Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:33:02 (42094): wrapper (7.7.26015): starting
10:33:02 (42094): wrapper: running run_atlas (--nthreads 8)
[2024-05-15 10:33:02] Arguments: --nthreads 8
[2024-05-15 10:33:02] Threads: 8
[2024-05-15 10:33:02] Checking for CVMFS
[2024-05-15 10:33:02] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-15 10:33:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-15 10:33:02] Running cvmfs_config stat atlas.cern.ch
[2024-05-15 10:33:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-15 10:33:02] 2.11.2.0 25391 207 75900 132763 0 287 15273493 18432000 30724 130560 0 1493925 98.785 4024549 66921 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-05-15 10:33:02] CVMFS is ok
[2024-05-15 10:33:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 10:33:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 10:33:02] Further information can be found at the LHC@home message board.
[2024-05-15 10:33:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 10:33:02] Checking for apptainer binary...
[2024-05-15 10:33:02] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-15 10:33:02] Running /usr/bin/apptainer --version
[2024-05-15 10:33:02] apptainer version 1.3.0-1.el7
[2024-05-15 10:33:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 10:33:02] c-212-9.aglt2.org
[2024-05-15 10:33:02] apptainer works
[2024-05-15 10:33:02] Set ATHENA_PROC_NUMBER=8
[2024-05-15 10:33:02] Set ATHENA_CORE_NUMBER=8
[2024-05-15 10:33:02] Starting ATLAS job with PandaID=6206688048
[2024-05-15 10:33:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 13:30:48]  *** The last 200 lines of the pilot log: ***
[2024-05-15 13:30:48] 2024-05-15 17:30:29,069 | INFO     | intersect: -102580504887.93858
[2024-05-15 13:30:48] 2024-05-15 17:30:29,070 | INFO     | chi2: 6.424999725934032
[2024-05-15 13:30:48] 2024-05-15 17:30:29,070 | INFO     | model: linear, x: [1715783623.0, 1715783684.0, 1715783745.0, 1715783806.0, 1715783867.0, 1715783928.0, 1715783989.0, 1715784050.0, 1715784111.0, 1715784172.0, 1715
[2024-05-15 13:30:48] 2024-05-15 17:30:29,070 | INFO     | sum of square deviations: 1470240181.9047577
[2024-05-15 13:30:48] 2024-05-15 17:30:29,071 | INFO     | sum of deviations: 104653620213.8572
[2024-05-15 13:30:48] 2024-05-15 17:30:29,071 | INFO     | mean x: 1715788716.5238094
[2024-05-15 13:30:48] 2024-05-15 17:30:29,071 | INFO     | mean y: 2411046.035714286
[2024-05-15 13:30:48] 2024-05-15 17:30:29,071 | INFO     | -- intersect: -122129675205.11829
[2024-05-15 13:30:48] 2024-05-15 17:30:29,071 | INFO     | intersect: -122129675205.11829
[2024-05-15 13:30:48] 2024-05-15 17:30:29,071 | INFO     | chi2: 5.62426863569949
[2024-05-15 13:30:48] 2024-05-15 17:30:29,072 | INFO     | current chi2=5.62426863569949 (change=12.462741235652512 %)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,072 | INFO     | right removable region: 167
[2024-05-15 13:30:48] 2024-05-15 17:30:29,072 | INFO     | model: linear, x: [1715783928.0, 1715783989.0, 1715784050.0, 1715784111.0, 1715784172.0, 1715784233.0, 1715784294.0, 1715784355.0, 1715784416.0, 1715784477.0, 1715
[2024-05-15 13:30:48] 2024-05-15 17:30:29,072 | INFO     | sum of square deviations: 1470237741.9047577
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | sum of deviations: 50207826458.14283
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | mean x: 1715789021.5238094
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | mean y: 2453090.214285714
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | -- intersect: -58590817219.82967
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | intersect: -58590817219.82967
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | chi2: 3.484309565803105
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | current chi2=3.484309565803105 (change=45.76949860808632 %)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,073 | INFO     | model: linear, x: [1715784233.0, 1715784294.0, 1715784355.0, 1715784416.0, 1715784477.0, 1715784538.0, 1715784599.0, 1715784660.0, 1715784721.0, 1715784782.0, 1715
[2024-05-15 13:30:48] 2024-05-15 17:30:29,074 | INFO     | sum of square deviations: 1342829481.9018447
[2024-05-15 13:30:48] 2024-05-15 17:30:29,074 | INFO     | sum of deviations: 13215987217.736193
[2024-05-15 13:30:48] 2024-05-15 17:30:29,074 | INFO     | mean x: 1715789174.02454
[2024-05-15 13:30:48] 2024-05-15 17:30:29,074 | INFO     | mean y: 2497377.8159509203
[2024-05-15 13:30:48] 2024-05-15 17:30:29,074 | INFO     | -- intersect: -16884120095.10603
[2024-05-15 13:30:48] 2024-05-15 17:30:29,075 | INFO     | intersect: -16884120095.10603
[2024-05-15 13:30:48] 2024-05-15 17:30:29,075 | INFO     | chi2: 1.6985760258274052
[2024-05-15 13:30:48] 2024-05-15 17:30:29,075 | INFO     | current chi2=1.6985760258274052 (change=51.25071427354943 %)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,075 | INFO     | model: linear, x: [1715784538.0, 1715784599.0, 1715784660.0, 1715784721.0, 1715784782.0, 1715784843.0, 1715784904.0, 1715784965.0, 1715785026.0, 1715785087.0, 1715
[2024-05-15 13:30:48] 2024-05-15 17:30:29,075 | INFO     | sum of square deviations: 1223002759.398728
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | sum of deviations: -9455234540.050632
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | mean x: 1715789326.5253165
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | mean y: 2525988.0126582277
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | -- intersect: 13267574148.319582
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | intersect: 13267574148.319582
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | chi2: 0.8522043556123123
[2024-05-15 13:30:48] 2024-05-15 17:30:29,076 | INFO     | current chi2=0.8522043556123123 (change=49.82830661364191 %)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,077 | INFO     | model: linear, x: [1715784843.0, 1715784904.0, 1715784965.0, 1715785026.0, 1715785087.0, 1715785148.0, 1715785209.0, 1715785270.0, 1715785331.0, 1715785392.0, 1715
[2024-05-15 13:30:48] 2024-05-15 17:30:29,077 | INFO     | sum of square deviations: 1110525011.8954291
[2024-05-15 13:30:48] 2024-05-15 17:30:29,077 | INFO     | sum of deviations: -10467419567.764708
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | mean x: 1715789479.0261438
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | mean y: 2527347.9411764704
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | -- intersect: 16174957662.02242
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | intersect: 16174957662.02242
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | chi2: 0.8500056414131739
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | current chi2=0.8500056414131739 (change=0.2580031637550871 %)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | left removable region: 40
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | model: linear, x: [1715786063.0, 1715786124.0, 1715786185.0, 1715786246.0, 1715786307.0, 1715786368.0, 1715786429.0, 1715786490.0, 1715786551.0, 1715786612.0, 1715
[2024-05-15 13:30:48] 2024-05-15 17:30:29,078 | INFO     | sum of square deviations: 635128585.9685051
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | sum of deviations: 1089017048.6220472
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | mean x: 1715789906.015748
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | mean y: 2540500.188976378
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | -- intersect: -2939421963.4520893
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | intersect: -2939421963.4520893
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | chi2: 0.001340856743025472
[2024-05-15 13:30:48] 2024-05-15 17:30:29,079 | INFO     | -- intersect: -2939421963.4520893
[2024-05-15 13:30:48] 2024-05-15 17:30:29,080 | INFO     | current memory leak: 1.71 B/s (using 127 data points, chi2=0.00)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,080 | INFO     | ..............................
[2024-05-15 13:30:48] 2024-05-15 17:30:29,080 | INFO     | . Timing measurements:
[2024-05-15 13:30:48] 2024-05-15 17:30:29,080 | INFO     | . get job = 0 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,080 | INFO     | . initial setup = 1 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,081 | INFO     | . payload setup = 5 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,081 | INFO     | . stage-in = 0 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,081 | INFO     | . payload execution = 10539 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,081 | INFO     | . stage-out = 3 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,081 | INFO     | . log creation = 1 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,081 | INFO     | ..............................
[2024-05-15 13:30:48] 2024-05-15 17:30:29,356 | INFO     | 
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | job summary report
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | --------------------------------------------------
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | PanDA job id: 6206688048
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | task id: 38776104
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | errors: (none)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | pilot state: finished 
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | transexitcode: 0
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | exeerrorcode: 0
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | exeerrordiag: 
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | exitcode: 0
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | exitmsg: OK
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | cpuconsumptiontime: 35780 s
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | nevents: 400
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | neventsw: 0
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | pid: 2632
[2024-05-15 13:30:48] 2024-05-15 17:30:29,357 | INFO     | pgrp: 2632
[2024-05-15 13:30:48] 2024-05-15 17:30:29,358 | INFO     | corecount: 8
[2024-05-15 13:30:48] 2024-05-15 17:30:29,358 | INFO     | event service: False
[2024-05-15 13:30:48] 2024-05-15 17:30:29,358 | INFO     | sizes: {0: 2395743, 1: 2396678, 6: 2396884, 11: 2396912, 10549: 2425738, 10553: 2434698, 10554: 2434882, 10618: 2435052}
[2024-05-15 13:30:48] 2024-05-15 17:30:29,358 | INFO     | --------------------------------------------------
[2024-05-15 13:30:48] 2024-05-15 17:30:29,358 | INFO     | 
[2024-05-15 13:30:48] 2024-05-15 17:30:29,358 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2024-05-15 13:30:48] 2024-05-15 17:30:29,658 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | job 6206688048 has completed (purged errors)
[2024-05-15 13:30:48] 2024-05-15 17:30:29,660 | INFO     | overall cleanup function is called
[2024-05-15 13:30:48] 2024-05-15 17:30:30,674 | INFO     | --- collectZombieJob: --- 10, [2632]
[2024-05-15 13:30:48] 2024-05-15 17:30:30,675 | INFO     | zombie collector waiting for pid 2632
[2024-05-15 13:30:48] 2024-05-15 17:30:30,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 13:30:48] 2024-05-15 17:30:31,680 | INFO     | collected zombie processes
[2024-05-15 13:30:48] 2024-05-15 17:30:31,681 | INFO     | will now attempt to kill all subprocesses of pid=2632
[2024-05-15 13:30:48] 2024-05-15 17:30:32,169 | INFO     | process IDs to be killed: [2632] (in reverse order)
[2024-05-15 13:30:48] 2024-05-15 17:30:33,304 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 13:30:48] 2024-05-15 17:30:33,304 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 13:30:48] 2024-05-15 17:30:33,341 | INFO     | did not find any defunct processes belonging to 2632
[2024-05-15 13:30:48] 2024-05-15 17:30:33,359 | INFO     | did not find any defunct processes belonging to 2632
[2024-05-15 13:30:48] 2024-05-15 17:30:33,360 | INFO     | ready for new job
[2024-05-15 13:30:48] 2024-05-15 17:30:33,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 13:30:48] 2024-05-15 17:30:33,363 | INFO     | *************************************
[2024-05-15 13:30:48] 2024-05-15 17:30:33,363 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 13:30:48] 2024-05-15 17:30:33,363 | INFO     | *************************************
[2024-05-15 13:30:48] 2024-05-15 17:30:33,363 | INFO     | 
[2024-05-15 13:30:48] 2024-05-15 17:30:33,367 | INFO     | architecture information:
[2024-05-15 13:30:48] 2024-05-15 17:30:33,384 | INFO     | executing command: cat /etc/os-release
[2024-05-15 13:30:48] 2024-05-15 17:30:33,463 | INFO     | cat /etc/os-release:
[2024-05-15 13:30:48] NAME="CentOS Linux"
[2024-05-15 13:30:48] VERSION="7 (Core)"
[2024-05-15 13:30:48] ID="centos"
[2024-05-15 13:30:48] ID_LIKE="rhel fedora"
[2024-05-15 13:30:48] VERSION_ID="7"
[2024-05-15 13:30:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 13:30:48] ANSI_COLOR="0;31"
[2024-05-15 13:30:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 13:30:48] HOME_URL="https://www.centos.org/"
[2024-05-15 13:30:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 13:30:48] 
[2024-05-15 13:30:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 13:30:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 13:30:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 13:30:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 13:30:48] 
[2024-05-15 13:30:48] 2024-05-15 17:30:33,463 | INFO     | *************************************
[2024-05-15 13:30:48] 2024-05-15 17:30:33,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2024-05-15 13:30:48] 2024-05-15 17:30:34,157 | INFO     | sufficient remaining disk space (98850308096 B)
[2024-05-15 13:30:48] 2024-05-15 17:30:34,157 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 13:30:48] 2024-05-15 17:30:34,157 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 13:30:48] 2024-05-15 17:30:34,158 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 13:30:48] 2024-05-15 17:30:34,158 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 13:30:48] 2024-05-15 17:30:34,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 13:30:48] 2024-05-15 17:30:34,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 13:30:48] 2024-05-15 17:30:34,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 13:30:48] 2024-05-15 17:30:34,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 13:30:48] 2024-05-15 17:30:34,594 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 13:30:48] 2024-05-15 17:30:34,595 | INFO     | aborting loop
[2024-05-15 13:30:48] 2024-05-15 17:30:34,679 | INFO     | all data control threads have been joined
[2024-05-15 13:30:48] 2024-05-15 17:30:35,163 | INFO     | [job] retrieve thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,240 | INFO     | [job] queue monitor thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 13:30:48] 2024-05-15 17:30:35,469 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,480 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,482 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,493 | INFO     | all payload control threads have been joined
[2024-05-15 13:30:48] 2024-05-15 17:30:35,519 | INFO     | [payload] failed_post thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,554 | INFO     | [job] validate thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,600 | INFO     | [job] job monitor thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,653 | INFO     | all job control threads have been joined
[2024-05-15 13:30:48] 2024-05-15 17:30:35,685 | INFO     | [data] control thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,844 | INFO     | [data] copytool_in thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:35,856 | INFO     | [payload] validate_post thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:36,498 | INFO     | [payload] control thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:36,504 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:36,658 | INFO     | [job] control thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:37,450 | INFO     | [data] copytool_out thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:38,170 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 13:30:48] 2024-05-15 17:30:40,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229196273472)>', '<ExcThread(monitor, started 140228761200384)>']
[2024-05-15 13:30:48] 2024-05-15 17:30:40,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 13:30:48] 2024-05-15 17:30:40,247 | INFO     | [monitor] control thread has ended
[2024-05-15 13:30:48] 2024-05-15 17:30:45,099 | INFO     | all workflow threads have been joined
[2024-05-15 13:30:48] 2024-05-15 17:30:45,100 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 13:30:48] 2024-05-15 17:30:45,101 | INFO     | traces error code: 0
[2024-05-15 13:30:48] 2024-05-15 17:30:45,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 13:30:48] 2024-05-15 17:30:45,673 [wrapper] ==== pilot stdout END ====
[2024-05-15 13:30:48] 2024-05-15 17:30:45,747 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 13:30:48] 2024-05-15 17:30:45,779 [wrapper] pilotpid: 59839
[2024-05-15 13:30:48] 2024-05-15 17:30:45,788 [wrapper] Pilot exit status: 0
[2024-05-15 13:30:48] 2024-05-15 17:30:46,073 [wrapper] pandaids: 6206688048
[2024-05-15 13:30:48] 2024-05-15 17:30:46,756 [wrapper] cleanup: SIGTERM to supervisor_pilot 26801 59840
[2024-05-15 13:30:48] 2024-05-15 17:30:46,809 [wrapper] Test setup, not cleaning
[2024-05-15 13:30:48] 2024-05-15 17:30:46,899 [wrapper] ==== wrapper stdout END ====
[2024-05-15 13:30:48] 2024-05-15 17:30:46,948 [wrapper] ==== wrapper stderr END ====
[2024-05-15 13:30:48] 2024-05-15 17:30:47,059 [wrapper] apfmon messages muted
[2024-05-15 13:30:48]  *** Error codes and diagnostics ***
[2024-05-15 13:30:48]     "exeErrorCode": 0,
[2024-05-15 13:30:48]     "exeErrorDiag": "",
[2024-05-15 13:30:48]     "pilotErrorCode": 0,
[2024-05-15 13:30:48]     "pilotErrorDiag": "",
[2024-05-15 13:30:48]  *** Listing of results directory ***
[2024-05-15 13:30:48] total 817336
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas    467845 May 15 07:19 pilot3.tar.gz
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas      5633 May 15 07:24 queuedata.json
[2024-05-15 13:30:48] -rwx------ 1 boincer umatlas     32251 May 15 07:24 runpilot2-wrapper.sh
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas       100 May 15 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 13:30:48] -rwxr-xr-x 1 boincer umatlas      7986 May 15 10:33 run_atlas
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas       105 May 15 10:33 job.xml
[2024-05-15 13:30:48] -rw-r--r-- 2 boincer umatlas     17537 May 15 10:33 start_atlas.sh
[2024-05-15 13:30:48] drwxrwx--x 2 boincer umatlas      4096 May 15 10:33 shared
[2024-05-15 13:30:48] -rw-r--r-- 2 boincer umatlas    480003 May 15 10:33 input.tar.gz
[2024-05-15 13:30:48] -rw-r--r-- 2 boincer umatlas 601209372 May 15 10:33 EVNT.38776100._000206.pool.root.1
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas         0 May 15 10:33 boinc_lockfile
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas      2641 May 15 10:33 pandaJob.out
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas       424 May 15 10:33 setup.sh.local
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas   1010542 May 15 10:33 agis_schedconf.cvmfs.json
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas         0 May 15 10:33 agis_ddmendpoints.agis.ALL.json
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas   1325758 May 15 10:33 cric_ddmendpoints.json
[2024-05-15 13:30:48] drwx------ 4 boincer umatlas      4096 May 15 10:33 pilot3
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas 229491023 May 15 13:27 HITS.38776104._005130.pool.root.1
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas       531 May 15 13:28 boinc_task_state.xml
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas      1085 May 15 13:29 memory_monitor_summary.json
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas    361145 May 15 13:29 log.38776104._005130.job.log.tgz.1
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas        95 May 15 13:30 pilot_heartbeat.json
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas      7744 May 15 13:30 heartbeat.json
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas      6302 May 15 13:30 init_data.xml
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas      4334 May 15 13:30 pilotlog.txt
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas    996967 May 15 13:30 log.38776104._005130.job.log.1
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas      8192 May 15 13:30 boinc_mmap_file
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas        28 May 15 13:30 wrapper_checkpoint.txt
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas       357 May 15 13:30 output.list
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas       620 May 15 13:30 runtime_log
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas   1382400 May 15 13:30 result.tar.gz
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas       649 May 15 13:30 xMdKDmtvRR5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmRNJKDm5viEBo.diag
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas     10995 May 15 13:30 runtime_log.err
[2024-05-15 13:30:48] -rw-r--r-- 1 boincer umatlas     21615 May 15 13:30 stderr.txt
[2024-05-15 13:30:48] HITS file was successfully produced:
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas 229491023 May 15 13:27 shared/HITS.pool.root.1
[2024-05-15 13:30:48]  *** Contents of shared directory: ***
[2024-05-15 13:30:48] total 813088
[2024-05-15 13:30:48] -rw-r--r-- 2 boincer umatlas     17537 May 15 10:33 start_atlas.sh
[2024-05-15 13:30:48] -rw-r--r-- 2 boincer umatlas    480003 May 15 10:33 input.tar.gz
[2024-05-15 13:30:48] -rw-r--r-- 2 boincer umatlas 601209372 May 15 10:33 ATLAS.root_0
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas 229491023 May 15 13:27 HITS.pool.root.1
[2024-05-15 13:30:48] -rw------- 1 boincer umatlas   1382400 May 15 13:30 result.tar.gz
13:30:50 (42094): run_atlas exited; CPU time 34836.007875
13:30:50 (42094): called boinc_finish(0)

</stderr_txt>
]]>

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