summary of transferred files:
[2024-05-18 23:07:53] 2024-05-19 03:07:30,707 | INFO     |  -- lfn=log.38776104._006923.job.log.tgz.1, status_code=0, status=transferred
[2024-05-18 23:07:53] 2024-05-19 03:07:30,708 | INFO     | stage-out finished correctly
[2024-05-18 23:07:53] 2024-05-19 03:07:32,080 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-18 23:07:53] 2024-05-19 03:07:33,124 | WARNING  | process 1749503 is no longer using CPU - aborting
[2024-05-18 23:07:53] 2024-05-19 03:07:33,124 | INFO     | will not send any job update
[2024-05-18 23:07:53] 2024-05-19 03:07:34,473 | INFO     | job 6206854445 has state=finished
[2024-05-18 23:07:53] 2024-05-19 03:07:34,473 | INFO     | preparing for final server update for job 6206854445 in state='finished'
[2024-05-18 23:07:53] 2024-05-19 03:07:34,474 | INFO     | this job has now completed (state=finished)
[2024-05-18 23:07:53] 2024-05-19 03:07:34,474 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-18 23:07:53] 2024-05-19 03:07:34,474 | INFO     | job 6206854445 has finished - writing final server update
[2024-05-18 23:07:53] 2024-05-19 03:07:34,474 | INFO     | total number of processed events: 400 (read)
[2024-05-18 23:07:53] 2024-05-19 03:07:34,501 | INFO     | executing command: lscpu
[2024-05-18 23:07:53] 2024-05-19 03:07:34,560 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-05-18 23:07:53] 2024-05-19 03:07:34,561 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-18 23:07:53] 2024-05-19 03:07:34,595 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-18 23:07:53] 2024-05-19 03:07:35,626 | INFO     | monitor loop #343: job 0:6206854445 is in state 'finished'
[2024-05-18 23:07:53] 2024-05-19 03:07:35,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 23:07:53] 2024-05-19 03:07:38,129 | INFO     | monitor loop #344: job 0:6206854445 is in state 'finished'
[2024-05-18 23:07:53] 2024-05-19 03:07:38,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-18 23:07:53] 2024-05-19 03:07:39,528 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-18 23:07:53] 2024-05-19 03:07:39,529 | INFO     | using path: /var/lib/boinc-client/slots/26/PanDA_Pilot-6206854445/memory_monitor_summary.json (trf name=prmon)
[2024-05-18 23:07:53] 2024-05-19 03:07:39,529 | INFO     | extracted standard info from prmon json
[2024-05-18 23:07:53] 2024-05-19 03:07:39,529 | INFO     | extracted standard memory fields from prmon json
[2024-05-18 23:07:53] 2024-05-19 03:07:39,530 | WARNING  | GPU info not found in prmon json
[2024-05-18 23:07:53] 2024-05-19 03:07:39,530 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-18 23:07:53] 2024-05-19 03:07:39,530 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-18 23:07:53] 2024-05-19 03:07:39,531 | INFO     | fitting pss+swap vs Time
[2024-05-18 23:07:53] 2024-05-19 03:07:39,531 | INFO     | model: linear, x: [1716084006.0, 1716084067.0, 1716084128.0, 1716084189.0, 1716084250.0, 1716084311.0, 1716084372.0, 1716084433.0, 1716084494.0, 1716084555.0, 1716
[2024-05-18 23:07:53] 2024-05-19 03:07:39,531 | INFO     | sum of square deviations: 85136480.0
[2024-05-18 23:07:53] 2024-05-19 03:07:39,531 | INFO     | sum of deviations: 1626130314.0000005
[2024-05-18 23:07:53] 2024-05-19 03:07:39,531 | INFO     | mean x: 1716085958.0
[2024-05-18 23:07:53] 2024-05-19 03:07:39,531 | INFO     | mean y: 2760107.876923077
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | -- intersect: -32774956303.86023
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | intersect: -32774956303.86023
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | chi2: 0.4537046208404397
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | -- intersect: -32774956303.86023
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | current memory leak: 19.10 B/s (using 65 data points, chi2=0.45)
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | ..............................
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . Timing measurements:
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . get job = 0 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . initial setup = 2 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . payload setup = 4 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . stage-in = 0 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . payload execution = 4348 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . stage-out = 0 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | . log creation = 0 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,532 | INFO     | ..............................
[2024-05-18 23:07:53] 2024-05-19 03:07:39,619 | INFO     | 
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | job summary report
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | --------------------------------------------------
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | PanDA job id: 6206854445
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | task id: 38776104
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | errors: (none)
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | pilot state: finished 
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | transexitcode: 0
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | exeerrorcode: 0
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | exeerrordiag: 
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | exitcode: 0
[2024-05-18 23:07:53] 2024-05-19 03:07:39,620 | INFO     | exitmsg: OK
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | cpuconsumptiontime: 44133 s
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | nevents: 400
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | neventsw: 0
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | pid: 1749503
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | pgrp: 1749503
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | corecount: 12
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | event service: False
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | sizes: {0: 2392159, 4: 2392365, 11: 2392393, 4356: 2418388, 4359: 2427364, 4360: 2427420, 4367: 2427718}
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | --------------------------------------------------
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | 
[2024-05-18 23:07:53] 2024-05-19 03:07:39,621 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/26
[2024-05-18 23:07:53] 2024-05-19 03:07:39,638 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,639 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,640 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,640 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-18 23:07:53] 2024-05-19 03:07:39,640 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,640 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-18 23:07:53] 2024-05-19 03:07:39,640 | INFO     | job 6206854445 has completed (purged errors)
[2024-05-18 23:07:53] 2024-05-19 03:07:39,640 | INFO     | overall cleanup function is called
[2024-05-18 23:07:53] 2024-05-19 03:07:40,645 | INFO     | --- collectZombieJob: --- 10, [1749503]
[2024-05-18 23:07:53] 2024-05-19 03:07:40,645 | INFO     | zombie collector waiting for pid 1749503
[2024-05-18 23:07:53] 2024-05-19 03:07:40,645 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-18 23:07:53] 2024-05-19 03:07:41,649 | INFO     | collected zombie processes
[2024-05-18 23:07:53] 2024-05-19 03:07:41,649 | INFO     | will now attempt to kill all subprocesses of pid=1749503
[2024-05-18 23:07:53] 2024-05-19 03:07:41,744 | INFO     | process IDs to be killed: [1749503] (in reverse order)
[2024-05-18 23:07:53] 2024-05-19 03:07:41,831 | WARNING  | found no corresponding commands to process id(s)
[2024-05-18 23:07:53] 2024-05-19 03:07:41,831 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-18 23:07:53] 2024-05-19 03:07:41,839 | INFO     | did not find any defunct processes belonging to 1749503
[2024-05-18 23:07:53] 2024-05-19 03:07:41,846 | INFO     | did not find any defunct processes belonging to 1749503
[2024-05-18 23:07:53] 2024-05-19 03:07:41,846 | INFO     | ready for new job
[2024-05-18 23:07:53] 2024-05-19 03:07:41,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-18 23:07:53] 2024-05-19 03:07:41,848 | INFO     | *************************************
[2024-05-18 23:07:53] 2024-05-19 03:07:41,848 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-18 23:07:53] 2024-05-19 03:07:41,848 | INFO     | *************************************
[2024-05-18 23:07:53] 2024-05-19 03:07:41,848 | INFO     | 
[2024-05-18 23:07:53] 2024-05-19 03:07:41,868 | INFO     | architecture information:
[2024-05-18 23:07:53] 2024-05-19 03:07:41,868 | INFO     | executing command: cat /etc/os-release
[2024-05-18 23:07:53] 2024-05-19 03:07:41,880 | INFO     | cat /etc/os-release:
[2024-05-18 23:07:53] NAME="CentOS Linux"
[2024-05-18 23:07:53] VERSION="7 (Core)"
[2024-05-18 23:07:53] ID="centos"
[2024-05-18 23:07:53] ID_LIKE="rhel fedora"
[2024-05-18 23:07:53] VERSION_ID="7"
[2024-05-18 23:07:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-18 23:07:53] ANSI_COLOR="0;31"
[2024-05-18 23:07:53] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-18 23:07:53] HOME_URL="https://www.centos.org/"
[2024-05-18 23:07:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-18 23:07:53] 
[2024-05-18 23:07:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-18 23:07:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-18 23:07:53] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-18 23:07:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-18 23:07:53] 
[2024-05-18 23:07:53] 2024-05-19 03:07:41,880 | INFO     | *************************************
[2024-05-18 23:07:53] 2024-05-19 03:07:42,383 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/26
[2024-05-18 23:07:53] 2024-05-19 03:07:42,397 | INFO     | sufficient remaining disk space (385211170816 B)
[2024-05-18 23:07:53] 2024-05-19 03:07:42,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-18 23:07:53] 2024-05-19 03:07:42,397 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-18 23:07:53] 2024-05-19 03:07:42,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-18 23:07:53] 2024-05-19 03:07:42,398 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-18 23:07:53] 2024-05-19 03:07:42,398 | INFO     | aborting loop
[2024-05-18 23:07:53] 2024-05-19 03:07:42,398 | INFO     | found 0 job(s) in 20 queues
[2024-05-18 23:07:53] 2024-05-19 03:07:42,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-18 23:07:53] 2024-05-19 03:07:42,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-18 23:07:53] 2024-05-19 03:07:42,543 | INFO     | all job control threads have been joined
[2024-05-18 23:07:53] 2024-05-19 03:07:42,669 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-18 23:07:53] 2024-05-19 03:07:43,401 | INFO     | [job] retrieve thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:43,401 | INFO     | [job] job monitor thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:43,409 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:43,437 | INFO     | all payload control threads have been joined
[2024-05-18 23:07:53] 2024-05-19 03:07:43,451 | INFO     | all data control threads have been joined
[2024-05-18 23:07:53] 2024-05-19 03:07:43,549 | INFO     | [job] control thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:43,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-18 23:07:53] 2024-05-19 03:07:43,849 | INFO     | [job] validate thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:43,941 | INFO     | [payload] validate_post thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:43,981 | INFO     | [payload] validate_pre thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,021 | INFO     | [job] create_data_payload thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,377 | INFO     | [data] copytool_in thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,441 | INFO     | [payload] control thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,449 | INFO     | [payload] failed_post thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,453 | INFO     | [data] control thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,465 | INFO     | [payload] execute_payloads thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:44,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-18 23:07:53] 2024-05-19 03:07:45,605 | INFO     | [job] queue monitor thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:45,809 | INFO     | [data] copytool_out thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:46,673 | INFO     | [data] queue_monitor thread has finished
[2024-05-18 23:07:53] 2024-05-19 03:07:48,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139973870294848)>', '<ExcThread(monitor, started 139973177108224)>']
[2024-05-18 23:07:53] 2024-05-19 03:07:48,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-18 23:07:53] 2024-05-19 03:07:48,422 | INFO     | [monitor] control thread has ended
[2024-05-18 23:07:53] 2024-05-19 03:07:53,081 | INFO     | all workflow threads have been joined
[2024-05-18 23:07:53] 2024-05-19 03:07:53,081 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-18 23:07:53] 2024-05-19 03:07:53,081 | INFO     | traces error code: 0
[2024-05-18 23:07:53] 2024-05-19 03:07:53,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-18 23:07:53] 2024-05-19 03:07:53,151 [wrapper] ==== pilot stdout END ====
[2024-05-18 23:07:53] 2024-05-19 03:07:53,153 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-18 23:07:53] 2024-05-19 03:07:53,155 [wrapper] pilotpid: 1742162
[2024-05-18 23:07:53] 2024-05-19 03:07:53,157 [wrapper] Pilot exit status: 0
[2024-05-18 23:07:53] 2024-05-19 03:07:53,164 [wrapper] pandaids: 6206854445
[2024-05-18 23:07:53] 2024-05-19 03:07:53,211 [wrapper] cleanup: SIGTERM to supervisor_pilot 1903101 1742163
[2024-05-18 23:07:53] 2024-05-19 03:07:53,213 [wrapper] Test setup, not cleaning
[2024-05-18 23:07:53] 2024-05-19 03:07:53,215 [wrapper] ==== wrapper stdout END ====
[2024-05-18 23:07:53] 2024-05-19 03:07:53,217 [wrapper] ==== wrapper stderr END ====
[2024-05-18 23:07:53] 2024-05-19 03:07:53,220 [wrapper] apfmon messages muted
[2024-05-18 23:07:53]  *** Error codes and diagnostics ***
[2024-05-18 23:07:53]     "exeErrorCode": 0,
[2024-05-18 23:07:53]     "exeErrorDiag": "",
[2024-05-18 23:07:53]     "pilotErrorCode": 0,
[2024-05-18 23:07:53]     "pilotErrorDiag": "",
[2024-05-18 23:07:53]  *** Listing of results directory ***
[2024-05-18 23:07:53] total 818988
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc    467845 May 15 11:49 pilot3.tar.gz
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc      5633 May 15 12:09 queuedata.json
[2024-05-18 23:07:53] -rwx------ 1 boinc boinc     32251 May 15 12:10 runpilot2-wrapper.sh
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc       100 May 18 21:54 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-18 23:07:53] -rwxr-xr-x 1 boinc boinc      7986 May 18 21:54 run_atlas
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc       105 May 18 21:54 job.xml
[2024-05-18 23:07:53] -rw-r--r-- 2 boinc boinc    480005 May 18 21:54 input.tar.gz
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc      7599 May 18 21:54 init_data.xml
[2024-05-18 23:07:53] -rw-r--r-- 2 boinc boinc 602978389 May 18 21:54 EVNT.38776100._000280.pool.root.1
[2024-05-18 23:07:53] -rw-r--r-- 2 boinc boinc     17537 May 18 21:54 start_atlas.sh
[2024-05-18 23:07:53] drwxrwx--x 2 boinc boinc      4096 May 18 21:54 shared
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc         0 May 18 21:54 boinc_lockfile
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc      2640 May 18 21:54 pandaJob.out
[2024-05-18 23:07:53] -rw------- 1 boinc boinc       460 May 18 21:54 setup.sh.local
[2024-05-18 23:07:53] -rw------- 1 boinc boinc   1013712 May 18 21:54 agis_schedconf.cvmfs.json
[2024-05-18 23:07:53] -rw------- 1 boinc boinc         0 May 18 21:54 agis_ddmendpoints.agis.ALL.json
[2024-05-18 23:07:53] -rw------- 1 boinc boinc   1324701 May 18 21:54 cric_ddmendpoints.json
[2024-05-18 23:07:53] drwx------ 4 boinc boinc      4096 May 18 21:54 pilot3
[2024-05-18 23:07:53] -rw------- 1 boinc boinc 230489625 May 18 23:06 HITS.38776104._006923.pool.root.1
[2024-05-18 23:07:53] -rw------- 1 boinc boinc        95 May 18 23:06 pilot_heartbeat.json
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc       530 May 18 23:07 boinc_task_state.xml
[2024-05-18 23:07:53] -rw------- 1 boinc boinc      1021 May 18 23:07 memory_monitor_summary.json
[2024-05-18 23:07:53] -rw------- 1 boinc boinc    369134 May 18 23:07 log.38776104._006923.job.log.tgz.1
[2024-05-18 23:07:53] -rw------- 1 boinc boinc      7682 May 18 23:07 heartbeat.json
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc      8192 May 18 23:07 boinc_mmap_file
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc        27 May 18 23:07 wrapper_checkpoint.txt
[2024-05-18 23:07:53] -rw------- 1 boinc boinc      4343 May 18 23:07 pilotlog.txt
[2024-05-18 23:07:53] -rw------- 1 boinc boinc    455053 May 18 23:07 log.38776104._006923.job.log.1
[2024-05-18 23:07:53] -rw------- 1 boinc boinc       357 May 18 23:07 output.list
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc       620 May 18 23:07 runtime_log
[2024-05-18 23:07:53] -rw------- 1 boinc boinc    839680 May 18 23:07 result.tar.gz
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc     11477 May 18 23:07 runtime_log.err
[2024-05-18 23:07:53] -rw------- 1 boinc boinc       640 May 18 23:07 QZ9LDmzNWR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmuXOKDmtIWAQn.diag
[2024-05-18 23:07:53] -rw-r--r-- 1 boinc boinc     21046 May 18 23:07 stderr.txt
[2024-05-18 23:07:53] HITS file was successfully produced:
[2024-05-18 23:07:53] -rw------- 1 boinc boinc 230489625 May 18 23:06 shared/HITS.pool.root.1
[2024-05-18 23:07:53]  *** Contents of shared directory: ***
[2024-05-18 23:07:53] total 815256
[2024-05-18 23:07:53] -rw-r--r-- 2 boinc boinc    480005 May 18 21:54 input.tar.gz
[2024-05-18 23:07:53] -rw-r--r-- 2 boinc boinc 602978389 May 18 21:54 ATLAS.root_0
[2024-05-18 23:07:53] -rw-r--r-- 2 boinc boinc     17537 May 18 21:54 start_atlas.sh
[2024-05-18 23:07:53] -rw------- 1 boinc boinc 230489625 May 18 23:06 HITS.pool.root.1
[2024-05-18 23:07:53] -rw------- 1 boinc boinc    839680 May 18 23:07 result.tar.gz
23:07:54 (1737557): run_atlas exited; CPU time 44057.223847
23:07:54 (1737557): called boinc_finish(0)

</stderr_txt>
]]>

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