Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-15 18:35:46 (6256): Detected: vboxwrapper 26206
2024-05-15 18:35:46 (6256): Detected: BOINC client v7.16.5
2024-05-15 18:35:46 (6256): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2024-05-15 18:35:46 (6256): Successfully copied 'init_data.xml' to the shared directory.
2024-05-15 18:35:47 (6256): Create VM. (boinc_20ddaf6e1834b8d5, slot#9)
2024-05-15 18:35:47 (6256): Setting Memory Size for VM. (4600MB)
2024-05-15 18:35:48 (6256): Setting CPU Count for VM. (6)
2024-05-15 18:35:48 (6256): Setting Chipset Options for VM.
2024-05-15 18:35:48 (6256): Setting Graphics Controller Options for VM.
2024-05-15 18:35:48 (6256): Setting Boot Options for VM.
2024-05-15 18:35:49 (6256): Setting Network Configuration for NAT.
2024-05-15 18:35:50 (6256): Enabling VM Network Access.
2024-05-15 18:35:50 (6256): Disabling USB Support for VM.
2024-05-15 18:35:50 (6256): Disabling COM Port Support for VM.
2024-05-15 18:35:50 (6256): Disabling LPT Port Support for VM.
2024-05-15 18:35:51 (6256): Disabling Audio Support for VM.
2024-05-15 18:35:51 (6256): Disabling Clipboard Support for VM.
2024-05-15 18:35:51 (6256): Disabling Drag and Drop Support for VM.
2024-05-15 18:35:51 (6256): Adding storage controller(s) to VM.
2024-05-15 18:35:52 (6256): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-15 18:35:57 (6256): Adding VirtualBox Guest Additions to VM.
2024-05-15 18:35:57 (6256): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-15 18:35:57 (6256): forwarding host port 52478 to guest port 80
2024-05-15 18:35:57 (6256): Enabling remote desktop for VM.
2024-05-15 18:35:58 (6256): Required extension pack not installed, remote desktop not enabled.
2024-05-15 18:35:58 (6256): Enabling shared directory for VM.
2024-05-15 18:35:58 (6256): Starting VM using VBoxManage interface. (boinc_20ddaf6e1834b8d5, slot#9)
2024-05-15 18:36:04 (6256): Successfully started VM. (PID = '17168')
2024-05-15 18:36:04 (6256): Reporting VM Process ID to BOINC.
2024-05-15 18:36:04 (6256): Guest Log: BIOS: VirtualBox 7.0.12
2024-05-15 18:36:04 (6256): Guest Log: CPUID EDX: 0x178bfbff
2024-05-15 18:36:04 (6256): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-15 18:36:04 (6256): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-15 18:36:04 (6256): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-15 18:36:04 (6256): Detected: Web Application Enabled (http://localhost:52478)
2024-05-15 18:36:04 (6256): Preference change detected
2024-05-15 18:36:04 (6256): Setting CPU throttle for VM. (100%)
2024-05-15 18:36:05 (6256): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-15 18:36:06 (6256): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-15 18:36:06 (6256): Guest Log: BIOS: Booting from Hard Disk...
2024-05-15 18:36:09 (6256): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-15 18:36:09 (6256): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-15 18:36:09 (6256): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-15 18:36:18 (6256): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-15 18:36:18 (6256): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-15 18:36:26 (6256): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000216 main     Log opened 2024-05-15T18:36:24.378305000Z
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000345 main     OS Product: Linux
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000392 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000474 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000518 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000519 main     Process ID: 1330
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.000520 main     Package type: LINUX_64BITS_GENERIC
2024-05-15 18:36:26 (6256): Guest Log: 00:00:00.001693 main     5.2.32 r132073 started. Verbose level = 0
2024-05-15 18:36:26 (6256): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-15 18:36:26 (6256): Guest Log: [INFO] Mounting shared directory
2024-05-15 18:36:26 (6256): Guest Log: [INFO] Checking for init_data.xml
2024-05-15 18:36:29 (6256): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-15 18:36:29 (6256): Guest Log: [INFO] Detected branch: prod
2024-05-15 18:36:30 (6256): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-15 18:36:30 (6256): Guest Log: Copying input files
2024-05-15 18:36:36 (6256): Guest Log: 00:00:10.007993 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 134 346 000ns (GuestNow=1 715 790 996 246 837 000 ns GuestLast=1 715 798 184 381 183 000 ns fSetTimeLastLoop=true )
2024-05-15 18:36:42 (6256): Guest Log: Copied input files into RunAtlas.
2024-05-15 18:36:42 (6256): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-15 18:36:42 (6256): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-15 18:36:42 (6256): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-15 18:36:42 (6256): Guest Log: Further information can be found at the LHC@home message board.
2024-05-15 18:37:00 (6256): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-15 18:37:01 (6256): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-15 18:37:01 (6256): Guest Log: 2.6.3.0 1606 0 32212 132766 3 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-05-15 18:37:03 (6256): Guest Log: copied the webapp to /var/www
2024-05-15 18:37:03 (6256): Guest Log: ATHENA_PROC_NUMBER=6
2024-05-15 18:37:03 (6256): Guest Log: ATHENA_CORE_NUMBER=6
2024-05-15 18:37:04 (6256): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-15 18:37:04 (6256): Guest Log:  *** Starting ATLAS job. (PandaID=6206732234 taskID=38776104) ***
2024-05-15 18:40:02 (6256): Guest Log:  *** Job finished ***
2024-05-15 18:40:02 (6256): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:49,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:49,741 | INFO     | [job] queue monitor thread has finished
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:53,430 | INFO     | [data] queue_monitor thread has finished
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:54,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850867685184)>', '<ExcThread(monitor, started 139850267207424)>']
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:54,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:54,785 | INFO     | [monitor] control thread has ended
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,264 | INFO     | all workflow threads have been joined
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,264 | INFO     | end of generic workflow (traces error code: 0)
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,265 | INFO     | traces error code: 0
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,354 [wrapper] ==== pilot stdout END ====
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,360 [wrapper] ==== wrapper stdout RESUME ====
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,365 [wrapper] pilotpid: 6495
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,370 [wrapper] Pilot exit status: 0
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,467 [wrapper] pandaids: 6206732234
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,507 [wrapper] cleanup: SIGTERM to supervisor_pilot  6500 6496
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,520 [wrapper] Test setup, not cleaning
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,525 [wrapper] ==== wrapper stdout END ====
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,530 [wrapper] ==== wrapper stderr END ====
2024-05-15 18:40:02 (6256): Guest Log: 2024-05-15 16:39:59,541 [wrapper] apfmon messages muted
2024-05-15 18:40:02 (6256): Guest Log:  *** Error codes and diagnostics ***
2024-05-15 18:40:02 (6256): Guest Log:     "exeErrorCode": 65,
2024-05-15 18:40:02 (6256): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2024-05-15 18:40:02 (6256): Guest Log:     "pilotErrorCode": 1305,
2024-05-15 18:40:02 (6256): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-05-15 16:39:24,560 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2024-05-15 18:40:02 (6256): Guest Log:  *** Listing of results directory ***
2024-05-15 18:40:02 (6256): Guest Log: total 3548
2024-05-15 18:40:02 (6256): Guest Log: -rw-r--r--. 1 atlas atlas  467845 May 15 12:06 pilot3.tar.gz
2024-05-15 18:40:02 (6256): Guest Log: -rw-r--r--. 1 atlas atlas    5633 May 15 12:19 queuedata.json
2024-05-15 18:40:02 (6256): Guest Log: -rwx------. 1 atlas atlas   32251 May 15 12:20 runpilot2-wrapper.sh
2024-05-15 18:40:02 (6256): Guest Log: -rwxr-xr-x. 1 atlas atlas    7971 May 15 16:36 init_data.xml
2024-05-15 18:40:02 (6256): Guest Log: -rwxr-xr-x. 1 atlas atlas  480005 May 15 16:36 input.tar.gz
2024-05-15 18:40:02 (6256): Guest Log: -rwxr-xr-x. 1 atlas atlas   17537 May 15 16:36 start_atlas.sh
2024-05-15 18:40:02 (6256): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May 15 16:36 EVNT.38776100._000223.pool.root.1 -> /data/./ATLAS.root_0
2024-05-15 18:40:02 (6256): Guest Log: -rw-r--r--. 1 atlas atlas    2641 May 15 16:37 pandaJob.out
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas     424 May 15 16:37 setup.sh.local
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas 1010542 May 15 16:37 agis_schedconf.cvmfs.json
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas       0 May 15 16:37 agis_ddmendpoints.agis.ALL.json
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas 1324701 May 15 16:37 cric_ddmendpoints.json
2024-05-15 18:40:02 (6256): Guest Log: drwx------. 4 atlas atlas    4096 May 15 16:37 pilot3
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas      95 May 15 16:38 pilot_heartbeat.json
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas     968 May 15 16:39 memory_monitor_summary.json
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas   20413 May 15 16:39 log.38776104._005383.job.log.tgz.1
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas    8395 May 15 16:39 heartbeat.json
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas    4271 May 15 16:39 pilotlog.txt
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas   68737 May 15 16:39 log.38776104._005383.job.log.1
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas     188 May 15 16:39 output.list
2024-05-15 18:40:02 (6256): Guest Log: -rw-r--r--. 1 atlas atlas     620 May 15 16:39 runtime_log
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas  112640 May 15 16:39 result.tar.gz
2024-05-15 18:40:02 (6256): Guest Log: -rw-r--r--. 1 atlas atlas   10762 May 15 16:39 runtime_log.err
2024-05-15 18:40:02 (6256): Guest Log: -rw-------. 1 atlas atlas     626 May 15 16:39 b9cNDmLnSR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmqQJKDm49CWEn.diag
2024-05-15 18:40:02 (6256): Guest Log: Looking for outputfile HITS.38776104._005383.pool.root.1
2024-05-15 18:40:02 (6256): Guest Log: No HITS file was produced
2024-05-15 18:40:02 (6256): Guest Log: Successfully finished the ATLAS job!
2024-05-15 18:40:02 (6256): Guest Log: Copying the results back to the shared directory!
2024-05-15 18:40:02 (6256): Guest Log:  *** Contents of shared directory: ***
2024-05-15 18:40:02 (6256): Guest Log: total 561388
2024-05-15 18:40:02 (6256): Guest Log: -rwxrwxrwx. 1 root root 598246121 May 15 16:35 ATLAS.root_0
2024-05-15 18:40:02 (6256): Guest Log: -rwxrwxrwx. 1 root root      7971 May 15 16:35 init_data.xml
2024-05-15 18:40:02 (6256): Guest Log: -rwxrwxrwx. 1 root root    480005 May 15 16:01 input.tar.gz
2024-05-15 18:40:02 (6256): Guest Log: -rwxrwxrwx. 1 root root    112640 May 15 16:40 result.tar.gz
2024-05-15 18:40:02 (6256): Guest Log: -rwxrwxrwx. 1 root root     17537 May 15 16:01 start_atlas.sh
2024-05-15 18:40:02 (6256): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-15 18:40:02 (6256): VM Completion File Detected.
2024-05-15 18:40:02 (6256): Powering off VM.
2024-05-15 18:40:03 (6256): Successfully stopped VM.
2024-05-15 18:40:03 (6256): Deregistering VM. (boinc_20ddaf6e1834b8d5, slot#9)
2024-05-15 18:40:03 (6256): Removing network bandwidth throttle group from VM.
2024-05-15 18:40:03 (6256): Removing VM from VirtualBox.
18:40:09 (6256): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN