Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:26:39 (1495392): wrapper (7.7.26015): starting
10:26:39 (1495392): wrapper: running run_atlas (--nthreads 4)
[2024-05-19 10:26:39] Arguments: --nthreads 4
[2024-05-19 10:26:39] Threads: 4
[2024-05-19 10:26:39] Checking for CVMFS
[2024-05-19 10:26:39] No cvmfs_config command found, will try listing directly
[2024-05-19 10:26:39] CVMFS is ok
[2024-05-19 10:26:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-19 10:26:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-19 10:26:39] Further information can be found at the LHC@home message board.
[2024-05-19 10:26:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-19 10:26:39] Checking for apptainer binary...
[2024-05-19 10:26:39] which: no apptainer in ((null))
[2024-05-19 10:26:39] apptainer is not installed, using version from CVMFS
[2024-05-19 10:26:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-19 10:26:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2024-05-19 10:26:40] apptainer works
[2024-05-19 10:26:40] Set ATHENA_PROC_NUMBER=4
[2024-05-19 10:26:40] Set ATHENA_CORE_NUMBER=4
[2024-05-19 10:26:40] Starting ATLAS job with PandaID=6206806299
[2024-05-19 10:26:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-19 12:56:38]  *** The last 200 lines of the pilot log: ***
[2024-05-19 12:56:38] 2024-05-19 10:56:22,234 | INFO     | right removable region: 141
[2024-05-19 12:56:38] 2024-05-19 10:56:22,234 | INFO     | model: linear, x: [1716107539.0, 1716107600.0, 1716107661.0, 1716107722.0, 1716107783.0, 1716107844.0, 1716107905.0, 1716107966.0, 1716108027.0, 1716108088.0, 1716
[2024-05-19 12:56:38] 2024-05-19 10:56:22,235 | INFO     | sum of square deviations: 887813855.5
[2024-05-19 12:56:38] 2024-05-19 10:56:22,235 | INFO     | sum of deviations: 23652217256.5
[2024-05-19 12:56:38] 2024-05-19 10:56:22,235 | INFO     | mean x: 1716111839.5
[2024-05-19 12:56:38] 2024-05-19 10:56:22,236 | INFO     | mean y: 2303441.3732394367
[2024-05-19 12:56:38] 2024-05-19 10:56:22,236 | INFO     | -- intersect: -45716570861.89658
[2024-05-19 12:56:38] 2024-05-19 10:56:22,236 | INFO     | intersect: -45716570861.89658
[2024-05-19 12:56:38] 2024-05-19 10:56:22,236 | INFO     | chi2: 1.4160691753421932
[2024-05-19 12:56:38] 2024-05-19 10:56:22,236 | INFO     | current chi2=1.4160691753421932 (change=63.099514482221366 %)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,236 | INFO     | model: linear, x: [1716107844.0, 1716107905.0, 1716107966.0, 1716108027.0, 1716108088.0, 1716108149.0, 1716108210.0, 1716108271.0, 1716108332.0, 1716108393.0, 1716
[2024-05-19 12:56:38] 2024-05-19 10:56:22,237 | INFO     | sum of square deviations: 797291228.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,237 | INFO     | sum of deviations: -2014331996.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,237 | INFO     | mean x: 1716111992.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | mean y: 2346692.1532846717
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | -- intersect: 4338051354.1452465
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | intersect: 4338051354.1452465
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | chi2: 0.03550665683305589
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | current chi2=0.03550665683305589 (change=97.49259023137229 %)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | model: linear, x: [1716108149.0, 1716108210.0, 1716108271.0, 1716108332.0, 1716108393.0, 1716108454.0, 1716108515.0, 1716108576.0, 1716108637.0, 1716108698.0, 1716
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | sum of square deviations: 713140813.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | sum of deviations: -3391350113.5000005
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | mean x: 1716112144.5
[2024-05-19 12:56:38] 2024-05-19 10:56:22,238 | INFO     | mean y: 2349070.371212121
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | -- intersect: 8163341976.590988
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | intersect: 8163341976.590988
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | chi2: 0.004049638714372884
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | current chi2=0.004049638714372884 (change=88.59470568177301 %)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | model: linear, x: [1716108454.0, 1716108515.0, 1716108576.0, 1716108637.0, 1716108698.0, 1716108759.0, 1716108820.0, 1716108881.0, 1716108942.0, 1716109003.0, 1716
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | sum of square deviations: 635130048.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | sum of deviations: -2539878166.9999995
[2024-05-19 12:56:38] 2024-05-19 10:56:22,239 | INFO     | mean x: 1716112297.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | mean y: 2347423.590551181
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | -- intersect: 6865061869.2319565
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | intersect: 6865061869.2319565
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | chi2: 0.0029491134759046743
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | current chi2=0.0029491134759046743 (change=27.175886939302785 %)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | model: linear, x: [1716108759.0, 1716108820.0, 1716108881.0, 1716108942.0, 1716109003.0, 1716109064.0, 1716109125.0, 1716109186.0, 1716109247.0, 1716109308.0, 1716
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | sum of square deviations: 563026370.5
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | sum of deviations: -1989676802.4999995
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | mean x: 1716112449.5
[2024-05-19 12:56:38] 2024-05-19 10:56:22,240 | INFO     | mean y: 2346262.7786885244
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | -- intersect: 6066909683.172871
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | intersect: 6066909683.172871
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | chi2: 0.00274526662194071
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | current chi2=0.00274526662194071 (change=6.912140059359093 %)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | left removable region: 50
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | model: linear, x: [1716110284.0, 1716110345.0, 1716110406.0, 1716110467.0, 1716110528.0, 1716110589.0, 1716110650.0, 1716110711.0, 1716110772.0, 1716110833.0, 1716
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | sum of square deviations: 233641590.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | sum of deviations: 102269305.99999999
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | mean x: 1716113029.0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | mean y: 2340383.4945054944
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | -- intersect: -748834475.7991153
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | intersect: -748834475.7991153
[2024-05-19 12:56:38] 2024-05-19 10:56:22,241 | INFO     | chi2: 3.60701234861256e-06
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | -- intersect: -748834475.7991153
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | current memory leak: 0.44 B/s (using 91 data points, chi2=0.00)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | ..............................
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | . Timing measurements:
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | . get job = 0 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | . initial setup = 0 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | . payload setup = 5 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,242 | INFO     | . stage-in = 0 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,243 | INFO     | . payload execution = 8941 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,243 | INFO     | . stage-out = 0 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,243 | INFO     | . log creation = 0 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,243 | INFO     | ..............................
[2024-05-19 12:56:38] 2024-05-19 10:56:22,424 | WARNING  | process 1507625 is no longer using CPU - aborting
[2024-05-19 12:56:38] 2024-05-19 10:56:22,425 | INFO     | aborting job monitoring since job object (job id=6206806299) has expired
[2024-05-19 12:56:38] 2024-05-19 10:56:22,568 | INFO     | 
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | job summary report
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | --------------------------------------------------
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | PanDA job id: 6206806299
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | task id: 38776104
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | errors: (none)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | pilot state: finished 
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | transexitcode: 0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | exeerrorcode: 0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | exeerrordiag: 
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | exitcode: 0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | exitmsg: OK
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | cpuconsumptiontime: 32973 s
[2024-05-19 12:56:38] 2024-05-19 10:56:22,569 | INFO     | nevents: 400
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | neventsw: 0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | pid: 1507625
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | pgrp: 1507625
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | corecount: 4
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | event service: False
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | sizes: {0: 2392162, 4: 2392368, 11: 2392396, 8950: 2420593, 8951: 2429631, 8957: 2429745}
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | --------------------------------------------------
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | 
[2024-05-19 12:56:38] 2024-05-19 10:56:22,570 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2024-05-19 12:56:38] 2024-05-19 10:56:22,593 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,597 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-19 12:56:38] 2024-05-19 10:56:22,597 | INFO     | job 6206806299 has completed (purged errors)
[2024-05-19 12:56:38] 2024-05-19 10:56:22,597 | INFO     | overall cleanup function is called
[2024-05-19 12:56:38] 2024-05-19 10:56:23,606 | INFO     | --- collectZombieJob: --- 10, [1507625]
[2024-05-19 12:56:38] 2024-05-19 10:56:23,607 | INFO     | zombie collector waiting for pid 1507625
[2024-05-19 12:56:38] 2024-05-19 10:56:23,607 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-19 12:56:38] 2024-05-19 10:56:24,612 | INFO     | collected zombie processes
[2024-05-19 12:56:38] 2024-05-19 10:56:24,612 | INFO     | will now attempt to kill all subprocesses of pid=1507625
[2024-05-19 12:56:38] 2024-05-19 10:56:24,864 | INFO     | process IDs to be killed: [1507625] (in reverse order)
[2024-05-19 12:56:38] 2024-05-19 10:56:25,038 | WARNING  | found no corresponding commands to process id(s)
[2024-05-19 12:56:38] 2024-05-19 10:56:25,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-19 12:56:38] 2024-05-19 10:56:25,052 | INFO     | did not find any defunct processes belonging to 1507625
[2024-05-19 12:56:38] 2024-05-19 10:56:25,061 | INFO     | did not find any defunct processes belonging to 1507625
[2024-05-19 12:56:38] 2024-05-19 10:56:25,061 | INFO     | ready for new job
[2024-05-19 12:56:38] 2024-05-19 10:56:25,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-19 12:56:38] 2024-05-19 10:56:25,062 | INFO     | *************************************
[2024-05-19 12:56:38] 2024-05-19 10:56:25,063 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-19 12:56:38] 2024-05-19 10:56:25,063 | INFO     | *************************************
[2024-05-19 12:56:38] 2024-05-19 10:56:25,063 | INFO     | 
[2024-05-19 12:56:38] 2024-05-19 10:56:25,067 | INFO     | architecture information:
[2024-05-19 12:56:38] 2024-05-19 10:56:25,068 | INFO     | executing command: cat /etc/os-release
[2024-05-19 12:56:38] 2024-05-19 10:56:25,085 | INFO     | cat /etc/os-release:
[2024-05-19 12:56:38] NAME="CentOS Linux"
[2024-05-19 12:56:38] VERSION="7 (Core)"
[2024-05-19 12:56:38] ID="centos"
[2024-05-19 12:56:38] ID_LIKE="rhel fedora"
[2024-05-19 12:56:38] VERSION_ID="7"
[2024-05-19 12:56:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-19 12:56:38] ANSI_COLOR="0;31"
[2024-05-19 12:56:38] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-19 12:56:38] HOME_URL="https://www.centos.org/"
[2024-05-19 12:56:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-19 12:56:38] 
[2024-05-19 12:56:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-19 12:56:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-19 12:56:38] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-19 12:56:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-19 12:56:38] 
[2024-05-19 12:56:38] 2024-05-19 10:56:25,086 | INFO     | *************************************
[2024-05-19 12:56:38] 2024-05-19 10:56:25,588 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2024-05-19 12:56:38] 2024-05-19 10:56:25,611 | INFO     | sufficient remaining disk space (3110214828032 B)
[2024-05-19 12:56:38] 2024-05-19 10:56:25,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-19 12:56:38] 2024-05-19 10:56:25,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-19 12:56:38] 2024-05-19 10:56:25,612 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-19 12:56:38] 2024-05-19 10:56:25,613 | INFO     | found 0 job(s) in 20 queues
[2024-05-19 12:56:38] 2024-05-19 10:56:25,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-19 12:56:38] 2024-05-19 10:56:25,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-19 12:56:38] 2024-05-19 10:56:25,720 | INFO     | all data control threads have been joined
[2024-05-19 12:56:38] 2024-05-19 10:56:25,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-19 12:56:38] 2024-05-19 10:56:25,933 | INFO     | aborting loop
[2024-05-19 12:56:38] 2024-05-19 10:56:26,178 | INFO     | all payload control threads have been joined
[2024-05-19 12:56:38] 2024-05-19 10:56:26,461 | INFO     | all job control threads have been joined
[2024-05-19 12:56:38] 2024-05-19 10:56:26,617 | INFO     | [job] retrieve thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,726 | INFO     | [data] control thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,809 | INFO     | [payload] failed_post thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,855 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-19 12:56:38] 2024-05-19 10:56:26,861 | INFO     | [job] validate thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,907 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,938 | INFO     | [job] job monitor thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,942 | INFO     | [job] create_data_payload thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:26,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-19 12:56:38] 2024-05-19 10:56:27,019 | INFO     | [payload] validate_pre thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:27,183 | INFO     | [payload] control thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:27,193 | INFO     | [payload] validate_post thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:27,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-19 12:56:38] 2024-05-19 10:56:27,461 | INFO     | [job] control thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:27,820 | INFO     | [data] copytool_in thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:27,924 | INFO     | [payload] execute_payloads thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:28,323 | INFO     | [job] queue monitor thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:28,860 | INFO     | [data] copytool_out thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:30,954 | INFO     | [data] queue_monitor thread has finished
[2024-05-19 12:56:38] 2024-05-19 10:56:32,865 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47091911631936)>', '<ExcThread(monitor, started 47092089186048)>']
[2024-05-19 12:56:38] 2024-05-19 10:56:33,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-19 12:56:38] 2024-05-19 10:56:33,653 | INFO     | [monitor] control thread has ended
[2024-05-19 12:56:38] 2024-05-19 10:56:37,889 | INFO     | all workflow threads have been joined
[2024-05-19 12:56:38] 2024-05-19 10:56:37,890 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-19 12:56:38] 2024-05-19 10:56:37,890 | INFO     | traces error code: 0
[2024-05-19 12:56:38] 2024-05-19 10:56:37,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-19 12:56:38] 2024-05-19 10:56:37,987 [wrapper] ==== pilot stdout END ====
[2024-05-19 12:56:38] 2024-05-19 10:56:37,989 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-19 12:56:38] 2024-05-19 10:56:37,992 [wrapper] pilotpid: 1500081
[2024-05-19 12:56:38] 2024-05-19 10:56:37,994 [wrapper] Pilot exit status: 0
[2024-05-19 12:56:38] 2024-05-19 10:56:38,013 [wrapper] pandaids: 6206806299
[2024-05-19 12:56:38] 2024-05-19 10:56:38,122 [wrapper] cleanup: SIGTERM to supervisor_pilot 2084906 1500082
[2024-05-19 12:56:38] 2024-05-19 10:56:38,125 [wrapper] Test setup, not cleaning
[2024-05-19 12:56:38] 2024-05-19 10:56:38,127 [wrapper] ==== wrapper stdout END ====
[2024-05-19 12:56:38] 2024-05-19 10:56:38,130 [wrapper] ==== wrapper stderr END ====
[2024-05-19 12:56:38] 2024-05-19 10:56:38,134 [wrapper] apfmon messages muted
[2024-05-19 12:56:38]  *** Error codes and diagnostics ***
[2024-05-19 12:56:38]     "exeErrorCode": 0,
[2024-05-19 12:56:38]     "exeErrorDiag": "",
[2024-05-19 12:56:38]     "pilotErrorCode": 0,
[2024-05-19 12:56:38]     "pilotErrorDiag": "",
[2024-05-19 12:56:38]  *** Listing of results directory ***
[2024-05-19 12:56:38] total 816680
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc    467845 May 15 16:23 pilot3.tar.gz
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc      5633 May 15 16:25 queuedata.json
[2024-05-19 12:56:38] -rwx------ 1 boinc boinc     32251 May 15 16:25 runpilot2-wrapper.sh
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc       100 May 19 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-19 12:56:38] -rwxr-xr-x 1 boinc boinc      7986 May 19 10:26 run_atlas
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc       105 May 19 10:26 job.xml
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc      6643 May 19 10:26 init_data.xml
[2024-05-19 12:56:38] -rw-r--r-- 2 boinc boinc 600219681 May 19 10:26 EVNT.38776100._000257.pool.root.1
[2024-05-19 12:56:38] -rw-r--r-- 2 boinc boinc     17537 May 19 10:26 start_atlas.sh
[2024-05-19 12:56:38] drwxrwx--x 2 boinc boinc      4096 May 19 10:26 shared
[2024-05-19 12:56:38] -rw-r--r-- 2 boinc boinc    480001 May 19 10:26 input.tar.gz
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc         0 May 19 10:26 boinc_lockfile
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc      2640 May 19 10:26 pandaJob.out
[2024-05-19 12:56:38] -rw------- 1 boinc boinc       424 May 19 10:26 setup.sh.local
[2024-05-19 12:56:38] -rw------- 1 boinc boinc   1014045 May 19 10:26 agis_schedconf.cvmfs.json
[2024-05-19 12:56:38] -rw------- 1 boinc boinc         0 May 19 10:26 agis_ddmendpoints.agis.ALL.json
[2024-05-19 12:56:38] -rw------- 1 boinc boinc   1324701 May 19 10:26 cric_ddmendpoints.json
[2024-05-19 12:56:38] drwx------ 4 boinc boinc      4096 May 19 10:26 pilot3
[2024-05-19 12:56:38] -rw------- 1 boinc boinc 230125545 May 19 12:55 HITS.38776104._006412.pool.root.1
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc       530 May 19 12:55 boinc_task_state.xml
[2024-05-19 12:56:38] -rw------- 1 boinc boinc      1052 May 19 12:56 memory_monitor_summary.json
[2024-05-19 12:56:38] -rw------- 1 boinc boinc        95 May 19 12:56 pilot_heartbeat.json
[2024-05-19 12:56:38] -rw------- 1 boinc boinc    284078 May 19 12:56 log.38776104._006412.job.log.tgz.1
[2024-05-19 12:56:38] -rw------- 1 boinc boinc      7708 May 19 12:56 heartbeat.json
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc      8192 May 19 12:56 boinc_mmap_file
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc        27 May 19 12:56 wrapper_checkpoint.txt
[2024-05-19 12:56:38] -rw------- 1 boinc boinc      4345 May 19 12:56 pilotlog.txt
[2024-05-19 12:56:38] -rw------- 1 boinc boinc    918326 May 19 12:56 log.38776104._006412.job.log.1
[2024-05-19 12:56:38] -rw------- 1 boinc boinc       357 May 19 12:56 output.list
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc       620 May 19 12:56 runtime_log
[2024-05-19 12:56:38] -rw------- 1 boinc boinc   1218560 May 19 12:56 result.tar.gz
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc     11409 May 19 12:56 runtime_log.err
[2024-05-19 12:56:38] -rw------- 1 boinc boinc       655 May 19 12:56 VjSKDm5kUR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmrWJKDmH1yAGo.diag
[2024-05-19 12:56:38] -rw-r--r-- 1 boinc boinc     21400 May 19 12:56 stderr.txt
[2024-05-19 12:56:38] HITS file was successfully produced:
[2024-05-19 12:56:38] -rw------- 1 boinc boinc 230125545 May 19 12:55 shared/HITS.pool.root.1
[2024-05-19 12:56:38]  *** Contents of shared directory: ***
[2024-05-19 12:56:38] total 812580
[2024-05-19 12:56:38] -rw-r--r-- 2 boinc boinc 600219681 May 19 10:26 ATLAS.root_0
[2024-05-19 12:56:38] -rw-r--r-- 2 boinc boinc     17537 May 19 10:26 start_atlas.sh
[2024-05-19 12:56:38] -rw-r--r-- 2 boinc boinc    480001 May 19 10:26 input.tar.gz
[2024-05-19 12:56:38] -rw------- 1 boinc boinc 230125545 May 19 12:55 HITS.pool.root.1
[2024-05-19 12:56:38] -rw------- 1 boinc boinc   1218560 May 19 12:56 result.tar.gz
12:56:40 (1495392): run_atlas exited; CPU time 32771.873878
12:56:40 (1495392): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN