Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:55:49 (3953107): wrapper (7.7.26015): starting
13:55:49 (3953107): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 13:55:49] Arguments: --nthreads 8
[2024-05-15 13:55:49] Threads: 8
[2024-05-15 13:55:49] Checking for CVMFS
[2024-05-15 13:55:49] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 13:55:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 13:55:50] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 13:55:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 13:55:50] 2.11.2.0 911815 3981 79692 132768 1 188 17344418 18432001 3989 130560 0 17561937 99.975 1398379 6688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-15 13:55:50] CVMFS is ok
[2024-05-15 13:55:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 13:55:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 13:55:50] Further information can be found at the LHC@home message board.
[2024-05-15 13:55:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 13:55:50] Checking for apptainer binary...
[2024-05-15 13:55:50] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 13:55:50] Running /usr/bin/apptainer --version
[2024-05-15 13:55:50] apptainer version 1.2.4-1.el7
[2024-05-15 13:55:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 13:55:51] gc-9-36.aglt2.org
[2024-05-15 13:55:51] apptainer works
[2024-05-15 13:55:51] Set ATHENA_PROC_NUMBER=8
[2024-05-15 13:55:51] Set ATHENA_CORE_NUMBER=8
[2024-05-15 13:55:51] Starting ATLAS job with PandaID=6206779089
[2024-05-15 13:55:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/data/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 15:34:48]  *** The last 200 lines of the pilot log: ***
[2024-05-15 15:34:48]  filesize=322193
[2024-05-15 15:34:48]  filetype=log
[2024-05-15 15:34:48]  guid=e923f550-4e79-4c0a-b357-72aa81fb3dd1
[2024-05-15 15:34:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-05-15 15:34:48]  is_tar=False
[2024-05-15 15:34:48]  lfn=log.38776104._006043.job.log.tgz.1
[2024-05-15 15:34:48]  mtime=0
[2024-05-15 15:34:48]  protocol_id=None
[2024-05-15 15:34:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-15 15:34:48]  replicas=None
[2024-05-15 15:34:48]  scope=mc23_13p6TeV
[2024-05-15 15:34:48]  status=None
[2024-05-15 15:34:48]  status_code=0
[2024-05-15 15:34:48]  storage_token=
[2024-05-15 15:34:48]  surl=/data/boinchome/slots/4/PanDA_Pilot-6206779089/log.38776104._006043.job.log.tgz.1
[2024-05-15 15:34:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/bd/log.38776104._006043.job.log.tgz.1
[2024-05-15 15:34:48]  workdir=None
[2024-05-15 15:34:48] ]
[2024-05-15 15:34:48] 2024-05-15 19:34:26,012 | INFO     | transferring file log.38776104._006043.job.log.tgz.1 from /data/boinchome/slots/4/PanDA_Pilot-6206779089/log.38776104._006043.job.log.tgz.1 to /data/boinchome/slot
[2024-05-15 15:34:48] 2024-05-15 19:34:26,013 | INFO     | executing command: /usr/bin/env mv /data/boinchome/slots/4/PanDA_Pilot-6206779089/log.38776104._006043.job.log.tgz.1 /data/boinchome/slots/4/log.38776104._006043.j
[2024-05-15 15:34:48] 2024-05-15 19:34:26,030 | INFO     | adding to output.list: log.38776104._006043.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/bd/log.38776104._006043.job.log.tg
[2024-05-15 15:34:48] 2024-05-15 19:34:26,031 | INFO     | summary of transferred files:
[2024-05-15 15:34:48] 2024-05-15 19:34:26,031 | INFO     |  -- lfn=log.38776104._006043.job.log.tgz.1, status_code=0, status=transferred
[2024-05-15 15:34:48] 2024-05-15 19:34:26,031 | INFO     | stage-out finished correctly
[2024-05-15 15:34:48] 2024-05-15 19:34:26,721 | INFO     | 5905s have passed since pilot start
[2024-05-15 15:34:48] 2024-05-15 19:34:26,839 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-15 15:34:48] 2024-05-15 19:34:26,915 | INFO     | monitor loop #450: job 0:6206779089 is in state 'finished'
[2024-05-15 15:34:48] 2024-05-15 19:34:26,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 15:34:48] 2024-05-15 19:34:28,921 | INFO     | job 6206779089 has state=finished
[2024-05-15 15:34:48] 2024-05-15 19:34:28,921 | INFO     | preparing for final server update for job 6206779089 in state='finished'
[2024-05-15 15:34:48] 2024-05-15 19:34:28,922 | INFO     | this job has now completed (state=finished)
[2024-05-15 15:34:48] 2024-05-15 19:34:28,922 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-15 15:34:48] 2024-05-15 19:34:28,922 | INFO     | job 6206779089 has finished - writing final server update
[2024-05-15 15:34:48] 2024-05-15 19:34:28,923 | INFO     | total number of processed events: 400 (read)
[2024-05-15 15:34:48] 2024-05-15 19:34:28,926 | INFO     | executing command: lscpu
[2024-05-15 15:34:48] 2024-05-15 19:34:28,973 | INFO     | found 24 cores (12 cores per socket, 2 sockets)
[2024-05-15 15:34:48] 2024-05-15 19:34:28,973 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-15 15:34:48] 2024-05-15 19:34:29,006 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-15 15:34:48] 2024-05-15 19:34:29,421 | INFO     | monitor loop #451: job 0:6206779089 is in state 'finished'
[2024-05-15 15:34:48] 2024-05-15 19:34:29,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 15:34:48] 2024-05-15 19:34:31,924 | INFO     | monitor loop #452: job 0:6206779089 is in state 'finished'
[2024-05-15 15:34:48] 2024-05-15 19:34:31,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-15 15:34:48] 2024-05-15 19:34:32,556 | INFO     | CPU arch script returned: x86-64-v4
[2024-05-15 15:34:48] 2024-05-15 19:34:32,556 | INFO     | using path: /data/boinchome/slots/4/PanDA_Pilot-6206779089/memory_monitor_summary.json (trf name=prmon)
[2024-05-15 15:34:48] 2024-05-15 19:34:32,557 | INFO     | extracted standard info from prmon json
[2024-05-15 15:34:48] 2024-05-15 19:34:32,557 | INFO     | extracted standard memory fields from prmon json
[2024-05-15 15:34:48] 2024-05-15 19:34:32,557 | WARNING  | GPU info not found in prmon json
[2024-05-15 15:34:48] 2024-05-15 19:34:32,558 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-15 15:34:48] 2024-05-15 19:34:32,558 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-15 15:34:48] 2024-05-15 19:34:32,560 | INFO     | fitting pss+swap vs Time
[2024-05-15 15:34:48] 2024-05-15 19:34:32,560 | INFO     | model: linear, x: [1715796093.0, 1715796154.0, 1715796215.0, 1715796276.0, 1715796337.0, 1715796398.0, 1715796459.0, 1715796520.0, 1715796581.0, 1715796642.0, 1715
[2024-05-15 15:34:48] 2024-05-15 19:34:32,560 | INFO     | sum of square deviations: 226022842.5
[2024-05-15 15:34:48] 2024-05-15 19:34:32,560 | INFO     | sum of deviations: 8827748834.0
[2024-05-15 15:34:48] 2024-05-15 19:34:32,560 | INFO     | mean x: 1715798807.5
[2024-05-15 15:34:48] 2024-05-15 19:34:32,560 | INFO     | mean y: 2504974.5555555555
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | -- intersect: -67011256797.27383
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | intersect: -67011256797.27383
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | chi2: 0.43259581755459126
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | -- intersect: -67011256797.27383
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | current memory leak: 39.06 B/s (using 90 data points, chi2=0.43)
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | ..............................
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | . Timing measurements:
[2024-05-15 15:34:48] 2024-05-15 19:34:32,561 | INFO     | . get job = 0 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | . initial setup = 1 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | . payload setup = 4 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | . stage-in = 0 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | . payload execution = 5878 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | . stage-out = 0 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | . log creation = 0 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,562 | INFO     | ..............................
[2024-05-15 15:34:48] 2024-05-15 19:34:32,642 | INFO     | 
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | job summary report
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | --------------------------------------------------
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | PanDA job id: 6206779089
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | task id: 38776104
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | errors: (none)
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | pilot state: finished 
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | transexitcode: 0
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | exeerrorcode: 0
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | exeerrordiag: 
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | exitcode: 0
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | exitmsg: OK
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | cpuconsumptiontime: 36352 s
[2024-05-15 15:34:48] 2024-05-15 19:34:32,643 | INFO     | nevents: 400
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | neventsw: 0
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | pid: 3967359
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | pgrp: 3967359
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | corecount: 8
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | event service: False
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | sizes: {0: 2392031, 1: 2392230, 4: 2392436, 11: 2392464, 5887: 2419103, 5888: 2428065, 5889: 2428249, 5895: 2428419}
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | --------------------------------------------------
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | 
[2024-05-15 15:34:48] 2024-05-15 19:34:32,644 | INFO     | executing command: ls -lF /data/boinchome/slots/4
[2024-05-15 15:34:48] 2024-05-15 19:34:32,666 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,666 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,666 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,666 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,667 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 15:34:48] 2024-05-15 19:34:32,668 | INFO     | job 6206779089 has completed (purged errors)
[2024-05-15 15:34:48] 2024-05-15 19:34:32,668 | INFO     | overall cleanup function is called
[2024-05-15 15:34:48] 2024-05-15 19:34:33,676 | INFO     | --- collectZombieJob: --- 10, [3967359]
[2024-05-15 15:34:48] 2024-05-15 19:34:33,676 | INFO     | zombie collector waiting for pid 3967359
[2024-05-15 15:34:48] 2024-05-15 19:34:33,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 15:34:48] 2024-05-15 19:34:34,681 | INFO     | collected zombie processes
[2024-05-15 15:34:48] 2024-05-15 19:34:34,682 | INFO     | will now attempt to kill all subprocesses of pid=3967359
[2024-05-15 15:34:48] 2024-05-15 19:34:34,780 | INFO     | process IDs to be killed: [3967359] (in reverse order)
[2024-05-15 15:34:48] 2024-05-15 19:34:34,841 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 15:34:48] 2024-05-15 19:34:34,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 15:34:48] 2024-05-15 19:34:34,845 | INFO     | did not find any defunct processes belonging to 3967359
[2024-05-15 15:34:48] 2024-05-15 19:34:34,849 | INFO     | did not find any defunct processes belonging to 3967359
[2024-05-15 15:34:48] 2024-05-15 19:34:34,849 | INFO     | ready for new job
[2024-05-15 15:34:48] 2024-05-15 19:34:34,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 15:34:48] 2024-05-15 19:34:34,850 | INFO     | *************************************
[2024-05-15 15:34:48] 2024-05-15 19:34:34,850 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 15:34:48] 2024-05-15 19:34:34,850 | INFO     | *************************************
[2024-05-15 15:34:48] 2024-05-15 19:34:34,850 | INFO     | 
[2024-05-15 15:34:48] 2024-05-15 19:34:34,852 | INFO     | architecture information:
[2024-05-15 15:34:48] 2024-05-15 19:34:34,852 | INFO     | executing command: cat /etc/os-release
[2024-05-15 15:34:48] 2024-05-15 19:34:34,864 | INFO     | cat /etc/os-release:
[2024-05-15 15:34:48] NAME="CentOS Linux"
[2024-05-15 15:34:48] VERSION="7 (Core)"
[2024-05-15 15:34:48] ID="centos"
[2024-05-15 15:34:48] ID_LIKE="rhel fedora"
[2024-05-15 15:34:48] VERSION_ID="7"
[2024-05-15 15:34:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 15:34:48] ANSI_COLOR="0;31"
[2024-05-15 15:34:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 15:34:48] HOME_URL="https://www.centos.org/"
[2024-05-15 15:34:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 15:34:48] 
[2024-05-15 15:34:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 15:34:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 15:34:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 15:34:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 15:34:48] 
[2024-05-15 15:34:48] 2024-05-15 19:34:34,864 | INFO     | *************************************
[2024-05-15 15:34:48] 2024-05-15 19:34:35,366 | INFO     | executing command: df -mP /data/boinchome/slots/4
[2024-05-15 15:34:48] 2024-05-15 19:34:35,385 | INFO     | sufficient remaining disk space (905487319040 B)
[2024-05-15 15:34:48] 2024-05-15 19:34:35,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 15:34:48] 2024-05-15 19:34:35,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 15:34:48] 2024-05-15 19:34:35,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 15:34:48] 2024-05-15 19:34:35,432 | INFO     | aborting loop
[2024-05-15 15:34:48] 2024-05-15 19:34:35,749 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 15:34:48] 2024-05-15 19:34:35,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 15:34:48] 2024-05-15 19:34:35,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 15:34:48] 2024-05-15 19:34:35,962 | INFO     | all data control threads have been joined
[2024-05-15 15:34:48] 2024-05-15 19:34:36,316 | INFO     | all payload control threads have been joined
[2024-05-15 15:34:48] 2024-05-15 19:34:36,391 | INFO     | [job] retrieve thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,437 | INFO     | [job] job monitor thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,541 | INFO     | [payload] validate_post thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,564 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 15:34:48] 2024-05-15 19:34:36,717 | INFO     | [data] copytool_in thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,818 | INFO     | [payload] failed_post thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,967 | INFO     | [data] control thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:36,969 | INFO     | all job control threads have been joined
[2024-05-15 15:34:48] 2024-05-15 19:34:36,972 | INFO     | [job] validate thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:37,261 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:37,317 | INFO     | [payload] control thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:37,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 15:34:48] 2024-05-15 19:34:37,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 15:34:48] 2024-05-15 19:34:37,703 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:37,853 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:37,973 | INFO     | [job] control thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:38,628 | INFO     | [data] copytool_out thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:38,655 | INFO     | [job] queue monitor thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:41,430 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 15:34:48] 2024-05-15 19:34:43,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956305168192)>', '<ExcThread(monitor, started 139955653302016)>']
[2024-05-15 15:34:48] 2024-05-15 19:34:43,788 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 15:34:48] 2024-05-15 19:34:43,788 | INFO     | [monitor] control thread has ended
[2024-05-15 15:34:48] 2024-05-15 19:34:48,232 | INFO     | all workflow threads have been joined
[2024-05-15 15:34:48] 2024-05-15 19:34:48,232 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 15:34:48] 2024-05-15 19:34:48,233 | INFO     | traces error code: 0
[2024-05-15 15:34:48] 2024-05-15 19:34:48,233 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 15:34:48] 2024-05-15 19:34:48,305 [wrapper] ==== pilot stdout END ====
[2024-05-15 15:34:48] 2024-05-15 19:34:48,307 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 15:34:48] 2024-05-15 19:34:48,310 [wrapper] pilotpid: 3958867
[2024-05-15 15:34:48] 2024-05-15 19:34:48,312 [wrapper] Pilot exit status: 0
[2024-05-15 15:34:48] 2024-05-15 19:34:48,320 [wrapper] pandaids: 6206779089
[2024-05-15 15:34:48] 2024-05-15 19:34:48,373 [wrapper] cleanup: SIGTERM to supervisor_pilot  140459 3958868
[2024-05-15 15:34:48] 2024-05-15 19:34:48,375 [wrapper] Test setup, not cleaning
[2024-05-15 15:34:48] 2024-05-15 19:34:48,378 [wrapper] ==== wrapper stdout END ====
[2024-05-15 15:34:48] 2024-05-15 19:34:48,380 [wrapper] ==== wrapper stderr END ====
[2024-05-15 15:34:48] 2024-05-15 19:34:48,384 [wrapper] apfmon messages muted
[2024-05-15 15:34:48]  *** Error codes and diagnostics ***
[2024-05-15 15:34:48]     "exeErrorCode": 0,
[2024-05-15 15:34:48]     "exeErrorDiag": "",
[2024-05-15 15:34:48]     "pilotErrorCode": 0,
[2024-05-15 15:34:48]     "pilotErrorDiag": "",
[2024-05-15 15:34:48]  *** Listing of results directory ***
[2024-05-15 15:34:48] total 821232
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas    467845 May 15 09:36 pilot3.tar.gz
[2024-05-15 15:34:48] -rwx------ 1 boincer umatlas     32251 May 15 09:45 runpilot2-wrapper.sh
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas      5633 May 15 09:45 queuedata.json
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas       100 May 15 13:55 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 15:34:48] -rwxr-xr-x 1 boincer umatlas      7986 May 15 13:55 run_atlas
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas       105 May 15 13:55 job.xml
[2024-05-15 15:34:48] -rw-r--r-- 2 boincer umatlas 602276321 May 15 13:55 EVNT.38776100._000238.pool.root.1
[2024-05-15 15:34:48] drwxrwx--x 2 boincer umatlas      4096 May 15 13:55 shared
[2024-05-15 15:34:48] -rw-r--r-- 2 boincer umatlas    480007 May 15 13:55 input.tar.gz
[2024-05-15 15:34:48] -rw-r--r-- 2 boincer umatlas     17537 May 15 13:55 start_atlas.sh
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas         0 May 15 13:55 boinc_lockfile
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas      2640 May 15 13:55 pandaJob.out
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas       461 May 15 13:55 setup.sh.local
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas   1011265 May 15 13:56 agis_schedconf.cvmfs.json
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas         0 May 15 13:56 agis_ddmendpoints.agis.ALL.json
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas   1324701 May 15 13:56 cric_ddmendpoints.json
[2024-05-15 15:34:48] drwx------ 4 boincer umatlas      4096 May 15 13:56 pilot3
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas      9220 May 15 15:27 init_data.xml
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas 233288785 May 15 15:33 HITS.38776104._006043.pool.root.1
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas       530 May 15 15:34 boinc_task_state.xml
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas      1046 May 15 15:34 memory_monitor_summary.json
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas        95 May 15 15:34 pilot_heartbeat.json
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas    322193 May 15 15:34 log.38776104._006043.job.log.tgz.1
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas      7736 May 15 15:34 heartbeat.json
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas      4213 May 15 15:34 pilotlog.txt
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas      8192 May 15 15:34 boinc_mmap_file
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas    604044 May 15 15:34 log.38776104._006043.job.log.1
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas       357 May 15 15:34 output.list
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas       620 May 15 15:34 runtime_log
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas    942080 May 15 15:34 result.tar.gz
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas     11381 May 15 15:34 runtime_log.err
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas       643 May 15 15:34 NUIODm97TR5nsSi4apGgGQJmABFKDmABFKDm4ySLDmROOKDmZplpzn.diag
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas        27 May 15 15:34 wrapper_checkpoint.txt
[2024-05-15 15:34:48] -rw-r--r-- 1 boincer umatlas     21324 May 15 15:34 stderr.txt
[2024-05-15 15:34:48] HITS file was successfully produced:
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas 233288785 May 15 15:33 shared/HITS.pool.root.1
[2024-05-15 15:34:48]  *** Contents of shared directory: ***
[2024-05-15 15:34:48] total 817408
[2024-05-15 15:34:48] -rw-r--r-- 2 boincer umatlas 602276321 May 15 13:55 ATLAS.root_0
[2024-05-15 15:34:48] -rw-r--r-- 2 boincer umatlas    480007 May 15 13:55 input.tar.gz
[2024-05-15 15:34:48] -rw-r--r-- 2 boincer umatlas     17537 May 15 13:55 start_atlas.sh
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas 233288785 May 15 15:33 HITS.pool.root.1
[2024-05-15 15:34:48] -rw------- 1 boincer umatlas    942080 May 15 15:34 result.tar.gz
15:34:50 (3953107): run_atlas exited; CPU time 36212.816486
15:34:50 (3953107): called boinc_finish(0)

</stderr_txt>
]]>

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