Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:49:53 (2567276): wrapper (7.7.26015): starting
14:49:53 (2567276): wrapper: running run_atlas (--nthreads 4)
[2024-05-20 14:49:53] Arguments: --nthreads 4
[2024-05-20 14:49:53] Threads: 4
[2024-05-20 14:49:53] Checking for CVMFS
[2024-05-20 14:49:53] No cvmfs_config command found, will try listing directly
[2024-05-20 14:49:53] CVMFS is ok
[2024-05-20 14:49:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 14:49:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 14:49:53] Further information can be found at the LHC@home message board.
[2024-05-20 14:49:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 14:49:53] Checking for apptainer binary...
[2024-05-20 14:49:53] which: no apptainer in ((null))
[2024-05-20 14:49:53] apptainer is not installed, using version from CVMFS
[2024-05-20 14:49:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 14:49:54] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2024-05-20 14:49:54] apptainer works
[2024-05-20 14:49:54] Set ATHENA_PROC_NUMBER=4
[2024-05-20 14:49:54] Set ATHENA_CORE_NUMBER=4
[2024-05-20 14:49:54] Starting ATLAS job with PandaID=6206829139
[2024-05-20 14:49:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 17:33:05]  *** The last 200 lines of the pilot log: ***
[2024-05-20 17:33:05] 2024-05-20 15:32:44,360 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-20 17:33:05] 2024-05-20 15:32:44,361 | INFO     | fitting pss+swap vs Time
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | model: linear, x: [1716209428.0, 1716209489.0, 1716209550.0, 1716209611.0, 1716209672.0, 1716209733.0, 1716209794.0, 1716209855.0, 1716209916.0, 1716209977.0, 1716
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | sum of square deviations: 1270051720.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | sum of deviations: 53814248129.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | mean x: 1716214277.5
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | mean y: 2246577.9125
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | -- intersect: -72716666768.32307
[2024-05-20 17:33:05] 2024-05-20 15:32:44,362 | INFO     | intersect: -72716666768.32307
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | chi2: 4.6036230530773485
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | model: linear, x: [1716209428.0, 1716209489.0, 1716209550.0, 1716209611.0, 1716209672.0, 1716209733.0, 1716209794.0, 1716209855.0, 1716209916.0, 1716209977.0, 1716
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | sum of square deviations: 1154663510.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | sum of deviations: 61547354281.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | mean x: 1716214125.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | mean y: 2256464.877419355
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | -- intersect: -91477588406.49243
[2024-05-20 17:33:05] 2024-05-20 15:32:44,363 | INFO     | intersect: -91477588406.49243
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | chi2: 3.8488433922588863
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | current chi2=3.8488433922588863 (change=16.395340194369748 %)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | right removable region: 154
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | model: linear, x: [1716209733.0, 1716209794.0, 1716209855.0, 1716209916.0, 1716209977.0, 1716210038.0, 1716210099.0, 1716210160.0, 1716210221.0, 1716210282.0, 1716
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | sum of square deviations: 1154663510.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | sum of deviations: 18526632933.999992
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | mean x: 1716214430.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | mean y: 2293036.870967742
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | -- intersect: -27534452088.679962
[2024-05-20 17:33:05] 2024-05-20 15:32:44,364 | INFO     | intersect: -27534452088.679962
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | chi2: 2.2131031480275407
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | current chi2=2.2131031480275407 (change=51.92692532573524 %)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | model: linear, x: [1716210038.0, 1716210099.0, 1716210160.0, 1716210221.0, 1716210282.0, 1716210343.0, 1716210404.0, 1716210465.0, 1716210526.0, 1716210587.0, 1716
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | sum of square deviations: 1046484737.5
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | sum of deviations: -9229513744.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | mean x: 1716214582.5
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | mean y: 2332172.88
[2024-05-20 17:33:05] 2024-05-20 15:32:44,365 | INFO     | -- intersect: 15138554909.083042
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | intersect: 15138554909.083042
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | chi2: 0.8618176894055888
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | current chi2=0.8618176894055888 (change=61.05840388986405 %)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | model: linear, x: [1716210343.0, 1716210404.0, 1716210465.0, 1716210526.0, 1716210587.0, 1716210648.0, 1716210709.0, 1716210770.0, 1716210831.0, 1716210892.0, 1716
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | sum of square deviations: 945282840.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | sum of deviations: -11244660212.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | mean x: 1716214735.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | mean y: 2335099.5862068967
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | -- intersect: 20417654969.248314
[2024-05-20 17:33:05] 2024-05-20 15:32:44,366 | INFO     | intersect: 20417654969.248314
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | chi2: 0.8192189953424429
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | current chi2=0.8192189953424429 (change=4.942889266119259 %)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | left removable region: 30
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | model: linear, x: [1716211258.0, 1716211319.0, 1716211380.0, 1716211441.0, 1716211502.0, 1716211563.0, 1716211624.0, 1716211685.0, 1716211746.0, 1716211807.0, 1716
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | sum of square deviations: 591173875.0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | sum of deviations: 1614271975.0000002
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | mean x: 1716215009.5
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | mean y: 2342046.14516129
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | -- intersect: -4683991213.947242
[2024-05-20 17:33:05] 2024-05-20 15:32:44,367 | INFO     | intersect: -4683991213.947242
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | chi2: 0.00022093394203466578
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | -- intersect: -4683991213.947242
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | current memory leak: 2.73 B/s (using 124 data points, chi2=0.00)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | ..............................
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . Timing measurements:
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . get job = 0 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . initial setup = 1 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . payload setup = 4 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . stage-in = 0 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . payload execution = 9727 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . stage-out = 0 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | . log creation = 0 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,368 | INFO     | ..............................
[2024-05-20 17:33:05] 2024-05-20 15:32:44,428 | INFO     | 
[2024-05-20 17:33:05] 2024-05-20 15:32:44,429 | INFO     | job summary report
[2024-05-20 17:33:05] 2024-05-20 15:32:44,429 | INFO     | --------------------------------------------------
[2024-05-20 17:33:05] 2024-05-20 15:32:44,429 | INFO     | PanDA job id: 6206829139
[2024-05-20 17:33:05] 2024-05-20 15:32:44,429 | INFO     | task id: 38776104
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | errors: (none)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | pilot state: finished 
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | transexitcode: 0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | exeerrorcode: 0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | exeerrordiag: 
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | exitcode: 0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | exitmsg: OK
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | cpuconsumptiontime: 36148 s
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | nevents: 400
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | neventsw: 0
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | pid: 2578871
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | pgrp: 2578871
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | corecount: 4
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | event service: False
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | sizes: {0: 2392162, 5: 2392368, 11: 2392424, 9735: 2420924, 9737: 2429962, 9745: 2430076}
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | --------------------------------------------------
[2024-05-20 17:33:05] 2024-05-20 15:32:44,430 | INFO     | 
[2024-05-20 17:33:05] 2024-05-20 15:32:44,431 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/1
[2024-05-20 17:33:05] 2024-05-20 15:32:44,448 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,448 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,448 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-20 17:33:05] 2024-05-20 15:32:44,449 | INFO     | job 6206829139 has completed (purged errors)
[2024-05-20 17:33:05] 2024-05-20 15:32:44,450 | INFO     | overall cleanup function is called
[2024-05-20 17:33:05] 2024-05-20 15:32:45,456 | INFO     | --- collectZombieJob: --- 10, [2578871]
[2024-05-20 17:33:05] 2024-05-20 15:32:45,456 | INFO     | zombie collector waiting for pid 2578871
[2024-05-20 17:33:05] 2024-05-20 15:32:45,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-20 17:33:05] 2024-05-20 15:32:46,461 | INFO     | collected zombie processes
[2024-05-20 17:33:05] 2024-05-20 15:32:46,461 | INFO     | will now attempt to kill all subprocesses of pid=2578871
[2024-05-20 17:33:05] 2024-05-20 15:32:46,655 | INFO     | process IDs to be killed: [2578871] (in reverse order)
[2024-05-20 17:33:05] 2024-05-20 15:32:46,774 | WARNING  | found no corresponding commands to process id(s)
[2024-05-20 17:33:05] 2024-05-20 15:32:46,775 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-20 17:33:05] 2024-05-20 15:32:46,783 | INFO     | did not find any defunct processes belonging to 2578871
[2024-05-20 17:33:05] 2024-05-20 15:32:46,790 | INFO     | did not find any defunct processes belonging to 2578871
[2024-05-20 17:33:05] 2024-05-20 15:32:46,790 | INFO     | ready for new job
[2024-05-20 17:33:05] 2024-05-20 15:32:46,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-20 17:33:05] 2024-05-20 15:32:46,792 | INFO     | *************************************
[2024-05-20 17:33:05] 2024-05-20 15:32:46,792 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-20 17:33:05] 2024-05-20 15:32:46,792 | INFO     | *************************************
[2024-05-20 17:33:05] 2024-05-20 15:32:46,792 | INFO     | 
[2024-05-20 17:33:05] 2024-05-20 15:32:46,795 | INFO     | architecture information:
[2024-05-20 17:33:05] 2024-05-20 15:32:46,795 | INFO     | executing command: cat /etc/os-release
[2024-05-20 17:33:05] 2024-05-20 15:32:46,808 | INFO     | cat /etc/os-release:
[2024-05-20 17:33:05] NAME="CentOS Linux"
[2024-05-20 17:33:05] VERSION="7 (Core)"
[2024-05-20 17:33:05] ID="centos"
[2024-05-20 17:33:05] ID_LIKE="rhel fedora"
[2024-05-20 17:33:05] VERSION_ID="7"
[2024-05-20 17:33:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-20 17:33:05] ANSI_COLOR="0;31"
[2024-05-20 17:33:05] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-20 17:33:05] HOME_URL="https://www.centos.org/"
[2024-05-20 17:33:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-20 17:33:05] 
[2024-05-20 17:33:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-20 17:33:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-20 17:33:05] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-20 17:33:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-20 17:33:05] 
[2024-05-20 17:33:05] 2024-05-20 15:32:46,808 | INFO     | *************************************
[2024-05-20 17:33:05] 2024-05-20 15:32:47,310 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/1
[2024-05-20 17:33:05] 2024-05-20 15:32:47,331 | INFO     | sufficient remaining disk space (588771229696 B)
[2024-05-20 17:33:05] 2024-05-20 15:32:47,331 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-20 17:33:05] 2024-05-20 15:32:47,331 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-20 17:33:05] 2024-05-20 15:32:47,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-20 17:33:05] 2024-05-20 15:32:47,332 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 17:33:05] 2024-05-20 15:32:47,332 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 17:33:05] 2024-05-20 15:32:47,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 17:33:05] 2024-05-20 15:32:47,333 | INFO     | found 0 job(s) in 20 queues
[2024-05-20 17:33:05] 2024-05-20 15:32:47,333 | INFO     | aborting loop
[2024-05-20 17:33:05] 2024-05-20 15:32:47,334 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 17:33:05] 2024-05-20 15:32:47,334 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-20 17:33:05] 2024-05-20 15:32:47,446 | INFO     | all job control threads have been joined
[2024-05-20 17:33:05] 2024-05-20 15:32:47,515 | INFO     | all data control threads have been joined
[2024-05-20 17:33:05] 2024-05-20 15:32:48,166 | INFO     | all payload control threads have been joined
[2024-05-20 17:33:05] 2024-05-20 15:32:48,337 | INFO     | [job] retrieve thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,338 | INFO     | [job] job monitor thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,445 | INFO     | [job] validate thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,446 | INFO     | [job] create_data_payload thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,451 | INFO     | [job] control thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,452 | INFO     | [payload] execute_payloads thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,521 | INFO     | [data] control thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,665 | INFO     | [payload] validate_pre thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:48,783 | INFO     | [data] copytool_in thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:49,169 | INFO     | [payload] control thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:49,294 | INFO     | [payload] failed_post thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:49,338 | INFO     | [data] copytool_out thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:49,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-20 17:33:05] 2024-05-20 15:32:49,858 | INFO     | [payload] validate_post thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:50,444 | INFO     | [job] queue monitor thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:51,336 | INFO     | [data] queue_monitor thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:57,811 | INFO     | job.realtimelogging is not enabled
[2024-05-20 17:33:05] 2024-05-20 15:32:58,817 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-20 17:33:05] 2024-05-20 15:32:59,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47433103131712)>', '<ExcThread(monitor, started 47433280685824)>']
[2024-05-20 17:33:05] 2024-05-20 15:32:59,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-20 17:33:05] 2024-05-20 15:32:59,389 | INFO     | [monitor] control thread has ended
[2024-05-20 17:33:05] 2024-05-20 15:33:04,390 | INFO     | all workflow threads have been joined
[2024-05-20 17:33:05] 2024-05-20 15:33:04,390 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-20 17:33:05] 2024-05-20 15:33:04,391 | INFO     | traces error code: 0
[2024-05-20 17:33:05] 2024-05-20 15:33:04,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 17:33:05] 2024-05-20 15:33:04,506 [wrapper] ==== pilot stdout END ====
[2024-05-20 17:33:05] 2024-05-20 15:33:04,508 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-20 17:33:05] 2024-05-20 15:33:04,510 [wrapper] pilotpid: 2571686
[2024-05-20 17:33:05] 2024-05-20 15:33:04,512 [wrapper] Pilot exit status: 0
[2024-05-20 17:33:05] 2024-05-20 15:33:04,519 [wrapper] pandaids: 6206829139
[2024-05-20 17:33:05] 2024-05-20 15:33:04,581 [wrapper] cleanup: SIGTERM to supervisor_pilot 2921698 2571687
[2024-05-20 17:33:05] 2024-05-20 15:33:04,583 [wrapper] Test setup, not cleaning
[2024-05-20 17:33:05] 2024-05-20 15:33:04,585 [wrapper] ==== wrapper stdout END ====
[2024-05-20 17:33:05] 2024-05-20 15:33:04,587 [wrapper] ==== wrapper stderr END ====
[2024-05-20 17:33:05] 2024-05-20 15:33:04,592 [wrapper] apfmon messages muted
[2024-05-20 17:33:05]  *** Error codes and diagnostics ***
[2024-05-20 17:33:05]     "exeErrorCode": 0,
[2024-05-20 17:33:05]     "exeErrorDiag": "",
[2024-05-20 17:33:05]     "pilotErrorCode": 0,
[2024-05-20 17:33:05]     "pilotErrorDiag": "",
[2024-05-20 17:33:05]  *** Listing of results directory ***
[2024-05-20 17:33:05] total 827200
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc    467845 May 15 16:51 pilot3.tar.gz
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc      5633 May 15 17:11 queuedata.json
[2024-05-20 17:33:05] -rwx------ 1 boinc boinc     32251 May 15 17:12 runpilot2-wrapper.sh
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc       100 May 20 14:06 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 17:33:05] -rwxr-xr-x 1 boinc boinc      7986 May 20 14:06 run_atlas
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc       105 May 20 14:06 job.xml
[2024-05-20 17:33:05] -rw-r--r-- 2 boinc boinc 602663618 May 20 14:49 EVNT.38776100._000263.pool.root.1
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc      6663 May 20 14:49 init_data.xml
[2024-05-20 17:33:05] -rw-r--r-- 2 boinc boinc     17537 May 20 14:49 start_atlas.sh
[2024-05-20 17:33:05] drwxrwx--x 2 boinc boinc      4096 May 20 14:49 shared
[2024-05-20 17:33:05] -rw-r--r-- 2 boinc boinc    480004 May 20 14:49 input.tar.gz
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc         0 May 20 14:49 boinc_lockfile
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc      2640 May 20 14:49 pandaJob.out
[2024-05-20 17:33:05] -rw------- 1 boinc boinc       424 May 20 14:49 setup.sh.local
[2024-05-20 17:33:05] -rw------- 1 boinc boinc   1013965 May 20 14:50 agis_schedconf.cvmfs.json
[2024-05-20 17:33:05] -rw------- 1 boinc boinc         0 May 20 14:50 agis_ddmendpoints.agis.ALL.json
[2024-05-20 17:33:05] -rw------- 1 boinc boinc   1324701 May 20 14:50 cric_ddmendpoints.json
[2024-05-20 17:33:05] drwx------ 4 boinc boinc      4096 May 20 14:50 pilot3
[2024-05-20 17:33:05] -rw------- 1 boinc boinc 238201512 May 20 17:32 HITS.38776104._006563.pool.root.1
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc       530 May 20 17:32 boinc_task_state.xml
[2024-05-20 17:33:05] -rw------- 1 boinc boinc        95 May 20 17:32 pilot_heartbeat.json
[2024-05-20 17:33:05] -rw------- 1 boinc boinc      1050 May 20 17:32 memory_monitor_summary.json
[2024-05-20 17:33:05] -rw------- 1 boinc boinc    294212 May 20 17:32 log.38776104._006563.job.log.tgz.1
[2024-05-20 17:33:05] -rw------- 1 boinc boinc      7757 May 20 17:32 heartbeat.json
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc      8192 May 20 17:33 boinc_mmap_file
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc        27 May 20 17:33 wrapper_checkpoint.txt
[2024-05-20 17:33:05] -rw------- 1 boinc boinc      4416 May 20 17:33 pilotlog.txt
[2024-05-20 17:33:05] -rw------- 1 boinc boinc   1033432 May 20 17:33 log.38776104._006563.job.log.1
[2024-05-20 17:33:05] -rw------- 1 boinc boinc       357 May 20 17:33 output.list
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc       620 May 20 17:33 runtime_log
[2024-05-20 17:33:05] -rw------- 1 boinc boinc   1351680 May 20 17:33 result.tar.gz
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc     11409 May 20 17:33 runtime_log.err
[2024-05-20 17:33:05] -rw------- 1 boinc boinc       655 May 20 17:33 K1QKDmwTVR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfUOKDmSBZxVo.diag
[2024-05-20 17:33:05] -rw-r--r-- 1 boinc boinc     21287 May 20 17:33 stderr.txt
[2024-05-20 17:33:05] HITS file was successfully produced:
[2024-05-20 17:33:05] -rw------- 1 boinc boinc 238201512 May 20 17:32 shared/HITS.pool.root.1
[2024-05-20 17:33:05]  *** Contents of shared directory: ***
[2024-05-20 17:33:05] total 822980
[2024-05-20 17:33:05] -rw-r--r-- 2 boinc boinc 602663618 May 20 14:49 ATLAS.root_0
[2024-05-20 17:33:05] -rw-r--r-- 2 boinc boinc     17537 May 20 14:49 start_atlas.sh
[2024-05-20 17:33:05] -rw-r--r-- 2 boinc boinc    480004 May 20 14:49 input.tar.gz
[2024-05-20 17:33:05] -rw------- 1 boinc boinc 238201512 May 20 17:32 HITS.pool.root.1
[2024-05-20 17:33:05] -rw------- 1 boinc boinc   1351680 May 20 17:33 result.tar.gz
17:33:07 (2567276): run_atlas exited; CPU time 35937.439171
17:33:07 (2567276): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN